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A. Wagner · SciRah

Researcher profile · Semantic Scholar

A. Wagner

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A. Wagner — researcher profile on SciRah

h-index: 26
Works: 121
Citations: 5,826

Most-cited papers

Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts
Sharon L. Freshour, Susanna Kiwala, Kelsy C. Cotto, Adam C. Coffman +5 more
2020bioRxiv911 citations Open access
Semantic Scholar
DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms
M. Cannon, James Stevenson, Kathryn Stahl, Rohit Basu +10 more
2023Nucleic Acids Research471 citations Open access
Semantic Scholar
GA4GH: International policies and standards for data sharing across genomic research and healthcare
H. Rehm, A. Page, Lindsay D. Smith, Jeremy B. Adams +198 more
2021Cell Genomics306 citations Open access
Semantic Scholar
Standards for the Classification of Pathogenicity of Somatic Variants in Cancer (Oncogenicity): Joint Recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)
P. Horák, M. Griffith, Arpad M. Danos, B. Pitel +43 more
2022Genetics in Medicine231 citations Open access
Semantic Scholar
Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer
A. Wagner, S. Devarakonda, Zachary L. Skidmore, K. Krysiak +26 more
2018Nature Communications158 citations Open access
Semantic Scholar
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
A. Wagner, B. Walsh, Georgia Mayfield, D. Tamborero +35 more
2020Nature Genetics142 citations Open access
Semantic Scholar
A Simple Standard for Sharing Ontological Mappings (SSSOM)
N. Matentzoglu, J. Balhoff, S. Bello, C. Bizon +40 more
2021Database J. Biol. Databases Curation122 citations Open access
Semantic Scholar
The GA4GH Phenopacket schema defines a computable representation of clinical data
Julius O. B. Jacobsen, M. Baudis, Gareth S. Baynam, J. Beckmann +63 more
2022Nature Biotechnology97 citations Open access
Semantic Scholar
Genomic architecture of FGFR2 fusions in cholangiocarcinoma and its implication for molecular testing
O. Neumann, T. Burn, M. Allgäuer, M. Ball +18 more
2022British Journal of Cancer78 citations Open access
Semantic Scholar
Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
Erica K. Barnell, Peter Ronning, Katie M. Campbell, K. Krysiak +20 more
2018Genetics in Medicine76 citations Open access
Semantic Scholar
Artificial Intelligence and Pathology: from Principles to Practice and Future Applications in Histomorphology and Molecular Profiling.
A. Stenzinger, M. Alber, M. Allgäuer, Philipp Jurmeister +11 more
2021Seminars in Cancer Biology74 citations Open access
Semantic Scholar
A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data
Benjamin J. Ainscough, Erica K. Barnell, Peter Ronning, Katie M. Campbell +10 more
2018Nature Genetics69 citations Open access
Semantic Scholar
The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification
A. Wagner, L. Babb, G. Alterovitz, M. Baudis +24 more
2021Cell Genomics52 citations Open access
Semantic Scholar
FHIR Genomics: enabling standardization for precision medicine use cases
G. Alterovitz, Bret S. E. Heale, James Jones, David A. Kreda +8 more
2020npj Genomic Medicine41 citations Open access
Semantic Scholar
CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase
K. Krysiak, Arpad M. Danos, J. Saliba, Joshua F. McMichael +61 more
2022Nucleic Acids Res.40 citations Open access
Semantic Scholar
Collaborative, Multidisciplinary Evaluation of Cancer Variants Through Virtual Molecular Tumor Boards Informs Local Clinical Practices
Shruti Rao, B. Pitel, A. Wagner, S. Boca +11 more
2020JCO Clinical Cancer Informatics27 citations Open access
Semantic Scholar
Standard operating procedure for curation and clinical interpretation of variants in cancer
Arpad M. Danos, K. Krysiak, Erica K. Barnell, Adam C. Coffman +19 more
2019Genome Medicine25 citations Open access
Semantic Scholar
A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants
A. Wagner, B. Walsh, Georgia Mayfield, D. Tamborero +33 more
2018bioRxiv24 citations Open access
Semantic Scholar
Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).
P. Horák, M. Griffith, Arpad M. Danos, B. Pitel +43 more
2022Genetics in Medicine23 citations Open access
Semantic Scholar
Discovery of clinically relevant fusions in pediatric cancer
Stephanie LaHaye, James R. Fitch, Kyle Voytovich, Adam C. Herman +32 more
2021BMC Genomics22 citations Open access
Semantic Scholar
GA4GH Phenopackets: A Practical Introduction
M. Ladewig, Julius O. B. Jacobsen, A. Wagner, D. Danis +15 more
2022Advanced genetics19 citations Open access
Semantic Scholar
Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards
Arpad M. Danos, D. Ritter, A. Wagner, K. Krysiak +16 more
2018Human Mutation17 citations Open access
Semantic Scholar
Phenopacket-tools: Building and validating GA4GH Phenopackets
D. Danis, Julius O. B. Jacobsen, A. Wagner, T. Groza +14 more
2023PLoS ONE13 citations Open access
Semantic Scholar
The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine
Julius O. B. Jacobsen, M. Baudis, Gareth S. Baynam, J. Beckmann +43 more
2021medRxiv13 citations Open access
Semantic Scholar
A community approach to the cancer variant interpretation bottleneck
K. Krysiak, Arpad M. Danos, Susanna Kiwala, Joshua F. McMichael +48 more
2022Nature Cancer12 citations Open access
Semantic Scholar
CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase
A. Wagner, Susanna Kiwala, Adam C. Coffman, Joshua F. McMichael +8 more
2019bioRxiv12 citations Open access
Semantic Scholar
Mapping MAVE data for use in human genomics applications
J. Arbesfeld, Estelle Y. Da, James Stevenson, K. Kuzma +15 more
2024bioRxiv8 citations Open access
Semantic Scholar
The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation and Federated Identification of Molecular Variation
A. Wagner, L. Babb, G. Alterovitz, M. Baudis +23 more
2021bioRxiv7 citations Open access
Semantic Scholar
Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect
M. Claussnitzer, V. Parikh, A. Wagner, J. Arbesfeld +10 more
2023arXiv.org6 citations
Semantic Scholar
Standard operating procedure for somatic variant refinement of tumor sequencing data
Erica K. Barnell, Peter Ronning, Katie M. Campbell, K. Krysiak +10 more
2018bioRxiv5 citations Open access
Semantic Scholar
Normalization of drug and therapeutic concepts with Thera-Py
M. Cannon, James Stevenson, K. Kuzma, Susanna Kiwala +4 more
2023JAMIA Open4 citations Open access
Semantic Scholar
Development and application of a computable genotype model in the GA4GH Variation Representation Specification
W. Goar, L. Babb, S. Chamala, Melissa S. Cline +12 more
2022bioRxiv4 citations Open access
Semantic Scholar
Accessing clinical-grade genomic classification data through the ClinGen Data Platform
Karen P. Dalton, H. Rehm, Matt W. Wright, Mark E. Mandell +5 more
2022Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing4 citations Open access
Semantic Scholar
Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR‐formatted genomic variants
R. Dolin, Bret S. E. Heale, Rohan Gupta, Carla Alvarez +8 more
2023Learning Health Systems3 citations Open access
Semantic Scholar
Recommendations for future extensions to the HGNC gene fusion nomenclature
A. Wagner, Yassmine M. N. Akkari, Marilyn M. Li, A. Roy +2 more
2021Leukemia2 citations Open access
Semantic Scholar
35. Evolution of a variant curation procedures in the open-access cancer variant interpretation knowledgebase CIViC
K. Krysiak, Arpad M. Danos, J. Saliba, Susanna Kiwala +7 more
2023Cancer Genetics1 citations
Semantic Scholar
16. Enhancement of pediatric cancer curation and representation through expert-guided data mining and ontology refinement
J. Saliba, Jake Lever, K. Krysiak, Lana M. Sheta +19 more
2022Cancer Genetics1 citations
Semantic Scholar
Abstract 1193: Enhancing pediatric cancer variant curation and representation through standardized classification and automation
J. Saliba, Jake Lever, K. Krysiak, Arpad M. Danos +17 more
2022Cancer Research1 citations
Semantic Scholar
The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer
Arpad M. Danos, K. Krysiak, Erica K. Barnell, Adam C. Coffman +17 more
2019bioRxiv1 citations Open access
Semantic Scholar
27. Development of standards for the assessment of gene fusion oncogenicity
Karen Tsuchiya, W. Goar, Yassmine M. N. Akkari, Julia A Bridge +10 more
2025Cancer Genetics0 citations
Semantic Scholar
50. Updates to the CIViC knowledgebase: The fusion feature type
Arpad M. Danos, K. Krysiak, Saliba Jason, Adam C. Coffman +9 more
2025Cancer Genetics0 citations
Semantic Scholar
80. Integrating expert knowledge for somatic variant interpretation: Achievements and future directions of ClinGen somatic
J. Saliba, Arpad M. Danos, K. Krysiak, Adam C. Coffman +24 more
2025Cancer Genetics0 citations Open access
Semantic Scholar
31. A cross-consortia initiative for aligning the definitions and descriptions of gene fusions
A. Wagner, Reece K. Hart, J. D. Den Dunnen, Elspeth A Bruford +5 more
2024Cancer Genetics0 citations
Semantic Scholar
28. Addition of non-gene features to the CIViC data model
Arpad M. Danos, K. Krysiak, Adam C. Coffman, Joshua F. McMichael +5 more
2024Cancer Genetics0 citations
Semantic Scholar
68. ClinGen Cancer Variant Interpretation (CVI): Updates and recommendations on the ClinGen/CGC/VICC Oncogenicity SOP
Deborah Ritter, D. Sonkin, M. Griffith, O. Griffith +10 more
2024Cancer Genetics0 citations
Semantic Scholar
54. Creation of a knowledgebase of high-quality assertions of the clinical actionability of somatic variants in cancer
J. Saliba, Arpad M. Danos, K. Krysiak, Adam C. Coffman +24 more
2024Cancer Genetics0 citations
Semantic Scholar
Normalization of Drug and Therapeutic Concepts with TheraPy
M. Cannon, James Stevenson, K. Kuzma, Susanna Kiwala +4 more
2023medRxiv0 citations Open access
Semantic Scholar
26. Improving interoperability of therapeutics and their targets for clinical and precision medicine applications
M. Cannon, James Stevenson, Kathryn Stahl, Adam C. Coffman +6 more
2023Cancer Genetics0 citations
Semantic Scholar
58. Implementing the ClinGen/CGC/VICC oncogenicity guidelines in a pediatric variant classification workflow
W. Goar, K. Kuzma, Kathryn Stahl, Kyle Voytovich +20 more
2023Cancer Genetics0 citations
Semantic Scholar
Abstract 6569: ClinGen Somatic and CIViC collaborate to comprehensively evaluate somatic variants in cancer
J. Saliba, Arpad M. Danos, K. Krysiak, Adam C. Coffman +18 more
2023Cancer Research0 citations
Semantic Scholar

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