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Qian Cong · SciRah

Researcher profile · Semantic Scholar

Qian Cong

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Qian Cong — researcher profile on SciRah

h-index: 35
Works: 187
Citations: 9,322

Most-cited papers

Efficient and accurate prediction of protein structure using RoseTTAFold2
M. Baek, I. Anishchenko, Ian R. Humphreys, Qian Cong +2 more
2023bioRxiv148 citations Open access
Semantic Scholar
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
Yaxi Wang, Larry A. Gallagher, Pia Andrade, Andi Liu +12 more
2023Cell99 citations Open access
Semantic Scholar
Predicting protein-protein interactions in the human proteome
Jing Zhang, Ian R. Humphreys, Ji-Min Pei, Jinuk Kim +8 more
2025Science98 citations Open access
Semantic Scholar
A tissue injury sensing and repair pathway distinct from host pathogen defense
Siqi Liu, Yun Ha Hur, Xin Cai, Qian Cong +17 more
2023Cell97 citations Open access
Semantic Scholar
Recent advances in predicting and modeling protein-protein interactions.
J. Durham, Jing Zhang, I. Humphreys, Ji-Min Pei +1 more
2023TIBS -Trends in Biochemical Sciences. Regular ed69 citations
Semantic Scholar
Accelerating Biomolecular Modeling with AtomWorks and RF3
Nathaniel Corley, Simon V. Mathis, Rohith Krishna, Magnus S. Bauer +26 more
2025bioRxiv52 citations Open access
Semantic Scholar
Assessment of nucleic acid structure prediction in CASP16
R. Kretsch, Alissa M. Hummer, Shujun He, Rong-Qing Yuan +5 more
2025bioRxiv50 citations Open access
Semantic Scholar
Revolutionizing protein-protein interaction prediction with deep learning.
Jing Zhang, J. Durham, Qian Cong
2024Current Opinion in Structural Biology46 citations
Semantic Scholar
Protein interactions in human pathogens revealed through deep learning
Ian R. Humphreys, Jing Zhang, M. Baek, Ya-Xi Wang +11 more
2024Nature Microbiology43 citations Open access
Semantic Scholar
ECOD: integrating classifications of protein domains from experimental and predicted structures
R. D. Schaeffer, K. Medvedev, Antonina Andreeva, S. Chuguransky +5 more
2024Nucleic Acids Research34 citations Open access
Semantic Scholar
Classification of domains in predicted structures of the human proteome
R. D. Schaeffer, Jing Zhang, Lisa N. Kinch, Ji-Min Pei +2 more
2023Proceedings of the National Academy of Sciences of the United States of America32 citations Open access
Semantic Scholar
Computed cancer interactome explains the effects of somatic mutations in cancers
Jing Zhang, Ji-Min Pei, J. Durham, T. Bos +1 more
2022bioRxiv28 citations Open access
Semantic Scholar
Taxonomic changes suggested by the genomic analysis of Hesperiidae (Lepidoptera)
Jing Zhang, Qian Cong, Jin-Hui Shen, N. Grishin
2022Insecta mundi28 citations
Semantic Scholar
Co-component signal transduction systems: Fast-evolving virulence regulation cassettes discovered in enteric bacteria
Lisa N. Kinch, Qian Cong, J. Jaishankar, K. Orth
2022bioRxiv27 citations Open access
Semantic Scholar
CASP16 Protein Monomer Structure Prediction Assessment
Rong-Qing Yuan, Jing Zhang, A. Kryshtafovych, R. D. Schaeffer +3 more
2025bioRxiv26 citations Open access
Semantic Scholar
Assessment of Protein Complex Predictions in CASP16: Are we making progress?
Jing Zhang, Rong-Qing Yuan, A. Kryshtafovych, R. Kretsch +5 more
2025bioRxiv26 citations Open access
Semantic Scholar
Computing the human interactome
Jing Zhang, Ian R. Humphreys, Ji-Min Pei, Jinuk Kim +8 more
2024bioRxiv25 citations
Semantic Scholar
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2
R. D. Schaeffer, Jing Zhang, K. Medvedev, Lisa N. Kinch +2 more
2024PLoS Comput. Biol.20 citations Open access
Semantic Scholar
Taxonomic discoveries enabled by genomic analysis of butterflies
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +7 more
2022The taxonomic report of the International Lepidoptera Survey18 citations
Semantic Scholar
Recent progress and future challenges in structure-based protein-protein interaction prediction
Rong-Qing Yuan, Jing Zhang, Jian Zhou, Qian Cong
2025Molecular Therapy17 citations Open access
Semantic Scholar
Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models
Ji-Min Pei, Antonina Andreeva, S. Chuguransky, Beatriz Lázaro Pinto +5 more
2024Journal of Molecular Biology15 citations Open access
Semantic Scholar
Genomics-based higher classification of the species-rich Hairstreaks (Lepidoptera: Lycaenidae: Eumaeini)
R. Robbins, Qian Cong, Jing Zhang, Jin-Hui Shen +7 more
2022Systematic Entomology15 citations Open access
Semantic Scholar
Assessing risk for butterflies in the context of climate change, demographic uncertainty, and heterogeneous data sources
M. Forister, E. Grames, C. A. Halsch, Kevin J. Burls +10 more
2023Ecological Monographs14 citations Open access
Semantic Scholar
Assessment of Nucleic Acid Structure Prediction in CASP16
R. Kretsch, Alissa M. Hummer, Shujun He, Rong-Qing Yuan +5 more
2025Proteins: Structure, Function, and Bioinformatics13 citations Open access
Semantic Scholar
A structural atlas of death domain fold proteins reveals their versatile roles in biology and function
Emily Wu, Ankita T Kandalkar, Julian F. Ehrmann, Alexander B. Tong +3 more
2025Proceedings of the National Academy of Sciences of the United States of America12 citations
Semantic Scholar
Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands
K. Medvedev, Jing Zhang, R. D. Schaeffer, Lisa N. Kinch +2 more
2024bioRxiv11 citations Open access
Semantic Scholar
What one genus of showy moths can say about migration, adaptation, and wing pattern
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +4 more
2024Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold
Ji-Min Pei, Qian Cong
2023Database J. Biol. Databases Curation11 citations Open access
Semantic Scholar
Computational analysis of protein–protein interactions of cancer drivers in renal cell carcinoma
Ji-Min Pei, Jing Zhang, Qian Cong
2023FEBS Open Bio11 citations Open access
Semantic Scholar
NUDT5 regulates purine metabolism and thiopurine sensitivity by interacting with PPAT
Zheng Wu, Phong T. Nguyen, Varun Sondhi, Run-Wen Yao +23 more
2025Science10 citations Open access
Semantic Scholar
Assessment of Protein Complex Predictions in CASP16: Are We Making Progress?
Jing Zhang, Rong-Qing Yuan, A. Kryshtafovych, Ji-Min Pei +6 more
2025Proteins: Structure, Function, and Bioinformatics10 citations Open access
Semantic Scholar
Orthogonalized human protease control of secreted signals
Carlos A. Aldrete, Connor C. Call, Lucas E. Sant'Anna, Alexander E. Vlahos +3 more
2024bioRxiv10 citations Open access
Semantic Scholar
Butterfly classification and species discovery using genomics
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +1 more
2023The taxonomic report of the International Lepidoptera Survey10 citations Open access
Semantic Scholar
Impact of Asp/Glu-ADP-ribosylation on protein-protein interaction and protein function
Ji-Min Pei, Jing Zhang, Xu-dong Wang, Chiho Kim +2 more
2022Proteomics8 citations Open access
Semantic Scholar
Descriptions of three hundred new species of Hesperiidae (Lepidoptera: Papilionoidea)
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +1 more
2025Insecta mundi6 citations Open access
Semantic Scholar
Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome
Lisa N. Kinch, R. D. Schaeffer, Jing Zhang, Qian Cong +2 more
2023mSystems6 citations Open access
Semantic Scholar
Additional taxonomic refinements suggested by genomic analysis of butterflies
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +2 more
2023The taxonomic report of the International Lepidoptera Survey6 citations Open access
Semantic Scholar
NUDT5 regulates purine metabolism and thiopurine sensitivity by interacting with PPAT
Zheng Wu, Phong T. Nguyen, Varun Sondhi, Run-Wen Yao +19 more
2025bioRxiv5 citations Open access
Semantic Scholar
Orthogonalized human protease control of secreted signals
Carlos A. Aldrete, Connor C. Call, Lucas E. Sant'Anna, Alexander E. Vlahos +3 more
2025Nature Chemical Biology5 citations Open access
Semantic Scholar
Taxonomic advances driven by the genomic analysis of butterflies
Jing Zhang, Qian Cong, Jin-Hui Shen, Lei-Na Song +1 more
2024The taxonomic report of the International Lepidoptera Survey5 citations
Semantic Scholar
Genetic and Microbial Analysis of Invasiveness for Escherichia coli Strains Associated With Inflammatory Bowel Disease
Jungyeon Kim, Jing Zhang, Lisa N. Kinch, Jin-Hui Shen +8 more
2024bioRxiv5 citations Open access
Semantic Scholar
Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alphéraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to Wolbachia Infection
N. Shapoval, A. Kir'yanov, A. Krupitsky, R. Yakovlev +6 more
2023Insects5 citations Open access
Semantic Scholar
Checking the checkered taxonomy of Plötz’s checkered skippers (Hesperiidae: Pyrgini)
Jing Zhang, Qian Cong, J. Burns, N. Grishin
2022The taxonomic report of the International Lepidoptera Survey5 citations Open access
Semantic Scholar
DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence
J. Durham, Jing Zhang, R. D. Schaeffer, Qian Cong
2024Bioinform.4 citations Open access
Semantic Scholar
Computational analysis of propeptide‐containing proteins and prediction of their post‐cleavage conformation changes
Ji-Min Pei, Lisa N. Kinch, Qian Cong
2024Proteins: Structure, Function, and Bioinformatics4 citations Open access
Semantic Scholar
Computational analysis of regulatory regions in human protein kinases
Ji-Min Pei, Qian Cong
2023Protein Science4 citations Open access
Semantic Scholar
Descriptions of one hundred new species of Hesperiidae
Jing Zhang, Qian Cong, Nick V. Grishin
2023Insecta mundi4 citations
Semantic Scholar
Taxonomic notes on Neotropical Hesperiidae (Lepidoptera).
Jing Zhang, D. R. Dolibaina, Qian Cong, Jin-Hui Shen +5 more
2023Zootaxa4 citations Open access
Semantic Scholar
Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas
Jing Zhang, Qian Cong, N. Grishin
2023Insecta mundi4 citations
Semantic Scholar
ECOD: Classification of domains in AFDB Swiss-Prot structure predictions
R. Schaeffer, Jing Zhang, Qian Cong, Nick V. Grishin
2025bioRxiv3 citations Open access
Semantic Scholar

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