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N. Perna · SciRah

Researcher profile · Semantic Scholar

N. Perna

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N. Perna — researcher profile on SciRah

h-index: 47
Works: 102
Citations: 30K

Most-cited papers

The complete genome sequence of Escherichia coli K-12.
F. Blattner, Guy Plunkett, C. Bloch, N. Perna +13 more
1997Science7,927 citations
Semantic Scholar
Mauve: multiple alignment of conserved genomic sequence with rearrangements.
A. Darling, B. Mau, F. Blattner, N. Perna
2004Genome Research4,720 citations Open access
Semantic Scholar
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
A. Darling, B. Mau, N. Perna
2010PLoS ONE3,815 citations Open access
Semantic Scholar
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
N. Perna, Guy Plunkett, V. Burland, B. Mau +24 more
2001Nature2,103 citations Open access
Semantic Scholar
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
R. A. Welch, V. Burland, Guy Plunkett, P. Redford +15 more
2002Proceedings of the National Academy of Sciences of the United States of America1,545 citations Open access
Semantic Scholar
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
N. Perna, T. Kocher
1995Journal of Molecular Evolution1,115 citations
Semantic Scholar
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
N. Perna, T. Kocher
2004Journal of Molecular Evolution719 citations
Semantic Scholar
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
M. Riley, Takashi Abe, M. Arnaud, M. B. Berlyn +15 more
2006Nucleic Acids Research635 citations Open access
Semantic Scholar
Reordering contigs of draft genomes using the Mauve Aligner
Anna I. Rissman, B. Mau, B. Biehl, A. Darling +2 more
2009Bioinform.554 citations Open access
Semantic Scholar
Genome Sequence of Yersinia pestis KIM
W. Deng, V. Burland, Guy Plunkett, A. Boutin +17 more
2002Journal of Bacteriology523 citations Open access
Semantic Scholar
Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7
N. Perna, G. Mayhew, G. Pósfai, S. Elliott +3 more
1998Infection and Immunity459 citations Open access
Semantic Scholar
Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya.
B. Ma, Michael E. Hibbing, Hyesook Kim, R. Reedy +7 more
2007Phytopathology434 citations
Semantic Scholar
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T
J. Wei, M. Goldberg, V. Burland, M. Venkatesan +13 more
2003Infection and Immunity423 citations Open access
Semantic Scholar
The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7.
V. Burland, Y. Shao, N. Perna, Guy Plunkett +2 more
1998Nucleic Acids Research371 citations Open access
Semantic Scholar
The role of secretion systems and small molecules in soft-rot Enterobacteriaceae pathogenicity.
A. Charkowski, C. Blanco, G. Condemine, D. Expert +19 more
2012Annual Review of Phytopathology225 citations Open access
Semantic Scholar
Identification and Characterization of lpfABCC′DE, a Fimbrial Operon of Enterohemorrhagic Escherichia coli O157:H7
Alfredo G. Torres, J. Girón, N. Perna, V. Burland +3 more
2002Infection and Immunity200 citations Open access
Semantic Scholar
ASAP, a systematic annotation package for community analysis of genomes
Jeremy D. Glasner, Paul Liss, Guy Plunkett, A. Darling +7 more
2003Nucleic Acids Res.180 citations Open access
Semantic Scholar
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
J. Broadbent, E. Neeno-Eckwall, B. Stahl, K. Tandee +7 more
2012BMC Genomics151 citations Open access
Semantic Scholar
Insight into the Transmission Biology and Species-Specific Functional Capabilities of Tsetse (Diptera: Glossinidae) Obligate Symbiont Wigglesworthia
R. Rio, R. Symula, Jing-Wen Wang, C. Lohs +8 more
2012mBio148 citations Open access
Semantic Scholar
Genomic Variability of O Islands Encoding Tellurite Resistance in Enterohemorrhagic Escherichia coli O157:H7 Isolates
Diane E. Taylor, Michelle M. Rooker, M. Keelan, L. Ng +4 more
2002Journal of Bacteriology145 citations Open access
Semantic Scholar
Directed Evolution of Ionizing Radiation Resistance in Escherichia coli
D. R. Harris, S. Pollock, E. Wood, Reece J. Goiffon +18 more
2009Journal of Bacteriology137 citations Open access
Semantic Scholar
Description of the Transcriptomes of Immune Response-Activated Hemocytes from the Mosquito Vectors Aedes aegypti and Armigeres subalbatus
L. Bartholomay, Wen-Long Cho, T. Rocheleau, J. Boyle +18 more
2004Infection and Immunity135 citations Open access
Semantic Scholar
hrp genes of Erwinia chrysanthemi 3937 are important virulence factors.
Ching-Hong Yang, M. Gavilanes-Ruíz, Y. Okinaka, R. Vedel +5 more
2002Molecular Plant-Microbe Interactions133 citations Open access
Semantic Scholar
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
N. Perna, Guy Plunkett, V. Burland, B. Mau +24 more
1996123 citations
Semantic Scholar
Alu insertion polymorphism: a new type of marker for human population studies.
N. Perna, M. Batzer, P. Deininger, M. Stoneking
1992Human Biology: The Official Publication of the American Association of Anthropological Genetics119 citations
Semantic Scholar
Mitochondrial DNA: molecular fossils in the nucleus.
N. Perna, T. Kocher
1996Current Biology118 citations Open access
Semantic Scholar
Complete Genome Sequence of the Plant Pathogen Erwinia amylovora Strain ATCC 49946
M. Sebaihia, A. Bocsanczy, B. Biehl, M. Quail +8 more
2010Journal of Bacteriology117 citations Open access
Semantic Scholar
Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937
Jeremy D. Glasner, Ching-Hong Yang, S. Reverchon, N. Hugouvieux-Cotte-Pattat +43 more
2011Journal of Bacteriology116 citations Open access
Semantic Scholar
Niche-specificity and the variable fraction of the Pectobacterium pan-genome.
Jeremy D. Glasner, M. Marquez-Villavicencio, H. Kim, C. Jahn +10 more
2008Molecular Plant-Microbe Interactions112 citations Open access
Semantic Scholar
Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli
Alfredo G. Torres, N. Perna, V. Burland, A. Ruknudin +2 more
2002Molecular Microbiology112 citations
Semantic Scholar
Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts.
P. Rodríguez-Palenzuela, I. M. Matas, J. Murillo, Emilia López-Solanilla +12 more
2010Environmental Microbiology109 citations Open access
Semantic Scholar
Strains of Escherichia coli O157:H7 Differ Primarily by Insertions or Deletions, Not Single-Nucleotide Polymorphisms
I. Kudva, P. Evans, N. Perna, T. Barrett +3 more
2002Journal of Bacteriology104 citations Open access
Semantic Scholar
Phylogeny and Virulence of Naturally Occurring Type III Secretion System-Deficient Pectobacterium Strains
Hyesook Kim, B. Ma, N. Perna, A. Charkowski
2009Applied and Environmental Microbiology94 citations Open access
Semantic Scholar
A Genomic Sample Sequence of the Entomopathogenic Bacterium Photorhabdus luminescens W14: Potential Implications for Virulence
R. ffrench-Constant, N. Waterfield, V. Burland, N. Perna +3 more
2000Applied and Environmental Microbiology94 citations Open access
Semantic Scholar
Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi 3937 using a GFP-based IVET leaf array.
Shi-Hui Yang, N. Perna, D. Cooksey, Y. Okinaka +4 more
2004Molecular Plant-Microbe Interactions93 citations
Semantic Scholar
Shotgun optical maps of the whole Escherichia coli O157:H7 genome.
A. Lim, E. Dimalanta, Konstantinos D. Potamousis, G. Yen +15 more
2001Genome Research89 citations Open access
Semantic Scholar
Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair
Rose T. Byrne, Audrey J. Klingele, E. L. Cabot, W. Schackwitz +9 more
2014eLife86 citations Open access
Semantic Scholar
Sepsis and Hemocyte Loss in Honey Bees (Apis mellifera) Infected with Serratia marcescens Strain Sicaria
Nancy L. Burritt, Nicole Foss, E. Neeno-Eckwall, J. O. Church +5 more
2016PLoS ONE84 citations Open access
Semantic Scholar
Microarray profiling of Erwinia chrysanthemi 3937 genes that are regulated during plant infection.
Y. Okinaka, Ching-Hong Yang, N. Perna, N. Keen
2002Molecular Plant-Microbe Interactions82 citations Open access
Semantic Scholar
The evolution of metabolic networks of E. coli
David J. Baumler, R. Peplinski, Jennifer L. Reed, Jeremy D. Glasner +1 more
2011BMC Systems Biology76 citations Open access
Semantic Scholar
Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
B. Mau, Jeremy D. Glasner, A. Darling, N. Perna
2006Genome Biology71 citations Open access
Semantic Scholar
A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM
Shi-Guo Zhou, W. Deng, T. Anantharaman, A. Lim +20 more
2002Applied and Environmental Microbiology69 citations Open access
Semantic Scholar
Analyzing patterns of microbial evolution using the mauve genome alignment system.
A. Darling, Todd J. Treangen, X. Messeguer, N. Perna
2007Methods in molecular biology66 citations
Semantic Scholar
Unequal Base Frequencies and the Estimation of Substitution Rates
N. Perna, T. Kocher
199565 citations Open access
Semantic Scholar
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data
Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett +6 more
2005Nucleic Acids Res.63 citations Open access
Semantic Scholar
Urease of Enterohemorrhagic Escherichia coli: Evidence for Regulation by Fur and a trans-Acting Factor
S. Heimer, R. A. Welch, N. Perna, G. Pósfai +4 more
2002Infection and Immunity48 citations Open access
Semantic Scholar
Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria
Lavanya Babujee, J. Apodaca, Venkatesh Balakrishnan, Paul Liss +4 more
2012BMC Genomics44 citations Open access
Semantic Scholar
erratum Genome sequence of enterohaemorrhagic Escherichia coli 0157:H7
N. Perna, Guy Plunkett, V. Burland, B. Mau +24 more
2001Nature40 citations Open access
Semantic Scholar
Tailoring a Global Iron Regulon to a Uropathogen
R. Banerjee, Erin Weisenhorn, K. Schwartz, Kevin S. Myers +5 more
2020mBio34 citations Open access
Semantic Scholar
Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology
Trudy A. Torto-Alalibo, C. Collmer, Michelle Gwinn-Giglio, M. Lindeberg +13 more
2010Microbiology and Molecular Biology Reviews34 citations Open access
Semantic Scholar

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