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D. Piovesan · SciRah

Researcher profile · Semantic Scholar

D. Piovesan

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D. Piovesan — researcher profile on SciRah

h-index: 41
Works: 129
Citations: 13K

Most-cited papers

The Pfam protein families database in 2019
S. El-Gebali, J. Mistry, A. Bateman, S. Eddy +12 more
2018Nucleic Acids Res.4,066 citations Open access
Semantic Scholar
InterPro in 2017—beyond protein family and domain annotations
R. Finn, T. Attwood, P. Babbitt, A. Bateman +43 more
2016Nucleic Acids Res.1,408 citations Open access
Semantic Scholar
InterPro: the protein sequence classification resource in 2025
Matthias Blum, Antonina Andreeva, L. Florentino, S. Chuguransky +30 more
2024Nucleic Acids Research1,022 citations Open access
Semantic Scholar
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Nai-Hui Zhou, Yuxiang Jiang, T. Bergquist, Alexandra J. Lee +163 more
2019Genome Biology451 citations Open access
Semantic Scholar
The RING 2.0 web server for high quality residue interaction networks
D. Piovesan, Giovanni Minervini, S. Tosatto
2016Nucleic Acids Res.393 citations Open access
Semantic Scholar
Critical assessment of protein intrinsic disorder prediction
M. Necci, D. Piovesan, Caid Predictors, DisProt Curators +1 more
2020Nature Methods294 citations Open access
Semantic Scholar
DOME: recommendations for supervised machine learning validation in biology
Ian Walsh, D. Fishman, D. García-Gasulla, Tiina Titma +32 more
2021Nature Methods248 citations Open access
Semantic Scholar
DisProt: intrinsic protein disorder annotation in 2020
András Hatos, Borbála Hajdu-Soltész, A. Monzon, Nicolás Palopoli +60 more
2019Nucleic Acids Res.206 citations Open access
Semantic Scholar
DisProt 7.0: a major update of the database of disordered proteins
D. Piovesan, Francesco Tabaro, I. Mičetić, M. Necci +36 more
2016Nucleic Acids Res.202 citations Open access
Semantic Scholar
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
D. Piovesan, Francesco Tabaro, L. Paladin, M. Necci +13 more
2017Nucleic Acids Res.195 citations Open access
Semantic Scholar
MobiDB: intrinsically disordered proteins in 2021
D. Piovesan, M. Necci, Nahuel Escobedo, A. Monzon +11 more
2020Nucleic Acids Res.192 citations Open access
Semantic Scholar
MobiDB‐lite: fast and highly specific consensus prediction of intrinsic disorder in proteins
M. Necci, D. Piovesan, Z. Dosztányi, S. Tosatto
2017Bioinform.184 citations Open access
Semantic Scholar
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Yuxiang Jiang, T. Oron, W. Clark, Asma R. Bankapur +143 more
2016Genome Biology155 citations Open access
Semantic Scholar
Intrinsic protein disorder and conditional folding in AlphaFoldDB
D. Piovesan, A. Monzon, S. Tosatto
2022Protein Science140 citations Open access
Semantic Scholar
DisProt in 2024: improving function annotation of intrinsically disordered proteins
M. C. Aspromonte, María Victoria Nugnes, F. Quaglia, Adel Bouharoua +2 more
2023Nucleic Acids Research129 citations Open access
Semantic Scholar
MobiDB: 10 years of intrinsically disordered proteins
D. Piovesan, Alessio Del Conte, Damiano Clementel, A. Monzon +6 more
2022Nucleic Acids Res.125 citations Open access
Semantic Scholar
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
T. Lazar, E. Martínez-Pérez, F. Quaglia, András Hatos +36 more
2020Nucleic Acids Research118 citations Open access
Semantic Scholar
RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures
Alessio Del Conte, Giorgia F. Camagni, Damiano Clementel, Giovanni Minervini +4 more
2024Nucleic Acids Research114 citations Open access
Semantic Scholar
Simultaneous quantification of protein order and disorder.
Pietro Sormanni, D. Piovesan, Gabriella T. Heller, Massimiliano Bonomi +12 more
2017Nature Chemical Biology113 citations Open access
Semantic Scholar
Critical assessment of protein intrinsic disorder prediction (CAID) ‐ Results of round 2
Alessio Del Conte, M. Mehdiabadi, Adel Bouhraoua, Alexander M Mozon +2 more
2023Proteins: Structure, Function, and Bioinformatics100 citations Open access
Semantic Scholar
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
Patryk Jarnot, Joanna Ziemska-Legiecka, László Dobson, M. Merski +11 more
2020Nucleic Acids Res.96 citations Open access
Semantic Scholar
MOBIDB in 2025: integrating ensemble properties and function annotations for intrinsically disordered proteins
D. Piovesan, Alessio Del Conte, M. Mehdiabadi, M. C. Aspromonte +5 more
2024Nucleic Acids Research78 citations Open access
Semantic Scholar
MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins
M. Necci, D. Piovesan, Damiano Clementel, Z. Dosztányi +1 more
2020Bioinform.73 citations Open access
Semantic Scholar
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
F. Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos +57 more
2021Nucleic Acids Res.72 citations Open access
Semantic Scholar
SODA: prediction of protein solubility from disorder and aggregation propensity
L. Paladin, D. Piovesan, S. Tosatto
2017Nucleic Acids Res.71 citations Open access
Semantic Scholar
PDBe-KB: collaboratively defining the biological context of structural data
M. Váradi, S. Anyango, David R. Armstrong, J. Berrisford +67 more
2021Nucleic Acids Res.70 citations Open access
Semantic Scholar
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins
Hamidreza Ghafouri, T. Lazar, Alessio Del Conte, Luiggi G. Tenorio Ku +46 more
2023Nucleic Acids Research69 citations Open access
Semantic Scholar
FELLS: fast estimator of latent local structure
D. Piovesan, Ian Walsh, Giovanni Minervini, S. Tosatto
2017Bioinform.68 citations Open access
Semantic Scholar
A comprehensive assessment of long intrinsic protein disorder from the DisProt database
M. Necci, D. Piovesan, Z. Dosztányi, P. Tompa +2 more
2018Bioinform.60 citations Open access
Semantic Scholar
Large‐scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe
M. Necci, D. Piovesan, S. Tosatto
2016Protein Science53 citations Open access
Semantic Scholar
RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles
Damiano Clementel, Alessio Del Conte, A. Monzon, Giorgia F. Camagni +3 more
2022Nucleic Acids Res.46 citations Open access
Semantic Scholar
VHLdb: A database of von Hippel-Lindau protein interactors and mutations
Francesco Tabaro, Giovanni Minervini, F. Sundus, F. Quaglia +3 more
2016Scientific Reports45 citations Open access
Semantic Scholar
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
Alessio Del Conte, Adel Bouhraoua, M. Mehdiabadi, Damiano Clementel +59 more
2023Nucleic Acids Res.44 citations Open access
Semantic Scholar
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures
L. Paladin, Martina Bevilacqua, Sara Errigo, D. Piovesan +19 more
2020Nucleic Acids Res.44 citations Open access
Semantic Scholar
Peer Review #1 of "Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum (v0.1)"
Wen-Di Huang, Yi-Qin He, Lei Y. Yang, Chen Lu +472 more
202142 citations Open access
Semantic Scholar
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures
L. Paladin, L. Hirsh, D. Piovesan, Miguel Andrade +2 more
2016Nucleic Acids Res.37 citations Open access
Semantic Scholar
INGA 2.0: improving protein function prediction for the dark proteome
D. Piovesan, S. Tosatto
2019Nucleic Acids Res.32 citations Open access
Semantic Scholar
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
M. Váradi, S. Nair, I. Sillitoe, G. Tauriello +28 more
2022bioRxiv31 citations Open access
Semantic Scholar
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics
Alessio Del Conte, A. Monzon, Damiano Clementel, Giorgia F. Camagni +3 more
2023Bioinform.30 citations Open access
Semantic Scholar
Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
A. Monzon, M. Necci, F. Quaglia, Ian Walsh +3 more
2020bioRxiv30 citations Open access
Semantic Scholar
MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins.
M. Necci, D. Piovesan, Z. Dosztányi, S. Tosatto
2017Bioinformatics30 citations Open access
Semantic Scholar
The Feature-Viewer: a visualization tool for positional annotations on a sequence
L. Paladin, Mathieu Schaeffer, P. Gaudet, Monique Zahn-Zabal +4 more
2020Bioinform.29 citations Open access
Semantic Scholar
Critical Assessment of Protein Intrinsic Disorder Round 3 ‐ Predicting Disorder in the Era of Protein Language Models
M. Mehdiabadi, Alessio Del Conte, María Victoria Nugnes, M. C. Aspromonte +2 more
2025Proteins: Structure, Function, and Bioinformatics25 citations Open access
Semantic Scholar
DisProt in 2026: enhancing intrinsically disordered proteins accessibility, deposition, and annotation
María Victoria Nugnes, Kamel Eddine Adel Bouhraoua, Mehdi Zoubiri, R. Pancsa +26 more
2025Nucleic Acids Research23 citations Open access
Semantic Scholar
APICURON: a database to credit and acknowledge the work of biocurators
András Hatos, F. Quaglia, D. Piovesan, S. Tosatto
2021bioRxiv22 citations Open access
Semantic Scholar
RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins
L. Hirsh, L. Paladin, D. Piovesan, S. Tosatto
2018Nucleic Acids Res.22 citations Open access
Semantic Scholar
Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures
D. Piovesan, S. Tosatto
2018Bioinform.22 citations Open access
Semantic Scholar
FuzDB: a new phase in understanding fuzzy interactions
András Hatos, A. Monzon, S. Tosatto, D. Piovesan +1 more
2021Nucleic Acids Res.19 citations Open access
Semantic Scholar
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
Bálint Mészáros, András Hatos, Nicolás Palopoli, F. Quaglia +22 more
2023Nature Methods17 citations Open access
Semantic Scholar
An intrinsically disordered proteins community for ELIXIR
Norman E. Davey, M. Babu, M. Blackledge, A. Bridge +40 more
2019F1000Research17 citations Open access
Semantic Scholar

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