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M. Knapp · SciRah

Researcher profile · Semantic Scholar

M. Knapp

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M. Knapp — researcher profile on SciRah

h-index: 13
Works: 35
Citations: 1,844

Most-cited papers

Transcription Factor HIF-1 Is a Necessary Mediator of the Pasteur Effect in Mammalian Cells
T. Seagroves, H. E. Ryan, Han Lu, B. Wouters +4 more
2001Molecular and Cellular Biology634 citations Open access
Semantic Scholar
5′-AMP-Activated Protein Kinase (AMPK) Is Induced by Low-Oxygen and Glucose Deprivation Conditions Found in Solid-Tumor Microenvironments
K. Laderoute, Khalid Amin, J. Calaoagan, M. Knapp +4 more
2006Molecular and Cellular Biology471 citations
Semantic Scholar
Pathway Logic: Symbolic Analysis of Biological Signaling
S. Eker, M. Knapp, K. Laderoute, P. Lincoln +2 more
2001Pacific Symposium on Biocomputing177 citations
Semantic Scholar
Pathway Logic: Executable Models of Biological Networks
S. Eker, M. Knapp, K. Laderoute, P. Lincoln +1 more
2004Workshop on Rewriting Logic and Its Applications102 citations Open access
Semantic Scholar
Mapping of the vascular endothelial growth factor-producing hypoxic cells in multicellular tumor spheroids using a hypoxia-specific marker.
N. Waleh, M. Brody, M. Knapp, H. Mendonca +4 more
1995Cancer Research89 citations
Semantic Scholar
Pathway logic modeling of protein functional domains in signal transduction
C. Talcott, S. Eker, M. Knapp, P. Lincoln +1 more
2003Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB200378 citations
Semantic Scholar
Integrated analysis of breast cancer cell lines reveals unique signaling pathways
L. Heiser, Nicholas Wang, C. Talcott, K. Laderoute +11 more
2009Genome Biology69 citations Open access
Semantic Scholar
Analyzing Pathways Using SAT-Based Approaches
A. Tiwari, C. Talcott, M. Knapp, P. Lincoln +1 more
2007Algebraic Biology47 citations
Semantic Scholar
Glucose Utilization Is Essential for Hypoxia-Inducible Factor 1α-Dependent Phosphorylation of c-Jun
K. Laderoute, J. Calaoagan, M. Knapp, R. Johnson
2004Molecular and Cellular Biology28 citations Open access
Semantic Scholar
Epidermal Growth Factor Signaling towards Proliferation: Modeling and Logic Inference Using Forward and Backward Search
A. Riesco, Beatriz Santos-Buitrago, J De Las Rivas, M. Knapp +2 more
2017BioMed Research International24 citations Open access
Semantic Scholar
Adaptation of EGF receptor signal transduction to three‐dimensional culture conditions: Changes in surface receptor expression and protein tyrosine phosphorylation
J. Mansbridge, W. Ausserer, M. Knapp, R. Sutherland
1994Journal of Cellular Physiology24 citations
Semantic Scholar
The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways
D. Dill, M. Knapp, P. Gage, C. Talcott +2 more
2005Systems Biology and Regulatory Genomics20 citations
Semantic Scholar
Soft Set Theory for Decision Making in Computational Biology under Incomplete Information
Beatriz Santos-Buitrago, A. Riesco, M. Knapp, J. Alcantud +2 more
2019IEEE Access15 citations Open access
Semantic Scholar
Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data
A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte +17 more
2018Computational Methods in Systems Biology11 citations
Semantic Scholar
Inferring Executable Models from Formalized Experimental Evidence
Vivek Nigam, Robin Donaldson, M. Knapp, Timothy McCarthy +1 more
2015Computational Methods in Systems Biology10 citations
Semantic Scholar
Contraceptive and Infertility Target DataBase: a contraceptive drug development tool for targeting and analysis of human reproductive specific tissues
Subarna Sinha, M. Knapp, John Pywtorak, Greg McCain +10 more
2021Biology of Reproduction7 citations Open access
Semantic Scholar
Explaining Response to Drugs Using Pathway Logic
C. Talcott, M. Knapp
2017Computational Methods in Systems Biology7 citations
Semantic Scholar
Understanding signalling networks as collections of signal transduction pathways
Robin Donaldson, C. Talcott, M. Knapp, Muffy Calder
2010Computational Methods in Systems Biology6 citations Open access
Semantic Scholar
Learning Causality: Synthesis of Large-Scale Causal Networks from High-Dimensional Time Series Data
Mark-Oliver Stehr, P. Avar, Andrew R. Korte, Lida Parvin +11 more
2019arXiv.org5 citations
Semantic Scholar
Pathway logic helping biologists understand and organize pathway information
M. Knapp, L. Briesemeister, Steven Eker, Patrick Lincoln +3 more
20052005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05)4 citations Open access
Semantic Scholar
Altered splicing of the ATDC message in ataxia telangiectasia group D cells results in the absence of a functional protein.
H. Tauchi, C. Green, M. Knapp, K. Laderoute +1 more
2000Mutagenesis4 citations
Semantic Scholar
Reverse Inference in Symbolic Systems Biology
Beatriz Santos-Buitrago, A. Riesco, M. Knapp, Gustavo Santos-García +1 more
2017Practical Applications of Computational Biology & Bioinformatics3 citations
Semantic Scholar
Fuzzy Matching for Cellular Signaling Networks in a Choroidal Melanoma Model
A. Riesco, Beatriz Santos-Buitrago, M. Knapp, Gustavo Santos-García +2 more
2020Practical Applications of Computational Biology & Bioinformatics2 citations
Semantic Scholar
Probabilistic Approximate Logic and its Implementation in the Logical Imagination Engine
Mark-Oliver Stehr, Minyoung Kim, C. Talcott, M. Knapp +1 more
2019arXiv.org2 citations
Semantic Scholar
Applications of Pathway Logic Modeling to Target Identification
Anupama Panikkar, M. Knapp, H. Mi, Dave Anderson +3 more
2011Formal Modeling: Actors, Open Systems, Biological Systems2 citations
Semantic Scholar
Spectral Decomposition of Signaling Networks
B. Parvin, Z. N. Ghosh, L. Heiser, M. Knapp +4 more
20062007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology2 citations Open access
Semantic Scholar
Transcriptional Response of SK-N-AS Cells to Methamidophos
A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte +12 more
2019arXiv.org1 citations
Semantic Scholar
Transcriptional Response of SK-N-AS Cells to Methamidophos (Extended Abstract)
A. Vertes, Albert-Baskar Arul, P. Avar, Andrew R. Korte +12 more
2019Computational Methods in Systems Biology1 citations
Semantic Scholar
Abstract LB108: Validation of computationally predicted synthetic lethal interactions for KRAS
Helena Gong, C. Repellin, Puja Patel, M. Knapp +6 more
2021Experimental and Molecular Therapeutics0 citations
Semantic Scholar
DatumKB: A Database of Biological Experimental Results
M. Knapp, Tim McCarthy, C. Talcott
2021bioRxiv0 citations Open access
Semantic Scholar
Mechanism of Action Identified in 30 Days: a Systems Biology Approach
A. Vertes, Andrew R. Korte, Camille Lombard‐Banek, P. Nemes +21 more
2016The FASEB Journal0 citations Open access
Semantic Scholar
Protease networks and pathway interconnectivity in Gram‐positive bacteria
Anupama Panikkar, M. Knapp, K. Kodukula, Amit K. Galande +1 more
20110 citations
Semantic Scholar
Systems-based analysis of responses to stimulation or inhibition of EGF receptor signaling in breast cancer cells
O. Mirzoeva, Jing Zhang, R. Neve, H. Feiler +17 more
20070 citations
Semantic Scholar
USING PATHWAY LOGIC TO INTEGRATE SIGNAL TRANSDUCTION AND GENE EXPRESSION DATA
L. Briesemeister, M. Knapp, A. Poggio, C. Talcott +3 more
20060 citations
Semantic Scholar
Pathway Logic: Helping Biologists to Organize and Understand Pathway Information
M. Knapp, L. Briesemeister
20050 citations
Semantic Scholar

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