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J. Elf · SciRah

Researcher profile · Semantic Scholar

J. Elf

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J. Elf — researcher profile on SciRah

h-index: 43
Works: 164
Citations: 9,666

Most-cited papers

BIOPHYSICS: Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes
F. Balzarotti, Yvan Eilers, K. Gwosch, Arvid H. Gynnå +4 more
20171,093 citations Open access
Semantic Scholar
Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging
O. Baltekin, Alexis Boucharin, E. Tano, D. Andersson +1 more
2017Proceedings of the National Academy of Sciences of the United States of America397 citations Open access
Semantic Scholar
Oufti: An integrated software package for high-accuracy, high-throughput quantitative microscopy analysis
Ahmad Paintdakhi, Bradley R. Parry, M. Campos, Irnov Irnov +3 more
2015Molecular Microbiology381 citations Open access
Semantic Scholar
The Synchronization of Replication and Division Cycles in Individual E. coli Cells.
M. Walldén, D. Fange, E. G. Lundius, O. Baltekin +1 more
2016Cell315 citations Open access
Semantic Scholar
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid
Arash Sanamrad, F. Persson, E. G. Lundius, D. Fange +2 more
2014Proceedings of the National Academy of Sciences of the United States of America175 citations Open access
Semantic Scholar
Kinetics of dCas9 target search in Escherichia coli
Daniel L. Jones, P. Leroy, Cecilia Unoson, D. Fange +3 more
2017Science171 citations Open access
Semantic Scholar
Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation
P. Hammar, M. Walldén, D. Fange, F. Persson +4 more
2014Nature Genetics140 citations Open access
Semantic Scholar
Single-Molecule Kinetics in Living Cells.
J. Elf, Irmeli Barkefors
2018Annual Review of Biochemistry100 citations Open access
Semantic Scholar
Rapid antibiotic susceptibility testing and species identification for mixed samples
Vinodh Kandavalli, Praneeth Karempudi, Jimmy Larsson, J. Elf
2022Nature Communications81 citations Open access
Semantic Scholar
The highly dynamic nature of bacterial heteroresistance impairs its clinical detection
Cátia Pereira, Jimmy Larsson, K. Hjort, J. Elf +1 more
2021Communications Biology80 citations Open access
Semantic Scholar
RecA finds homologous DNA by reduced dimensionality search
Jakub Wiktor, Arvid H. Gynnå, P. Leroy, Jimmy Larsson +3 more
2021Nature80 citations Open access
Semantic Scholar
Time-resolved imaging-based CRISPRi screening
Daniel Camsund, M. Lawson, Jimmy Larsson, Daniel L. Jones +3 more
2019Nature Methods79 citations Open access
Semantic Scholar
In situ genotyping of a pooled strain library after characterizing complex phenotypes
M. Lawson, Daniel Camsund, Jimmy Larsson, O. Baltekin +2 more
2017bioRxiv72 citations Open access
Semantic Scholar
DNA surface exploration and operator bypassing during target search
E. Marklund, B. Van Oosten, Guan-Zhong Mao, E. Amselem +10 more
2020Nature60 citations Open access
Semantic Scholar
Sequence specificity in DNA binding is mainly governed by association
E. Marklund, Guan-Zhong Mao, Jin-Qiao Yuan, S. Zikrin +3 more
2022Science54 citations Open access
Semantic Scholar
Pointwise error estimates in localization microscopy
M. Lindén, V. Curic, E. Amselem, J. Elf
2016Nature Communications52 citations Open access
Semantic Scholar
What matters for lac repressor search in vivo—sliding, hopping, intersegment transfer, crowding on DNA or recognition?
A. Mahmutovic, O. Berg, J. Elf
2015Nucleic Acids Research49 citations Open access
Semantic Scholar
tRNA tracking for direct measurements of protein synthesis kinetics in live cells
Ivan L. Volkov, M. Lindén, J. A. Rivera, Ka-Weng Ieong +3 more
2018Nature Chemical Biology45 citations Open access
Semantic Scholar
Antibiotic perseverance increases the risk of resistance development
G. Brandis, Jimmy Larsson, J. Elf
2022bioRxiv44 citations Open access
Semantic Scholar
Contact‐dependent growth inhibition induces high levels of antibiotic‐tolerant persister cells in clonal bacterial populations
Anirban Ghosh, O. Baltekin, Marcus Wäneskog, Dina Elkhalifa +3 more
2018EMBO Journal40 citations Open access
Semantic Scholar
Transcription factor binding kinetics constrain noise suppression via negative feedback
Andreas Grönlund, P. Lötstedt, J. Elf
2013Nature Communications40 citations Open access
Semantic Scholar
Direct measurements of mRNA translation kinetics in living cells
M. Metelev, Erik Lundin, Ivan L. Volkov, Arvid H. Gynnå +2 more
2020Nature Communications37 citations Open access
Semantic Scholar
Single molecule methods with applications in living cells.
F. Persson, Irmeli Barkefors, J. Elf
2013Current Opinion in Biotechnology37 citations
Semantic Scholar
Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle
Anna Knöppel, Oscar Broström, K. Gras, J. Elf +1 more
2023Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Segmentation and Track-Analysis in Time-Lapse Imaging of Bacteria
Sajith Kecheril Sadanandan, O. Baltekin, Klas E. G. Magnusson, Alexis Boucharin +4 more
2016IEEE Journal on Selected Topics in Signal Processing34 citations
Semantic Scholar
Renal sympathetic denervation in Sweden: a report from the Swedish registry for renal denervation
S. Völz, J. Spaak, J. Elf, Christina Jägrén +6 more
2018Journal of Hypertension32 citations
Semantic Scholar
Simulated single molecule microscopy with SMeagol
M. Lindén, V. Curic, Alexis Boucharin, D. Fange +1 more
2015Bioinform.32 citations Open access
Semantic Scholar
Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli.
Kalle Kipper, E. G. Lundius, V. Curic, Ivana Nikić +3 more
2017ACS Synthetic Biology30 citations Open access
Semantic Scholar
Variational algorithms for analyzing noisy multi-state diffusion trajectories
M. Lindén, J. Elf
2018bioRxiv29 citations Open access
Semantic Scholar
Bursting onto the scene? Exploring stochastic mRNA production in bacteria.
Daniel L. Jones, J. Elf
2018Current Opinion in Microbiology28 citations
Semantic Scholar
Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition.
Qinghua Liao, M. Lüking, Dennis M. Krüger, S. Deindl +3 more
2018Journal of Physical Chemistry B27 citations Open access
Semantic Scholar
Rotational and Translational Diffusion of Proteins as a Function of Concentration
Zahedeh Bashardanesh, J. Elf, H. Zhang, D. van der Spoel
2019ACS Omega25 citations Open access
Semantic Scholar
Culture-free detection of bacteria from blood for rapid sepsis diagnosis
M. H. M. Miguélez, Mohammad Osaid, Erik Hallström, Kerem Kaya +5 more
2025npj Digital Medicine20 citations Open access
Semantic Scholar
Imaging-based screens of pool-synthesized cell libraries
M. Lawson, J. Elf
2021Nature Methods20 citations
Semantic Scholar
Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy
Erik Hallström, Vinodh Kandavalli, Petter Ranefall, J. Elf +1 more
2023bioRxiv18 citations Open access
Semantic Scholar
The effects of baroreflex activation therapy on blood pressure and sympathetic function in patients with refractory hypertension: the rationale and design of the Nordic BAT study*
D. Gordin, F. E. F. Fadl Elmula, B. Andersson, A. Gottsäter +9 more
2017Blood Pressure16 citations Open access
Semantic Scholar
Phenotypic drug susceptibility testing for Mycobacterium tuberculosis variant bovis BCG in 12 hours
Buu Minh Tran, Jimmy Larsson, Anastasia Grip, Praneeth Karempudi +1 more
2025Nature Communications15 citations Open access
Semantic Scholar
Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization
E. Amselem, Bo Broadwater, Tora Hävermark, Magnus Johansson +1 more
2022bioRxiv14 citations Open access
Semantic Scholar
Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI
Kalle Kipper, N. Eremina, E. Marklund, Sumera Tubasum +4 more
2018PLoS ONE13 citations Open access
Semantic Scholar
Conformational Change of Transcription Factors from Search to Specific Binding: A lac Repressor Case Study
M. Lüking, J. Elf, Y. Levy
2022Journal of Physical Chemistry B12 citations Open access
Semantic Scholar
The Escherichia coli chromosome moves to the replisome
K. Gras, D. Fange, J. Elf
2023bioRxiv10 citations Open access
Semantic Scholar
Pooled optical screening in bacteria using chromosomally expressed barcodes
R. Soares, Daniela A. García-Soriano, Jimmy Larsson, D. Fange +9 more
2023bioRxiv9 citations Open access
Semantic Scholar
Mechanism of DNA surface exploration and operator bypassing during target search
E. Marklund, B. Van Oosten, Guan-Zhong Mao, E. Amselem +10 more
2020bioRxiv8 citations Open access
Semantic Scholar
The lac Repressor Displays Facilitated Diffusion in Living Cells
P. Hammar, P. Leroy, A. Mahmutovic, E. Marklund +2 more
20158 citations
Semantic Scholar
How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems?
J. Doudna, R. Bar-Ziv, J. Elf, V. Noireaux +5 more
2017Cell Systems7 citations Open access
Semantic Scholar
Fast Antibiotic Susceptibility Testing based on single cell growth rate measurements
O. Baltekin, Alexis Boucharin, E. Tano, D. Andersson +1 more
2017bioRxiv6 citations Open access
Semantic Scholar
The helical structure of DNA facilitates binding
O. Berg, A. Mahmutovic, E. Marklund, J. Elf
20166 citations
Semantic Scholar
One Step Towards Creating Value From Big Data - A Case Study on E.ON Elnät
K. Andersson, J. Elf
20156 citations
Semantic Scholar
Fluctuations in growth rates determine the generation time and size distributions of E. coli cells
M. Walldén, D. Fange, O. Baltekin, J. Elf
20156 citations
Semantic Scholar

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