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M. Chakraborty · SciRah

Researcher profile · Semantic Scholar

M. Chakraborty

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M. Chakraborty — researcher profile on SciRah

h-index: 14
Works: 40
Citations: 1,378

Most-cited papers

Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
M. Chakraborty, James G. Baldwin-Brown, Anthony D. Long, J. J. Emerson
2015bioRxiv448 citations Open access
Semantic Scholar
Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits
M. Chakraborty, J. J. Emerson, S. Macdonald, Anthony D. Long
2019Nature Communications175 citations Open access
Semantic Scholar
Hidden genetic variation shapes the structure of functional elements in Drosophila
M. Chakraborty, Nicholas W. VanKuren, Roy Zhao, Xinwen Zhang +2 more
2017Nature Genetics146 citations Open access
Semantic Scholar
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing
Edwin A. Solares, M. Chakraborty, Danny E. Miller, Shannon Kalsow +4 more
2018G3: Genes, Genomes, Genetics100 citations Open access
Semantic Scholar
Evolution of genome structure in the Drosophila simulans species complex
M. Chakraborty, Ching-Ho Chang, D. Khost, Jeffrey Vedanayagam +6 more
2020bioRxiv90 citations Open access
Semantic Scholar
Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
Yi Liao, Xinwen Zhang, M. Chakraborty, J. J. Emerson
2020bioRxiv73 citations Open access
Semantic Scholar
Behavioral and Genomic Sensory Adaptations Underlying the Pest Activity of Drosophila suzukii
Sylvia M. Durkin, M. Chakraborty, A. Abrieux, K. Lewald +8 more
2020bioRxiv49 citations Open access
Semantic Scholar
Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish
Joseph Heras, M. Chakraborty, J. J. Emerson, D. German
2020Proceedings of the Royal Society B39 citations Open access
Semantic Scholar
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly
M. Chakraborty, A. Ramaiah, Adriana Adolfi, Paige Halas +10 more
2021BMC Biology36 citations Open access
Semantic Scholar
Evidence that Environmental Heterogeneity Maintains a Detoxifying Enzyme Polymorphism in Drosophila melanogaster
M. Chakraborty, J. D. Fry
2015Current Biology35 citations Open access
Semantic Scholar
Two Synthetic 18-Way Outcrossed Populations of Diploid Budding Yeast with Utility for Complex Trait Dissection
R. Linder, A. Majumder, M. Chakraborty, Anthony D. Long
2020Genetics23 citations Open access
Semantic Scholar
The genome trilogy of Anopheles stephensi, an urban malaria vector, reveals structure of a locus associated with adaptation to environmental heterogeneity
A. Thakare, Chaitali Ghosh, Tejashwini Alalamath, Naveen Kumar +13 more
2021Scientific Reports20 citations Open access
Semantic Scholar
Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision in Heliconius butterflies
M. Chakraborty, Angelica Guadalupe Lara, Andrew Dang, Kyle J. McCulloch +9 more
2022bioRxiv17 citations Open access
Semantic Scholar
Rhythm is essential: Unraveling the relation between the circadian clock and cancer
Olajumoke Ogunlusi, Abantika Ghosh, Mrinmoy Sarkar, Kayla Carter +7 more
2025Critical reviews in oncology/hematology14 citations Open access
Semantic Scholar
Deep phylogenomics of a tandem-repeat galectin regulating appendicular skeletal pattern formation
R. Bhat, M. Chakraborty, T. Glimm, Thomas A. Stewart +1 more
2016BMC Evolutionary Biology14 citations Open access
Semantic Scholar
Parallel functional changes in independent testis-specific duplicates of Aldehyde dehydrogenase in Drosophila.
M. Chakraborty, J. D. Fry
2015Molecular biology and evolution14 citations Open access
Semantic Scholar
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly
M. Chakraborty, A. Ramaiah, Adriana Adolfi, Paige Halas +10 more
2022BMC Biology13 citations Open access
Semantic Scholar
Structural Divergence in Vertebrate Phylogeny of a Duplicated Prototype Galectin
R. Bhat, M. Chakraborty, I. Mian, S. Newman
2014Genome Biology and Evolution12 citations Open access
Semantic Scholar
Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales
Ming Hu, Penglong Wan, Cheng-Jie Chen, Shu-Yuan Tang +8 more
2025Molecular biology and evolution11 citations Open access
Semantic Scholar
Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome
Harsh G. Shukla, M. Chakraborty, J. J. Emerson
2024bioRxiv11 citations Open access
Semantic Scholar
Drosophila lacking a homologue of mammalian ALDH2 have multiple fitness defects
M. Chakraborty, J. D. Fry
2011Chemico-Biological Interactions9 citations Open access
Semantic Scholar
Hidden features of the malaria vector mosquito, Anopheles stephensi, revealed by a high-quality reference genome
M. Chakraborty, A. Ramaiah, Adriana Adolfi, Paige Halas +10 more
2020bioRxiv8 citations Open access
Semantic Scholar
A practical guide to de novo genome assembly using long reads
M. Chakraborty, James G. Baldwin-Brown, Anthony D. Long, J. J. Emerson
20157 citations
Semantic Scholar
Genome structural variants shape adaptive success of an invasive urban malaria vector Anopheles stephensi
Alex Samano, Naveen Kumar, Yi Liao, F. Ishtiaq +1 more
2024bioRxiv5 citations Open access
Semantic Scholar
Structural variants exhibit allelic heterogeneity and shape variation in complex traits
M. Chakraborty, J. J. Emerson, S. Macdonald, Anthony D. Long
2018bioRxiv4 citations Open access
Semantic Scholar
Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome
Harsh G. Shukla, M. Chakraborty, J. J. Emerson
2025Genome Research3 citations Open access
Semantic Scholar
Genome Structural Variants Shape Adaptive Success of an Invasive Urban Malaria Vector Anopheles stephensi
Alejandra Samano, Naveen Kumar, Yi Liao, Farah Ishtiaq +1 more
2025Molecular biology and evolution2 citations Open access
Semantic Scholar
VEGF/ERK activation and PI3K inhibition together drive a vein-to-artery transition in an in vitro model of human angiogenesis
Z. Amir Ugokwe, A. Pyke, E. Trimm, M. Chakraborty +4 more
2025bioRxiv1 citations
Semantic Scholar
Structural variants are enriched in deleterious visible phenotypes in Drosophila
Alejandra Samano, Matthew Musat, Mihir Junaghare, Asad Ahmad +9 more
2025bioRxiv1 citations
Semantic Scholar
Physiological genomics of dietary adaptation in a marine herbivorous fish
Joseph Heras, M. Chakraborty, J. J. Emerson, D. German
2018bioRxiv1 citations Open access
Semantic Scholar
A conserved architectural domain shapes centromere evolution in Drosophila
Alejandra Samano, M. Chakraborty
2026bioRxiv0 citations Open access
Semantic Scholar
Structural variants are enriched in deleterious visible phenotypes in Drosophila
Alejandra Samano, Matthew Musat, Mihir Junaghare, Asad Ahmad +9 more
2026Genome Research0 citations Open access
Semantic Scholar
Higher-order Architecture Shapes Concerted Evolution in a Y-linked repeat array
Adolfo A. Delgado, Alejandra Samano, M. Chakraborty
2026bioRxiv0 citations Open access
Semantic Scholar
Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline
Ming Hu, Penglong Wan, Cheng-Jie Chen, Shu-Yuan Tang +8 more
2025bioRxiv0 citations Open access
Semantic Scholar
Transcriptomic Profiling of Peripheral Blood Mononuclear Cells Reveals Key Molecular Signatures in Chronic Kidney Disease Patients with Heart Failure
M. Shafreen, M. Chakraborty, L. Patil, S. Navamani +4 more
2025medRxiv0 citations Open access
Semantic Scholar
Supplementary Materials including Figures and Tables from Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish
Joseph Heras, M. Chakraborty, J. J. Emerson, D. German
20200 citations
Semantic Scholar
Supplementary material from "Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish"
Joseph Heras, M. Chakraborty, J. J. Emerson, D. German
20200 citations
Semantic Scholar
Title Hidden genetic variation shapes the structure of functional elements in Drosophila Permalink
M. Chakraborty, Nicholas W. VanKuren, Roy Zhao, Xinwen Zhang +3 more
20170 citations
Semantic Scholar
G3 Reviewer Index 2015
S. Abedon, K. Adams, S. Ahn, S. Aird +172 more
2015G3: Genes, Genomes, Genetics0 citations Open access
Semantic Scholar
Adaptive Constraint and its Natural Rescuers: Insights from Drosophila Aldehyde Dehydrogenase
M. Chakraborty
20140 citations
Semantic Scholar

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