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Samuel Demharter · SciRah

Researcher profile · Semantic Scholar

Samuel Demharter

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Samuel Demharter — researcher profile on SciRah

h-index: 14
Works: 37
Citations: 1,314

Most-cited papers

Joint analysis of heterogeneous single-cell RNA-seq dataset collections
Nikolas Barkas, Viktor Petukhov, D. Nikolaeva, Yaroslav Lozinsky +3 more
2019Nature Methods278 citations Open access
Semantic Scholar
Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis
U. Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner +12 more
2020Nature Communications210 citations Open access
Semantic Scholar
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
Joseph W. Guarnieri, Joseph M. Dybas, Hossein Fazelinia, Man S. Kim +47 more
2023Science Translational Medicine165 citations Open access
Semantic Scholar
Tuning cytokine receptor signaling by re-orienting dimer geometry with surrogate ligands
I. Moraga, G. Wernig, S. Wilmes, V. Gryshkova +15 more
2015Cell160 citations Open access
Semantic Scholar
Tracing the origin of adult intestinal stem cells
Jordi Guiu, É. Hannezo, Shiro Yui, Samuel Demharter +15 more
2019Nature147 citations Open access
Semantic Scholar
Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations
B. Knapp, Samuel Demharter, Reyhaneh Esmaielbeiki, Charlotte M. Deane
2015Briefings Bioinform.52 citations Open access
Semantic Scholar
Identifying interactions in omics data for clinical biomarker discovery using symbolic regression
N. J. Christensen, Samuel Demharter, M. Machado, Lykke Pedersen +3 more
2022bioRxiv51 citations Open access
Semantic Scholar
Complex IV subunit isoform COX6A2 protects fast‐spiking interneurons from oxidative stress and supports their function
Berta Sanz-Morello, U. Pfisterer, Nikolaj Winther Hansen, Samuel Demharter +12 more
2020EMBO Journal29 citations Open access
Semantic Scholar
Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing
I. Adorjan, Teadora Tyler, A. Bhaduri, Samuel Demharter +11 more
2019Journal of Anatomy22 citations Open access
Semantic Scholar
Explainable machine learning identifies multi-omics signatures of muscle response to spaceflight in mice
Kevin Li, Riya Desai, Ryan T. Scott, J. Steele +7 more
2023npj Microgravity19 citations Open access
Semantic Scholar
Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
B. Knapp, Samuel Demharter, Charlotte M. Deane, P. Minary
2015Bioinform.19 citations Open access
Semantic Scholar
Wiring together large single-cell RNA-seq sample collections
Nikolas Barkas, Viktor Petukhov, D. Nikolaeva, Yaroslav Lozinsky +3 more
2018bioRxiv18 citations
Semantic Scholar
Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature
K. T. Kohler, N. Goldhammer, Samuel Demharter, U. Pfisterer +5 more
2022npj Breast Cancer17 citations Open access
Semantic Scholar
Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus stem cells in vitro
A. Huebner, Rebecca A. Gorelov, Ruslan M. Deviatiiarov, Samuel Demharter +7 more
2023Nature Cell Biology15 citations Open access
Semantic Scholar
Transcriptomics analysis reveals molecular alterations underpinning spaceflight dermatology
H. Cope, J. Elsborg, Samuel Demharter, J. McDonald +22 more
2024Communications Medicine12 citations Open access
Semantic Scholar
Multi-omic analyses of triptan-treated migraine attacks gives insight into molecular mechanisms
Lisette J. A. Kogelman, Katrine Falkenberg, Filip Ottosson, Madeleine Ernst +7 more
2023Scientific Reports12 citations Open access
Semantic Scholar
A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in patients with major depressive disorder
A. Nøhr, M. Lindow, Annika Forsingdal, Samuel Demharter +5 more
2021Neuropsychopharmacology11 citations Open access
Semantic Scholar
AbDesign: database of point mutants of antibodies with associated structures reveals poor generalization of binding predictions from machine learning models
Bartosz Janusz, Dawid Chomicz, Samuel Demharter, Marloes Arts +10 more
2025bioRxiv9 citations Open access
Semantic Scholar
Author Correction: Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis
U. Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner +12 more
2020Nature Communications9 citations Open access
Semantic Scholar
Predicting weight loss success on a new Nordic diet: an untargeted multi-platform metabolomics and machine learning approach
Kristina Pigsborg, Valdemar Stentoft-Larsen, Samuel Demharter, M. Aldubayan +7 more
2023Frontiers in Nutrition8 citations Open access
Semantic Scholar
Coordinated maintenance of H3K36/K27 methylation by histone demethylases preserves germ cell identity and immortality
Nico Zaghet, K. Madsen, Federico Rossi, Daniel Fernandez Perez +6 more
2021Cell Reports8 citations Open access
Semantic Scholar
Ten simple rules for surviving an interdisciplinary PhD
Samuel Demharter, Nicholas Pearce, K. Beattie, I. Frost +10 more
2017PLoS Comput. Biol.8 citations Open access
Semantic Scholar
Dysfunction of cortical GABAergic projection neurons as a major hallmark in a model of neuropsychiatric syndrome.
Andrea Asenjo-Martinez, Katarina Dragicevic, W. Hou, A. Ozsvar +11 more
2025Neuron7 citations
Semantic Scholar
Large-scale data mining of four billion human antibody variable regions reveals convergence between therapeutic and natural antibodies that constrains search space for biologics drug discovery
Paweł Dudzic, Dawid Chomicz, Jarosław Kończak, T. Satlawa +11 more
2024mAbs7 citations Open access
Semantic Scholar
Modeling Functional Motions of Biological Systems by Customized Natural Moves
Samuel Demharter, B. Knapp, Charlotte M. Deane, P. Minary
2016Biophysical Journal6 citations Open access
Semantic Scholar
NAStructuralDB : Structural database to facilitate computational studies of molecular modeling and recognition of proteins with special focus on antibody-antigen interactions
Dawid Chomicz, Paweł Dudzic, Sonia Wróbel, Tomasz Gawlowski +5 more
2025bioRxiv5 citations Open access
Semantic Scholar
More than a Feeling: Dermatological Changes Impacted by Spaceflight
H. Cope, J. Elsborg, Samuel Demharter, J. Mcdonald +20 more
2023Research Square5 citations Open access
Semantic Scholar
In silico structural modeling of multiple epigenetic marks on DNA
K. Krawczyk, Samuel Demharter, B. Knapp, Charlotte M. Deane +1 more
2018Bioinform.4 citations Open access
Semantic Scholar
Effects of protein interface mutations on protein quality and affinity
Jurrian K. de Kanter, Eva Smorodina, Aygul Minnegalieva, Marloes Arts +16 more
2026bioRxiv2 citations Open access
Semantic Scholar
ASD: Antigen-Specific Antibody Database
Arkadiusz Czerwiński, Paweł Dudzic, Konrad Wójtowicz, I. Jaszczyszyn +6 more
2025bioRxiv2 citations Open access
Semantic Scholar
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons
Dominik Szabó, V. Franke, Simona Bianco, M. Batiuk +14 more
2024bioRxiv2 citations Open access
Semantic Scholar
HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo
Samuel Demharter, B. Knapp, Charlotte M. Deane, P. Minary
2019Journal of Chemical Information and Modeling2 citations Open access
Semantic Scholar
NAStructuralDB : structural database to facilitate computational studies of molecular modeling and recognition of proteins with special focus on antibody–antigen interactions
Dawid Chomicz, Paweł Dudzic, Sonia Wróbel, Tomasz Gawlowski +5 more
2026mAbs0 citations Open access
Semantic Scholar
ASD: antigen-specific antibody database
Arkadiusz Czerwiński, Paweł Dudzic, Konrad Wójtowicz, I. Jaszczyszyn +6 more
2026mAbs0 citations Open access
Semantic Scholar
EpiRanha: Hunting for Epitope Similarity with a Structure- and Residue-Aware Graph Neural Network
Tygo Francissen, Miriam Babukhian, Helena Britze, Yano Wilke +3 more
2026bioRxiv0 citations Open access
Semantic Scholar
F28SINGLE-CELL ENRICHMENT ANALYSIS FOR THE IDENTIFICATION OF TRAIT-RELEVANT GENES AND BRAIN CELL TYPES IN PSYCHIATRIC DISORDERS
Diogo Marinho Almeida, Samuel Demharter, T. Werge, K. Khodosevich +1 more
2019European Neuropsychopharmacology0 citations
Semantic Scholar
Novel applications for hierarchical natural move Monte Carlo simulations: from proteins to nucleic acids
Samuel Demharter
20160 citations
Semantic Scholar

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Charlotte M. Deane

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