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C. Keime · SciRah

Researcher profile · Semantic Scholar

C. Keime

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C. Keime — researcher profile on SciRah

h-index: 32
Works: 87
Citations: 4,756

Most-cited papers

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
M. Dillies, A. Rau, J. Aubert, C. Hennequet-Antier +15 more
2013Briefings Bioinform.1,262 citations Open access
Semantic Scholar
seqMINER: an integrated ChIP-seq data interpretation platform
T. Ye, A. Krebs, M. Choukrallah, C. Keime +3 more
2010Nucleic Acids Research431 citations Open access
Semantic Scholar
Essential role of microphthalmia transcription factor for DNA replication, mitosis and genomic stability in melanoma
T. Strub, Sandy Giuliano, Tao Ye, C. Bonet +7 more
2011Oncogene267 citations Open access
Semantic Scholar
Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells
Maud de Dieuleveult, K. Yen, Isabelle Hmitou, A. Depaux +20 more
2015Nature214 citations Open access
Semantic Scholar
Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells
P. Laurette, T. Strub, D. Koludrovic, C. Keime +9 more
2015eLife168 citations Open access
Semantic Scholar
Rfx6 Maintains the Functional Identity of Adult Pancreatic β Cells
Julie Piccand, Perrine Strasser, D. Hodson, Aline Meunier +5 more
2014Cell Reports143 citations Open access
Semantic Scholar
Cell cycle gene regulation dynamics revealed by RNA velocity and deep-learning
A. Riba, Attila Oravecz, Matej Durik, Sara Jiménez +6 more
2021Nature Communications116 citations Open access
Semantic Scholar
Genetic Analysis of the Biosynthesis of 2-Methoxy-3-Isobutylpyrazine, a Major Grape-Derived Aroma Compound Impacting Wine Quality1[W]
S. Guillaumie, A. Ilg, S. Réty, M. Brette +14 more
2013Plant Physiology100 citations Open access
Semantic Scholar
Transcription factor TEAD4 regulates expression of Myogenin and the unfolded protein response genes during C2C12 cell differentiation
I. Davidson, Attaailah Benhaddou, C. Keime, T. Ye +4 more
2011Cell Death and Differentiation97 citations Open access
Semantic Scholar
Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice.
M. Achour, S. Le Gras, C. Keime, F. Parmentier +5 more
2015Human Molecular Genetics96 citations
Semantic Scholar
Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells
Lucie Carrière, Sébastien Graziani, O. Alibert, Y. Ghavi-Helm +13 more
2011Nucleic Acids Research83 citations Open access
Semantic Scholar
Single-cell gene expression signatures reveal melanoma cell heterogeneity
M. Ennen, C. Keime, D. Kobi, G. Mengus +3 more
2014Oncogene81 citations Open access
Semantic Scholar
Reinstating plasticity and memory in a tauopathy mouse model with an acetyltransferase activator
Snehajyoti Chatterjee, Raphaelle Cassel, Anne Schneider-Anthony, K. Merienne +17 more
2018EMBO Molecular Medicine76 citations Open access
Semantic Scholar
Genes and Pathways Regulated by Androgens in Human Neural Cells, Potential Candidates for the Male Excess in Autism Spectrum Disorder.
A. Quartier, Laure Chatrousse, C. Redin, C. Keime +7 more
2018Biological Psychiatry76 citations
Semantic Scholar
mTOR inhibition reverses acquired endocrine therapy resistance of breast cancer cells at the cell proliferation and gene‐expression levels
S. Ghayad, I. Bièche, J. Vendrell, C. Keime +3 more
2008Cancer Science76 citations Open access
Semantic Scholar
Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma.
G. Davidson, Alexandra Helleux, Y. Vano, V. Lindner +19 more
2023Cancer Research73 citations
Semantic Scholar
Cell-Type-Specific Gene Expression Profiling in Adult Mouse Brain Reveals Normal and Disease-State Signatures.
Nicolas Mérienne, Cécile Meunier, A. Schneider, J. Séguin +10 more
2019Cell Reports73 citations Open access
Semantic Scholar
Enterocyte Purge and Rapid Recovery Is a Resilience Reaction of the Gut Epithelium to Pore-Forming Toxin Attack.
Kwang-Zin Lee, M. Lestradet, C. Socha, S. Schirmeier +11 more
2016Cell Host and Microbe72 citations Open access
Semantic Scholar
Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA
B. Herquel, Khalid Ouararhni, Igor Martianov, S. Le Gras +7 more
2013Nature Structural &Molecular Biology72 citations
Semantic Scholar
MITF-High and MITF-Low Cells and a Novel Subpopulation Expressing Genes of Both Cell States Contribute to Intra- and Intertumoral Heterogeneity of Primary Melanoma
M. Ennen, C. Keime, G. Gambi, A. Kieny +7 more
2017Clinical Cancer Research66 citations
Semantic Scholar
Sphingolipid Metabolism Is Dysregulated at Transcriptomic and Metabolic Levels in the Spinal Cord of an Animal Model of Amyotrophic Lateral Sclerosis
A. Henriques, Vincent Croixmarie, Alexandra Bouscary, Althéa Mosbach +5 more
2018Frontiers in Molecular Neuroscience64 citations Open access
Semantic Scholar
SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion
I. Rosinski-Chupin, J. Briolay, Patrick Brouilly, S. Perrot +7 more
2007Cellular Microbiology59 citations Open access
Semantic Scholar
Extensive Regulation of Diurnal Transcription and Metabolism by Glucocorticoids
B. Weger, M. Weger, Benjamin Görling, Andrea Schink +9 more
2016PLoS Genetics56 citations Open access
Semantic Scholar
Altered enhancer transcription underlies Huntington’s disease striatal transcriptional signature
S. Le Gras, C. Keime, A. Anthony, C. Lotz +5 more
2017Scientific Reports52 citations Open access
Semantic Scholar
Hypoxia-mediated stabilization of HIF1A in prostatic intraepithelial neoplasia promotes cell plasticity and malignant progression
Mohamed A. Abu El Maaty, J. Terzic, C. Keime, D. Rovito +8 more
2022Science Advances51 citations Open access
Semantic Scholar
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production
Julie Piccand, Constance Vagne, Florence Blot, Aline Meunier +16 more
2019bioRxiv48 citations Open access
Semantic Scholar
Transitional B cells in quiescent SLE: an early checkpoint imprinted by IFN
Yannick Dieudonné, V. Gies, A. Guffroy, C. Keime +10 more
2019Journal of Autoimmunity48 citations Open access
Semantic Scholar
Chromatin-Remodelling Complex NURF Is Essential for Differentiation of Adult Melanocyte Stem Cells
D. Koludrovic, P. Laurette, T. Strub, C. Keime +5 more
2015PLoS Genetics48 citations Open access
Semantic Scholar
Inhibition of β-Glucocerebrosidase Activity Preserves Motor Unit Integrity in a Mouse Model of Amyotrophic Lateral Sclerosis
A. Henriques, Mylene Huebecker, H. Blasco, C. Keime +6 more
2017Scientific Reports43 citations Open access
Semantic Scholar
Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level
Pierre Helwi, S. Guillaumie, C. Thibon, C. Keime +6 more
2016BMC Plant Biology43 citations Open access
Semantic Scholar
B cells differentiate in human thymus and express AIRE.
V. Gies, A. Guffroy, F. Danion, P. Billaud +10 more
2017Journal of Allergy and Clinical Immunology36 citations Open access
Semantic Scholar
Genes involved in cell adhesion and signaling: a new repertoire of retinoic acid receptor target genes in mouse embryonic fibroblasts
Z. Al Tanoury, A. Piskunov, Dina Andriamoratsiresy, Samia Gaouar +5 more
2014Journal of Cell Science35 citations
Semantic Scholar
In utero exposure to acetaminophen and ibuprofen leads to intergenerational accelerated reproductive aging in female mice
M. Rossitto, M. Ollivier, S. Déjardin, A. Pruvost +9 more
2019Communications Biology27 citations Open access
Semantic Scholar
Phosphorylation of the retinoic acid receptor RAR&ggr;2 is crucial for the neuronal differentiation of mouse embryonic stem cells
Z. Al Tanoury, Samia Gaouar, A. Piskunov, T. Ye +6 more
2014Journal of Cell Science27 citations Open access
Semantic Scholar
SCA7 Mouse Cerebellar Pathology Reveals Preferential Downregulation of Key Purkinje Cell-Identity Genes and Shared Disease Signature with SCA1 and SCA2
A. Niewiadomska-Cimicka, F. Doussau, J. Pérot, M. Roux +17 more
2020Journal of Neuroscience26 citations Open access
Semantic Scholar
Adhesion receptor ADGRG2/GPR64 is in the GI-tract selectively expressed in mature intestinal tuft cells
Kaare V. Grunddal, S. Tonack, Kristoffer L. Egerod, J. J. Thompson +7 more
2021Molecular Metabolism25 citations Open access
Semantic Scholar
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
Diana Langer, Igor Martianov, D. Alpern, M. Rhinn +4 more
2016Nature Communications25 citations Open access
Semantic Scholar
Single-cell analyses unravel cell type–specific responses to a vitamin D analog in prostatic precancerous lesions
Mohamed A. Abu el Maaty, Élise Grelet, C. Keime, Anna-Isavella Rerra +7 more
2021Science Advances24 citations Open access
Semantic Scholar
Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions
V. Demais, A. Barthelemy, M. Perraut, N. Ungerer +3 more
2016Journal of Neuroscience24 citations Open access
Semantic Scholar
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries
C. Keime, F. Damiola, D. Mouchiroud, L. Duret +1 more
2004BMC Bioinformatics24 citations Open access
Semantic Scholar
Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm
D. Aldea, Lucie Subirana, C. Keime, Lydvina Meister +5 more
2019Nature Ecology & Evolution23 citations
Semantic Scholar
The Bile Acid Nuclear Receptor FXRα Is a Critical Regulator of Mouse Germ Cell Fate
Emmanuelle Martinot, Lauriane Sédes, Marine Baptissart, H. Holota +12 more
2017Stem Cell Reports23 citations Open access
Semantic Scholar
Unexpected observations after mapping LongSAGE tags to the human genome
C. Keime, Marie Sémon, D. Mouchiroud, L. Duret +1 more
2007BMC Bioinformatics21 citations Open access
Semantic Scholar
Global transcription analysis of immature avian erythrocytic progenitors: from self-renewal to differentiation
F. Damiola, C. Keime, S. Gonin-Giraud, S. Dazy +1 more
2004Oncogene21 citations
Semantic Scholar
Gut Microbiota Remodeling and Intestinal Adaptation to Lipid Malabsorption After Enteroendocrine Cell Loss in Adult Mice
Florence Blot, J. Marchix, M. Ejarque, Sara Jiménez +8 more
2023Cellular and Molecular Gastroenterology and Hepatology20 citations Open access
Semantic Scholar
Hypoxia‐inducible factor 1A inhibition overcomes castration resistance of prostate tumors
J. Terzic, Mohamed A. Abu el Maaty, R. Lutzing, Alexandre Vincent +4 more
2023EMBO Molecular Medicine20 citations Open access
Semantic Scholar
Loss of autism-candidate CHD8 perturbs neural crest development and intestinal homeostatic balance
Gaëlle Hayot, Mathieu Massonot, C. Keime, E. Faure +1 more
2022Life Science Alliance19 citations Open access
Semantic Scholar
Hypoxic Environment and Paired Hierarchical 3D and 2D Models of Pediatric H3.3-Mutated Gliomas Recreate the Patient Tumor Complexity
A. Blandin, A. Durand, M. Litzler, Aurelien Tripp +15 more
2019Cancers19 citations Open access
Semantic Scholar
Serial analysis of gene expression in the silkworm, Bombyx mori.
Jian-Hua Huang, X. Miao, W. Jin, P. Couble +11 more
2005Genomics19 citations
Semantic Scholar
Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action
Corinne Bresson, C. Keime, Claudine Faure, Yann Letrillard +5 more
2007BMC Genomics18 citations Open access
Semantic Scholar

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