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G. Gonnet · SciRah

Researcher profile · Semantic Scholar

G. Gonnet

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G. Gonnet — researcher profile on SciRah

h-index: 48
Works: 206
Citations: 15K

Most-cited papers

On the LambertW function
Robert M Corless, G. Gonnet, D. E. G. Hare, D. Jeffrey +1 more
1996Advances in Computational Mathematics3,965 citations
Semantic Scholar
A role for codon order in translation dynamics.
Gina M. Cannarozzi, Nicol N. Schraudolph, M. Faty, P. von Rohr +5 more
2010Cell368 citations Open access
Semantic Scholar
A mechanism for asymmetric segregation of age during yeast budding
Zhanna Shcheprova, Sandro Baldi, S. Frei, G. Gonnet +1 more
2008Nature346 citations
Semantic Scholar
OMA 2011: orthology inference among 1000 complete genomes
A. Altenhoff, Adrian Schneider, G. Gonnet, C. Dessimoz
2010Nucleic Acids Res.227 citations Open access
Semantic Scholar
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
A. Altenhoff, N. Glover, Clément-Marie Train, Klara Kaleb +9 more
2017Nucleic Acids Res.215 citations Open access
Semantic Scholar
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
A. Altenhoff, N. Skunca, N. Glover, Clément-Marie Train +8 more
2014Nucleic Acids Res.215 citations Open access
Semantic Scholar
Amino acid substitution during functionally constrained divergent evolution of protein sequences.
S. Benner, M. A. Cohen, G. Gonnet
1994Protein Engineering169 citations Open access
Semantic Scholar
Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
P. Fresia, Verónica Antelo, Cecilia Salazar, M. Giménez +5 more
2019Microbiome155 citations Open access
Semantic Scholar
Fast text searching for regular expressions or automaton searching on tries
Ricardo Baeza-Yates, G. Gonnet
1996JACM155 citations Open access
Semantic Scholar
Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
A. Altenhoff, M. Gil, G. Gonnet, C. Dessimoz
2013PLoS ONE153 citations Open access
Semantic Scholar
ALF—A Simulation Framework for Genome Evolution
D. Dalquen, M. Anisimova, G. Gonnet, C. Dessimoz
2011Molecular biology and evolution153 citations Open access
Semantic Scholar
OMA Browser - Exploring orthologous relations across 352 complete genomes
Adrian Schneider, C. Dessimoz, G. Gonnet
2007Bioinform.132 citations Open access
Semantic Scholar
Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
Adrian Schneider, A. Souvorov, N. Sabath, Giddy Landan +2 more
2009Genome Biology and Evolution130 citations Open access
Semantic Scholar
Darwin v. 2.0: an interpreted computer language for the biosciences
G. Gonnet, M. Hallett, C. Korostensky, Laurent Bernardin
2000Bioinform.111 citations Open access
Semantic Scholar
Scientific Computation: Contents
G. Gonnet, Ralf Scholl
2009106 citations
Semantic Scholar
Using traveling salesman problem algorithms for evolutionary tree construction
C. Korostensky, G. Gonnet
2000Bioinform.100 citations Open access
Semantic Scholar
Empirical codon substitution matrix
Adrian Schneider, Gina M. Cannarozzi, G. Gonnet
2005BMC Bioinformatics94 citations Open access
Semantic Scholar
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
Clément-Marie Train, N. Glover, G. Gonnet, A. Altenhoff +1 more
2017Bioinform.86 citations Open access
Semantic Scholar
A Phylogenomic Study of Human, Dog, and Mouse
Gina M. Cannarozzi, Adrian Schneider, G. Gonnet
2006PLoS Comput. Biol.81 citations Open access
Semantic Scholar
OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements
C. Dessimoz, Gina M. Cannarozzi, M. Gil, Daniel Margadant +3 more
2005Comparative Genomics80 citations
Semantic Scholar
An analysis of simultaneous variation in protein structures.
Gareth Chelvanayagam, A. Eggenschwiler, L. Knecht, G. Gonnet +1 more
1997Protein Engineering69 citations Open access
Semantic Scholar
Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits
C. Dessimoz, B. Boeckmann, Alexander C. J. Roth, G. Gonnet
2006Nucleic Acids Research68 citations Open access
Semantic Scholar
LATIN 2000: Theoretical Informatics: 4th Latin American Symposium, Punta del Este, Uruguay, April 10-14, 2000 Proceedings
G. Gonnet, D. Panario, Alfredo Viola
2000Lecture Notes in Computer Science66 citations Open access
Semantic Scholar
Evaluation Measures of Multiple Sequence Alignments
G. Gonnet, C. Korostensky, S. Benner
2000J. Comput. Biol.56 citations
Semantic Scholar
Analysis of amino acid substitution during divergent evolution: the 400 by 400 dipeptide substitution matrix.
G. Gonnet, M. Cohen, S. Benner
1994Biochemical and Biophysical Research Communications - BBRC49 citations
Semantic Scholar
The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study
D. Dalquen, A. Altenhoff, G. Gonnet, C. Dessimoz
2013PLoS ONE48 citations Open access
Semantic Scholar
An analysis of the helix‐to‐strand transition between peptides with identical sequence
Xiang-Hong Zhou, F. Alber, G. Folkers, G. Gonnet +1 more
2000Proteins: Structure, Function, and Bioinformatics47 citations
Semantic Scholar
Fast String Matching with Mismatches
Ricardo Baeza-Yates, G. Gonnet
1994Information and Computation44 citations Open access
Semantic Scholar
Limitations of codon adaptation index and other coding DNA‐based features for prediction of protein expression in Saccharomyces cerevisiae
Markus T. Friberg, P. von Rohr, G. Gonnet
2004Yeast40 citations
Semantic Scholar
An algorithmic and complexity analysis of interpolation search
G. Gonnet, Lawrence D. Rogers, J. A. George
2004Acta Informatica39 citations
Semantic Scholar
A fast algorithm on average for all-against-all sequence matching
Ricardo Baeza-Yates, G. Gonnet
19996th International Symposium on String Processing and Information Retrieval. 5th International Workshop on Groupware (Cat. No.PR00268)38 citations
Semantic Scholar
Differential Equations: An Introduction with Mathematica®
Shepley L. Ross, J. Ewing, S. Wagon, J. Marsden +2 more
199535 citations
Semantic Scholar
DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework
C. Dessimoz, Daniel Margadant, G. Gonnet
2008Annual International Conference on Research in Computational Molecular Biology28 citations
Semantic Scholar
A predicted consensus structure for the N‐Terminal fragment of the heat shock protein HSP90 family
Dietlind L. Gerloff, F. Cohen, C. Korostensky, Marcel Turcotte +2 more
1997Proteins: Structure, Function, and Bioinformatics27 citations
Semantic Scholar
Scoring functions for transcription factor binding site prediction
Markus T. Friberg, P. von Rohr, G. Gonnet
2005BMC Bioinformatics26 citations Open access
Semantic Scholar
Probabilistic Ancestral Sequences and Multiple Alignments
G. Gonnet, S. Benner
1996Scandinavian Workshop on Algorithm Theory25 citations
Semantic Scholar
Near optimal multiple sequence alignments using a traveling salesman problem approach
C. Korostensky, G. Gonnet
19996th International Symposium on String Processing and Information Retrieval. 5th International Workshop on Groupware (Cat. No.PR00268)21 citations
Semantic Scholar
Probing protein function using a combination of gene knockout and proteome analysis by mass spectrometry
P. Dainese, W. Staudenmann, M. Quadroni, C. Korostensky +3 more
1997Electrophoresis21 citations
Semantic Scholar
Correction: Algorithm of OMA for large-scale orthology inference
Alexander C. J. Roth, G. Gonnet, C. Dessimoz
200919 citations
Semantic Scholar
Surprising results on phylogenetic tree building methods based on molecular sequences
G. Gonnet
2012BMC Bioinformatics16 citations Open access
Semantic Scholar
A combinatorial distance-constraint approach to predicting protein tertiary models from known secondary structure.
Gareth Chelvanayagam, L. Knecht, T. Jenny, S. Benner +1 more
1998Folding & design15 citations Open access
Semantic Scholar
SynPAM—A Distance Measure Based on Synonymous Codon Substitutions
Adrian Schneider, G. Gonnet, Gina M. Cannarozzi
2007IEEE/ACM Transactions on Computational Biology & Bioinformatics14 citations
Semantic Scholar
Text dominated databases, theory practice and experience (abstract)
G. Gonnet
1994ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems13 citations
Semantic Scholar
Cell fingerprinting: An approach to classifying cells according to mass profiles of digests of protein extracts
Xiang-Hong Zhou, G. Gonnet, Michael D. Hallett, Martin Münchbach +2 more
2001Proteomics11 citations
Semantic Scholar
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
C. Dessimoz, M. Gil, Adrian Schneider, G. Gonnet
2006BMC Bioinformatics10 citations Open access
Semantic Scholar
Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms
Markus T. Friberg, P. Gonnet, Yves Barral, Nicol N. Schraudolph +1 more
2006Workshop on Algorithms in Bioinformatics10 citations Open access
Semantic Scholar
Some string matching problems from Bioinformatics which still need better solutions
G. Gonnet
2004J. Discrete Algorithms10 citations Open access
Semantic Scholar
An algorithm for the identification of proteins using peptides with ragged N‐ or C‐termini generated by sequential endo‐ and exopeptidase digestions
C. Korostensky, W. Staudenmann, P. Dainese, S. Hoving +2 more
1998Electrophoresis9 citations Open access
Semantic Scholar
Automatic problem-specific hyperparameter optimization and model selection for supervised machine learning
RÃ³ger BermÃºdez-ChacÃ³n, G. Gonnet, Kevin Smith
20158 citations
Semantic Scholar
Synonymous Codon Substitution Matrices
Adrian Schneider, G. Gonnet, Gina M. Cannarozzi
2006International Conference on Conceptual Structures5 citations
Semantic Scholar

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