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Behrouz Shamsaei · SciRah

Researcher profile · Semantic Scholar

Behrouz Shamsaei

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Behrouz Shamsaei — researcher profile on SciRah

h-index: 13
Works: 28
Citations: 1,103

Most-cited papers

The Library of Integrated Network-based Cellular Signatures (LINCS) NIH Program: System-level Cataloging of Human Cells Response to Perturbations
A. Keenan, Sherry L. Jenkins, K. Jagodnik, Simon Koplev +103 more
2017Cell Systems391 citations Open access
Semantic Scholar
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data
Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung +25 more
2017Nucleic Acids Res.177 citations Open access
Semantic Scholar
Connecting omics signatures and revealing biological mechanisms with iLINCS
M. Pilarczyk, M. Fazel-Najafabadi, Michal Kouril, Behrouz Shamsaei +22 more
2022Nature Communications102 citations Open access
Semantic Scholar
GRAND: a database of gene regulatory network models across human conditions
M. Ben Guebila, C. Lopes-Ramos, Deborah A. Weighill, A. Sonawane +6 more
2021bioRxiv81 citations Open access
Semantic Scholar
Crowdsourced mapping of unexplored target space of kinase inhibitors
A. Cichońska, Balaguru Ravikumar, Robert J. Allaway, Fangping Wan +83 more
2020Nature Communications75 citations Open access
Semantic Scholar
Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS
M. Pilarczyk, Michal Kouril, Behrouz Shamsaei, Juozas Vasiliauskas +21 more
2019bioRxiv42 citations Open access
Semantic Scholar
Exponential Basis Functions in solution of laminated structures
Behrouz Shamsaei, B. Boroomand
201135 citations
Semantic Scholar
Identification of candidate repurposable drugs to combat COVID-19 using a signature-based approach
S. O'Donovan, A. Imami, H. Eby, Nicholas D. Henkel +11 more
2021Scientific Reports28 citations Open access
Semantic Scholar
Tobacco smoking induces metabolic reprogramming of renal cell carcinoma.
James Reigle, D. Secic, J. Biesiada, Collin Wetzel +20 more
2020Journal of Clinical Investigation28 citations Open access
Semantic Scholar
piNET: a versatile web platform for downstream analysis and visualization of proteomics data
Behrouz Shamsaei, Szymon Chojnacki, M. Pilarczyk, M. Najafabadi +18 more
2019bioRxiv27 citations Open access
Semantic Scholar
Variability of Indoor Fungal Microbiome of Green and Non-Green Low-Income Homes in Cincinnati, Ohio
Kanistha Coombs, Diana H. Taft, D. Ward, B. Green +5 more
2017Science of the Total Environment26 citations Open access
Semantic Scholar
Molecular and Metabolic Subtypes in Sporadic and Inherited Clear Cell Renal Cell Carcinoma
M. Czyzyk-Krzeska, J. Landero-Figueroa, S. Gulati, John T. Cunningham +4 more
2021Genes20 citations Open access
Semantic Scholar
Solution of fully-coupled shallow water equations and contaminant transport using a primitive-variable Riemann method
Faranak Behzadi, Behrouz Shamsaei, James C. Iii Newman
2018Environmental Fluid Mechanics18 citations
Semantic Scholar
Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma
Megan E. Bischoff, Behrouz Shamsaei, Jue-Chen Yang, D. Secic +18 more
2024bioRxiv13 citations Open access
Semantic Scholar
Accelerating drug discovery and repurposing by combining transcriptional signature connectivity with docking
A. Thorman, James Reigle, S. Chutipongtanate, Jue-Chen Yang +18 more
2020bioRxiv12 citations Open access
Semantic Scholar
Copper Drives Remodeling of Metabolic State and Progression of Clear Cell Renal Cell Carcinoma
Megan E. Bischoff, Behrouz Shamsaei, Jue-Chen Yang, D. Secic +22 more
2024Cancer Discovery11 citations Open access
Semantic Scholar
Comparison of some machine learning and statistical algorithms for classification and prediction of human cancer type
Behrouz Shamsaei, Cuilan Gao
20162016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)9 citations
Semantic Scholar
Identification of new drug treatments to combat COVID19: A signature-based approach using iLINCS
Sinead M. O'Donovan, H. Eby, Nicholas D. Henkel, J. Creeden +11 more
2020Research Square6 citations Open access
Semantic Scholar
A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis
J. Spieser, Ali Balapour, Jarek Meller, K. Patra +1 more
2026Methods and Protocols2 citations Open access
Semantic Scholar
Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data
D. Vidović, Behrouz Shamsaei, S. Schürer, Phillip Kogan +70 more
2025Molecular & Cellular Proteomics1 citations
Semantic Scholar
Region-Specific PSD-95 Interactomes Contribute to Functional Diversity of Excitatory Synapses in Human Brain
A. Funk, Guillaume Labilloy, James Reigle, Rawan S. Alnafisah +6 more
2020bioRxiv1 citations Open access
Semantic Scholar
Comparison of linear and non-linear elasticity large displacement mesh deformation in Computational Fluid Dynamics
Behrouz Shamsaei, J. Newman
20161 citations
Semantic Scholar
GPCR-Nexus: Multi-Agent Orchestration for Knowledge Retrieval
J. Spieser, Jue-Chen Yang, Jarek Meller, K. Patra +1 more
2026bioRxiv0 citations Open access
Semantic Scholar
Corrigendum to “Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data”
D. Vidović, Behrouz Shamsaei, S. Schürer, Phillip Kogan +69 more
2025Molecular & Cellular Proteomics0 citations
Semantic Scholar
Association of mitochondrial metabolic activity and immune pathways with disease stage in renal cell carcinoma.
S. Gulati, Behrouz Shamsaei, Bhargav Vemuri, Jue-Chen Yang +7 more
2023Journal of Clinical Oncology0 citations Open access
Semantic Scholar
Complimentary transcriptomic-metallomic analysis identifies risk of relapse for clear-cell renal cell carcinoma (ccRCC) patients.
S. Gulati, Bhargav Vemuri, D. Secic, Behrouz Shamsaei +5 more
2022Journal of Clinical Oncology0 citations
Semantic Scholar
Connectivity Enhanced Structure Activity Relationship (ceSAR): A Novel Approach to Increase Accuracy and Speed of Virtual Drug Discovery
A. Thorman, James Reigle, S. Chutipongtanate, Behrouz Shamsaei +6 more
2020The FASEB Journal0 citations
Semantic Scholar
On the uncertainty quantification and non-linear hyper elastic simulation of biological tissues
Behrouz Shamsaei
20160 citations
Semantic Scholar

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