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Daniel Muller · SciRah

Researcher profile · Semantic Scholar

Daniel Muller

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Daniel Muller — researcher profile on SciRah

h-index: 28
Works: 52
Citations: 3,943

Most-cited papers

Plant growth-promoting rhizobacteria and root system functioning
Jordan Vacheron, Guilhem Desbrosses, M. Bouffaud, B. Touraine +5 more
2013Frontiers in Plant Science1,392 citations Open access
Semantic Scholar
Let the Core Microbiota Be Functional.
P. Lemanceau, M. Blouin, Daniel Muller, Y. Moënne-Loccoz
2017Trends in Plant Science393 citations Open access
Semantic Scholar
Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria
Maxime Bruto, C. Prigent-Combaret, Daniel Muller, Y. Moënne-Loccoz
2014Scientific Reports275 citations Open access
Semantic Scholar
Root microbiome relates to plant host evolution in maize and other Poaceae.
M. Bouffaud, M. Poirier, Daniel Muller, Y. Moënne-Loccoz
2014Environmental Microbiology225 citations
Semantic Scholar
Is diversification history of maize influencing selection of soil bacteria by roots?
M. Bouffaud, M. Kyselková, B. Gouesnard, G. Grundmann +2 more
2012Molecular Ecology125 citations
Semantic Scholar
Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens
Florent Lassalle, Tony Campillo, L. Vial, Jessica Baude +11 more
2011Genome Biology and Evolution115 citations Open access
Semantic Scholar
Comparative Genomics of Environmental and Clinical Stenotrophomonas maltophilia Strains with Different Antibiotic Resistance Profiles
Benjamin Youenou, S. Favre-Bonté, J. Bodilis, E. Brothier +3 more
2015Genome Biology and Evolution105 citations Open access
Semantic Scholar
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26
J. Andres, F. Arsène-Ploetze, V. Barbe, C. Brochier-Armanet +19 more
2013Genome Biology and Evolution72 citations Open access
Semantic Scholar
Distribution of 2,4-Diacetylphloroglucinol Biosynthetic Genes among the Pseudomonas spp. Reveals Unexpected Polyphyletism
Juliana Almario, Maxime Bruto, Jordan Vacheron, C. Prigent-Combaret +2 more
2017Frontiers in Microbiology71 citations Open access
Semantic Scholar
1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species
M. Bouffaud, Sébastien Renoud, A. Dubost, Y. Moënne-Loccoz +1 more
2018Microbiome65 citations Open access
Semantic Scholar
Secondary metabolites from plant‐associated Pseudomonas are overproduced in biofilm
L. Rieusset, Marjolaine Rey, Daniel Muller, Jordan Vacheron +4 more
2020Microbial Biotechnology61 citations Open access
Semantic Scholar
Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco.
Juliana Almario, Daniel Muller, G. Défago, Y. Moënne-Loccoz
2014Environmental Microbiology56 citations
Semantic Scholar
Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere
Jordan Vacheron, Y. Moënne-Loccoz, A. Dubost, Maximilien Gonçalves-Martins +2 more
2016Frontiers in Plant Science54 citations Open access
Semantic Scholar
Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings
O. Couillerot, M. Bouffaud, E. Baudoin, Daniel Muller +2 more
201054 citations
Semantic Scholar
Impact of Currently Marketed Tampons and Menstrual Cups on Staphylococcus aureus Growth and Toxic Shock Syndrome Toxin 1 Production In Vitro
Louis Nonfoux, Myriam Chiaruzzi, C. Badiou, Jessica Baude +5 more
2018Applied and Environmental Microbiology53 citations Open access
Semantic Scholar
Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils
Juliana Almario, Y. Moënne-Loccoz, Daniel Muller
201353 citations
Semantic Scholar
Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid.
M. Ramírez-Bahena, L. Vial, Florent Lassalle, Benjamin Diel +4 more
2014Molecular Phylogenetics and Evolution50 citations
Semantic Scholar
Plant growth-promoting rhizobacteria and root system
Guilhem Desbrosses, M. Bouffaud, B. Touraine, Y. Moënne-Loccoz +4 more
201347 citations
Semantic Scholar
Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere?
M. Bouffaud, Sébastien Renoud, Y. Moënne-Loccoz, Daniel Muller
2016Scientific Reports43 citations Open access
Semantic Scholar
Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis.
Florent Lassalle, Daniel Muller, X. Nesme
2015Research in Microbiology43 citations Open access
Semantic Scholar
Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov.
Vahid Keshavarz-Tohid, Jordan Vacheron, A. Dubost, C. Prigent-Combaret +5 more
2019Systematic and Applied Microbiology40 citations Open access
Semantic Scholar
Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes
Maxime Bruto, C. Prigent-Combaret, Patricia Luis, Y. Moënne-Loccoz +1 more
2014Proceedings of the Royal Society of London. Biological Sciences40 citations Open access
Semantic Scholar
Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize
Sébastien Renoud, D. Abrouk, C. Prigent-Combaret, F. Wisniewski-Dyé +3 more
2022Microorganisms36 citations Open access
Semantic Scholar
Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum
Jordan Vacheron, Sébastien Renoud, Daniel Muller, O. Babalola +1 more
201535 citations
Semantic Scholar
Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale
S. Donn, Juliana Almario, Daniel Muller, Y. Moënne-Loccoz +3 more
201435 citations
Semantic Scholar
Differential Contribution of Plant-Beneficial Functions from Pseudomonas kilonensis F113 to Root System Architecture Alterations in Arabidopsis thaliana and Zea mays.
Jordan Vacheron, Guilhem Desbrosses, Sébastien Renoud, R. Padilla +3 more
2018Molecular Plant-Microbe Interactions33 citations Open access
Semantic Scholar
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Florent Lassalle, Rémi Planel, S. Penel, D. Chapulliot +11 more
2016bioRxiv33 citations Open access
Semantic Scholar
Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities
Beatriz Manriquez, Daniel Muller, C. Prigent-Combaret
2021Frontiers in Microbiology31 citations Open access
Semantic Scholar
A metagenomic lens into endosphere microbial communities, promises, and discoveries.
B. Adeleke, Daniel Muller, O. Babalola
2023Letters in Applied Microbiology27 citations Open access
Semantic Scholar
Effect of clay mineralogy on iron bioavailability and rhizosphere transcription of 2,4-diacetylphloroglucinol biosynthetic genes in biocontrol Pseudomonas protegens.
Juliana Almario, C. Prigent-Combaret, Daniel Muller, Y. Moënne-Loccoz
2013Molecular Plant-Microbe Interactions26 citations
Semantic Scholar
Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113
Jordan Vacheron, Emeline Combes-Meynet, V. Walker, B. Gouesnard +3 more
2016Plant and Soil24 citations
Semantic Scholar
Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France)
Juliana Almario, M. Kyselková, J. Kopecký, M. Ságová-Marečková +3 more
2013Plant and Soil24 citations
Semantic Scholar
Complex ecological interactions of Staphylococcus aureus in tampons during menstruation
Isaline Jacquemond, A. Muggeo, G. Lamblin, A. Tristan +14 more
2018Scientific Reports23 citations Open access
Semantic Scholar
Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani.
Vahid Keshavarz-Tohid, P. Taheri, Daniel Muller, C. Prigent-Combaret +4 more
2017Research in Microbiology22 citations Open access
Semantic Scholar
Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model strains.
V. Walker, Maxime Bruto, F. Bellvert, R. Bally +4 more
2013Molecular Plant-Microbe Interactions21 citations Open access
Semantic Scholar
Rapid and Efficient Methods to Isolate, Type Strains and Determine Species of Agrobacterium spp. in Pure Culture and Complex Environments
M. Shams, Tony Campillo, C. Lavire, Daniel Muller +2 more
201221 citations Open access
Semantic Scholar
Significance of the Diversification of Wheat Species for the Assembly and Functioning of the Root-Associated Microbiome
Cécile Gruet, Daniel Muller, Y. Moënne-Loccoz
2022Frontiers in Microbiology18 citations Open access
Semantic Scholar
Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields.
M. Kyselková, Juliana Almario, J. Kopecký, M. Ságová-Marečková +4 more
2014Environmental Microbiology Reports18 citations
Semantic Scholar
Field Site-Specific Effects of an Azospirillum Seed Inoculant on Key Microbial Functional Groups in the Rhizosphere
Sébastien Renoud, Jordan Vacheron, D. Abrouk, C. Prigent-Combaret +3 more
2022Frontiers in Microbiology14 citations Open access
Semantic Scholar
Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere.
Sébastien Renoud, M. Bouffaud, A. Dubost, C. Prigent-Combaret +3 more
2020FEMS Microbiology Ecology14 citations Open access
Semantic Scholar
Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women
Myriam Chiaruzzi, A. Barbry, A. Muggeo, A. Tristan +12 more
2020Applied and Environmental Microbiology13 citations Open access
Semantic Scholar
Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway
Cécile Gruet, Andréa Oudot, D. Abrouk, Y. Moënne-Loccoz +1 more
2022Agriculture, Ecosystems & Environment. Applied Soil Ecology11 citations Open access
Semantic Scholar
Horizontal Acquisition of Prokaryotic Genes for Eukaryote Functioning and Niche Adaptation
Maxime Bruto, C. Prigent-Combaret, Patricia Luis, G. Hoff +2 more
201310 citations
Semantic Scholar
Genomic content of wheat has a higher influence than plant domestication status on the ability to interact with Pseudomonas plant growth-promoting rhizobacteria.
Cécile Gruet, Maroua Alaoui, Florence Gerin, C. Prigent-Combaret +3 more
2023Plant, Cell and Environment6 citations Open access
Semantic Scholar
Wheat genome architecture influences interactions with phytobeneficial microbial functional groups in the rhizosphere.
Cécile Gruet, D. Abrouk, A. Börner, Daniel Muller +1 more
2022Plant, Cell and Environment6 citations Open access
Semantic Scholar
Two novel species isolated from wheat rhizospheres in Serbia: Pseudomonas serbica sp. nov. and Pseudomonas serboccidentalis sp. nov.
I. Todorović, D. Abrouk, M. Kyselková, C. Lavire +5 more
2023Systematic and Applied Microbiology5 citations Open access
Semantic Scholar
Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria
Martha Helena Ramírez-Bahena, X. Nesme, Daniel Muller
2012Journal of Basic Microbiology5 citations
Semantic Scholar
Revival of traditional agricultural systems – A multidisciplinary on-farm survey of maize-bean intercropping reveals unexpected competition effects on beans
Noa Vazeux-Blumental, Laura Mathieu, Théo Trabac, C. Palaffre +15 more
2025bioRxiv3 citations Open access
Semantic Scholar
Draft Genome Sequence of Plant Growth-Promoting Bacillus altitudinis Strain PAE4
N. Ibrahim, M. Omar, Ghada A. Abu El Heba, Y. Moënne-Loccoz +2 more
2018Microbiology Resource Announcements2 citations Open access
Semantic Scholar
Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere
Jordan Vacheron, A. Dubost, D. Chapulliot, C. Prigent-Combaret +1 more
2017Genome Announcements1 citations Open access
Semantic Scholar

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Y. Moënne-Loccoz×33
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Y. Moënne-Loccoz — researcher profile on SciRah
C. Prigent-Combaret×25
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C. Prigent-Combaret — researcher profile on SciRah
Jordan Vacheron×11
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Jordan Vacheron — researcher profile on SciRah
A. Dubost×9
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A. Dubost — researcher profile on SciRah

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M. Bouffaud — researcher profile on SciRah

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D. Abrouk — researcher profile on SciRah

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X. Nesme — researcher profile on SciRah

Juliana Almario×7

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Juliana Almario — researcher profile on SciRah

Sébastien Renoud×7

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Sébastien Renoud — researcher profile on SciRah

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Maxime Bruto×5

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Maxime Bruto — researcher profile on SciRah

Florent Lassalle×5

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Florent Lassalle — researcher profile on SciRah