P. Stodghill

Most-cited papers

Automated application-level checkpointing of MPI programs
G. Bronevetsky, Daniel Marques, K. Pingali, P. Stodghill
2003ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming227 citations Open access
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A comparison of empirical and model-driven optimization
K. Yotov, Xiao-Ming Li, Gang Ren, M. Cibulskis +6 more
2003ACM-SIGPLAN Symposium on Programming Language Design and Implementation204 citations
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Is Search Really Necessary to Generate High-Performance BLAS?
K. Yotov, Xiao-Ming Li, Gang Ren, M. Garzarán +3 more
2005Proceedings of the IEEE178 citations
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Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity
M. Filiatrault, P. Stodghill, P. Bronstein, Simon Moll +12 more
2010Journal of Bacteriology136 citations Open access
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Pseudomonas syringae pv. tomato DC3000 type III secretion effector polymutants reveal an interplay between HopAD1 and AvrPtoB
Hai-Lei Wei, S. Chakravarthy, J. Mathieu, Tyler C. Helmann +4 more
2015Cell Host and Microbe131 citations Open access
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Dependence flow graphs: an algebraic approach to program dependencies
K. Pingali, M. Beck, Richard Johnson, M. Moudgill +1 more
1991ACM-SIGACT Symposium on Principles of Programming Languages103 citations Open access
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Implementation and Evaluation of a Scalable Application-Level Checkpoint-Recovery Scheme for MPI Programs
M. Schulz, G. Bronevetsky, Rohit Fernandes, Daniel Marques +2 more
2004Proceedings of the ACM/IEEE SC2004 Conference91 citations
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Solving Alignment Using Elementary Linear Algebra
David Bau, Induprakas Kodukula, V. Kotlyar, K. Pingali +1 more
1994Compiler Optimizations for Scalable Parallel Systems Languages84 citations Open access
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A Relational Approach to the Compilation of Sparse Matrix Programs
V. Kotlyar, K. Pingali, P. Stodghill
1997European Conference on Parallel Processing81 citations Open access
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Next-generation generic programming and its application to sparse matrix computations
N. Mateev, K. Pingali, P. Stodghill, V. Kotlyar
2000International Conference on Supercomputing70 citations
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Automatic measurement of memory hierarchy parameters
K. Yotov, K. Pingali, P. Stodghill
2005Measurement and Modeling of Computer Systems66 citations Open access
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Characterization of the Fur Regulon in Pseudomonas syringae pv. tomato DC3000
Bronwyn G. Butcher, P. Bronstein, C. Myers, P. Stodghill +8 more
2011Journal of Bacteriology59 citations Open access
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AlgU Controls Expression of Virulence Genes in Pseudomonas syringae pv. tomato DC3000
E. Markel, P. Stodghill, Zhongmeng Bao, C. Myers +1 more
2016Journal of Bacteriology54 citations Open access
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Ca2+-Induced Two-Component System CvsSR Regulates the Type III Secretion System and the Extracytoplasmic Function Sigma Factor AlgU in Pseudomonas syringae pv. tomato DC3000
Maxwell R. Fishman, Johnson Zhang, P. Bronstein, P. Stodghill +1 more
2017Journal of Bacteriology51 citations Open access
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C3: A System for Automating Application-Level Checkpointing of MPI Programs
G. Bronevetsky, Daniel Marques, K. Pingali, P. Stodghill
2003International Workshop on Languages and Compilers for Parallel Computing51 citations
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Recent advances in checkpoint/recovery systems
G. Bronevetsky, Rohit Fernandes, Daniel Marques, K. Pingali +1 more
2006Proceedings 20th IEEE International Parallel & Distributed Processing Symposium50 citations
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CrcZ and CrcX regulate carbon source utilization in Pseudomonas syringae pathovar tomato strain DC3000
M. Filiatrault, P. Stodghill, Janet Wilson, Bronwyn G. Butcher +3 more
2013RNA Biology48 citations Open access
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Global Analysis of the HrpL Regulon in the Plant Pathogen Pseudomonas syringae pv. tomato DC3000 Reveals New Regulon Members with Diverse Functions
H. Lam, S. Chakravarthy, Hai-Lei Wei, H. Buinguyen +4 more
2014PLoS ONE47 citations Open access
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Construction of an rsmX co-variance model and identification of five rsmX non-coding RNAs in Pseudomonas syringae pv. tomato DC3000
Simon Moll, David J. Schneider, P. Stodghill, C. Myers +2 more
2010RNA Biology45 citations Open access
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Think globally, search locally
K. Yotov, K. Pingali, P. Stodghill
2005International Conference on Supercomputing43 citations
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Collective operations in application-level fault-tolerant MPI
G. Bronevetsky, Daniel Marques, K. Pingali, P. Stodghill
2003International Conference on Supercomputing40 citations
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Collective Operations in an Application-level Fault Tolerant MPI System
G. Bronevetsky, Daniel Marques, K. Pingali, P. Stodghill
200338 citations
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Mobile MPI programs in computational grids
Rohit Fernandes, K. Pingali, P. Stodghill
2006ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming37 citations
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Genome-Wide Identification of Transcriptional Start Sites in the Plant Pathogen Pseudomonas syringae pv. tomato str. DC3000
M. Filiatrault, P. Stodghill, C. Myers, P. Bronstein +7 more
2011PLoS ONE35 citations Open access
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A Relational Approach to the Automatic Generation of Sequential Sparse matrix Codes
P. Stodghill
199732 citations
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X-ray: a tool for automatic measurement of hardware parameters
K. Yotov, K. Pingali, P. Stodghill
2005International Conference on Quantitative Evaluation of Systems31 citations
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An Extracytoplasmic Function Sigma Factor-Mediated Cell Surface Signaling System in Pseudomonas syringae pv. tomato DC3000 Regulates Gene Expression in Response to Heterologous Siderophores
E. Markel, Charlene Maciak, Bronwyn G. Butcher, C. Myers +4 more
2011Journal of Bacteriology30 citations Open access
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Experimental evaluation of application-level checkpointing for OpenMP programs
G. Bronevetsky, K. Pingali, P. Stodghill
2006International Conference on Supercomputing30 citations
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A Framework for Sparse Matrix Code Synthesis from High-level Specifications
Nawaaz Ahmed, N. Mateev, K. Pingali, P. Stodghill
2000International Conference on Software Composition30 citations
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Identification of Indole-3-Acetic Acid-Regulated Genes in Pseudomonas syringae pv. tomato Strain DC3000
A. Djami-Tchatchou, Zi-Peng A. Li, P. Stodghill, M. Filiatrault +1 more
2021Journal of Bacteriology29 citations Open access
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Compiling Parallel Code for Sparse Matrix Applications
V. Kotlyar, K. Pingali, P. Stodghill
1997International Conference on Software Composition26 citations Open access
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Optimizing checkpoint sizes in the C3 system
Daniel Marques, G. Bronevetsky, Rohit Fernandes, K. Pingali +1 more
2005IEEE International Parallel and Distributed Processing Symposium24 citations
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Parallel FEM Simulation of Crack Propagation - Challenges, Status, and Perspectives
Bruce Carter, Chuin-Shan Chen, L. Chew, Nikos Chrisochoides +10 more
2000IPDPS Workshops24 citations
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Landing CG on EARTH: A Case Study of Fine-Grained Multithreading on an Evolutionary Path
K. Theobald, G. Agrawal, Rishi Kumar, G. Heber +3 more
2000International Conference on Software Composition17 citations
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Compiling Parallel Sparse Code for User(cid:0)De(cid:1)ned Data
V. Kotlyar, K. Pingali, P. Stodghill
199717 citations
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Genomic Plasticity Enables Phenotypic Variation of Pseudomonas syringae pv. tomato DC3000
Zhongmeng Bao, P. Stodghill, C. Myers, H. Lam +7 more
2014PLoS ONE15 citations Open access
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Regulons of Three Pseudomonas syringae pv. tomato DC3000 Iron Starvation Sigma Factors
E. Markel, Bronwyn G. Butcher, C. Myers, P. Stodghill +2 more
2012Applied and Environmental Microbiology13 citations Open access
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A distributed system based on web services for computational science simulations
K. Pingali, P. Stodghill
2006International Conference on Supercomputing12 citations
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Automatic Measurement of Instruction Cache Capacity
K. Yotov, Sandra J. Jackson, Tyler Steele, K. Pingali +1 more
2005International Workshop on Languages and Compilers for Parallel Computing12 citations
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The Context Sensitivity Problem in Biological Sequence Segmentation
S. Cheong, P. Stodghill, David J. Schneider, S. Cartinhour +1 more
200911 citations
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Computational Science Simulations Based on Web Services
L. Chew, Nikos Chrisochoides, S. Gopalsamy, G. Heber +10 more
2003International Conference on Conceptual Structures11 citations
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Genome-Wide Identification of Genes Important for Growth of Dickeya dadantii and Dickeya dianthicola in Potato (Solanum tuberosum) Tubers
Tyler C. Helmann, M. Filiatrault, P. Stodghill
2022Frontiers in Microbiology9 citations Open access
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Analysis of the small RNA spf in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000.
So Hae Park, Zhongmeng Bao, Bronwyn G. Butcher, Katherine M. D'Amico +5 more
2014Microbiology9 citations Open access
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Extending the Recursive Jensen-Shannon Segmentation of Biological Sequences
S. Cheong, P. Stodghill, David J. Schneider, S. Cartinhour +1 more
20099 citations
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Plasmids encode and can mobilize onion pathogenicity in Pantoea agglomerans
G. Shin, J. Asselin, Amy Smith, B. Aegerter +20 more
2024bioRxiv8 citations Open access
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Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato
Xing Ma, N. Perna, Jeremy D. Glasner, Jian-Jun J. Hao +8 more
2019Microbiology Resource Announcements8 citations Open access
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Use-Cases and Requirements for Grid Checkpoint and Recovery
R. Badia, Robert T. Hood, T. Kielmann, A. Merzky +6 more
20078 citations
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O'SOAP - A Web Services Framework for DDDAS Applications
K. Pingali, P. Stodghill
2004International Conference on Conceptual Structures8 citations Open access
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Plasmids encode and can mobilize onion pathogenicity in Pantoea agglomerans.
G. Shin, J. Asselin, Amy Smith, B. Aegerter +20 more
2025The ISME Journal7 citations Open access
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The ECF sigma factor, PSPTO_1043, in Pseudomonas syringae pv. tomato DC3000 is induced by oxidative stress and regulates genes involved in oxidative stress response
Bronwyn G. Butcher, Zhongmeng Bao, Janet Wilson, P. Stodghill +4 more
2017PLoS ONE7 citations Open access
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