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Julie C. Dunning Hotopp · SciRah

Researcher profile · Semantic Scholar

Julie C. Dunning Hotopp

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Julie C. Dunning Hotopp — researcher profile on SciRah

h-index: 33
Works: 76
Citations: 5,653

Most-cited papers

Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis
L. Baldo, Julie C. Dunning Hotopp, K. Jolley, S. Bordenstein +6 more
2006Applied and Environmental Microbiology835 citations Open access
Semantic Scholar
Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
Julie C. Dunning Hotopp, M. E. Clark, D. C. S. G. Oliveira, J. Foster +16 more
2007Science812 citations
Semantic Scholar
Comparative Genomics of Emerging Human Ehrlichiosis Agents
Julie C. Dunning Hotopp, Ming-Qun Lin, R. Madupu, Jonathan Crabtree +36 more
2006PLoS Genetics493 citations Open access
Semantic Scholar
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
C. Donati, N. Hiller, H. Tettelin, A. Muzzi +14 more
2010Genome Biology391 citations Open access
Semantic Scholar
Horizontal gene transfer between bacteria and animals
Julie C. Dunning Hotopp
2011Trends in Genetics334 citations Open access
Semantic Scholar
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination
S. Budroni, Emilio Siena, Julie C. Dunning Hotopp, Kate L. Seib +12 more
2011Proceedings of the National Academy of Sciences of the United States of America217 citations Open access
Semantic Scholar
X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.
J. Elkins, M. J. Ryle, I. Clifton, Julie C. Dunning Hotopp +5 more
2002Biochemistry194 citations
Semantic Scholar
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans
Christopher A. Desjardins, G. Cerqueira, J. Goldberg, Julie C. Dunning Hotopp +12 more
2013Nature Genetics167 citations Open access
Semantic Scholar
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
S. Salzberg, Julie C. Dunning Hotopp, A. Delcher, Mihai Pop +3 more
2005Genome Biology148 citations Open access
Semantic Scholar
Streptococcus pneumoniae in Biofilms Are Unable to Cause Invasive Disease Due to Altered Virulence Determinant Production
C. Sánchez, Nikhil Kumar, A. Lizcano, P. Shivshankar +4 more
2011PLoS ONE119 citations Open access
Semantic Scholar
Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes.
Julie C. Dunning Hotopp, R. Grifantini, Nikhil Kumar, Yih-Ling Tzeng +8 more
2006Microbiology117 citations Open access
Semantic Scholar
Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer
Samantha N. McNulty, J. Foster, M. Mitreva, Julie C. Dunning Hotopp +9 more
2010PLoS ONE115 citations Open access
Semantic Scholar
Brood Ball-Mediated Transmission of Microbiome Members in the Dung Beetle, Onthophagus taurus (Coleoptera: Scarabaeidae)
A. Estes, D. Hearn, E. Snell-Rood, Michele Feindler +4 more
2013PLoS ONE112 citations Open access
Semantic Scholar
The genome of Onchocerca volvulus, agent of river blindness
J. Cotton, S. Bennuru, Alexandra Grote, Bhavana Harsha +23 more
2016Nature Microbiology111 citations Open access
Semantic Scholar
Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say.
S. Bordenstein, C. Paraskevopoulos, Julie C. Dunning Hotopp, P. Sapountzis +5 more
2008Molecular biology and evolution106 citations Open access
Semantic Scholar
Extensive genomic diversity of closely related Wolbachia strains.
N. Ishmael, Julie C. Dunning Hotopp, P. Ioannidis, Sarah A Biber +7 more
2009Microbiology93 citations Open access
Semantic Scholar
Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data
K. Robinson, Jonathan Crabtree, J. Mattick, Kathleen E. Anderson +1 more
2017Microbiome79 citations Open access
Semantic Scholar
Lateral gene transfer between prokaryotes and eukaryotes
Karsten B. Sieber, Robin E. Bromley, Julie C. Dunning Hotopp
2017Experimental Cell Research76 citations Open access
Semantic Scholar
In Vivo-Selected Compensatory Mutations Restore the Fitness Cost of Mosaic penA Alleles That Confer Ceftriaxone Resistance in Neisseria gonorrhoeae
Leah R. Vincent, S. Kerr, Yang Tan, Joshua Tomberg +5 more
2018mBio65 citations Open access
Semantic Scholar
Using Core Genome Alignments To Assign Bacterial Species
M. Chung, James B. Munro, H. Tettelin, Julie C. Dunning Hotopp
2018mSystems64 citations Open access
Semantic Scholar
Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis
M. Mustapha, Jane W. Marsh, M. Krauland, J. O. Fernández +7 more
2015EBioMedicine64 citations Open access
Semantic Scholar
The two-component response regulator LiaR regulates cell wall stress responses, pili expression and virulence in group B Streptococcus.
D. Klinzing, N. Ishmael, Julie C. Dunning Hotopp, H. Tettelin +3 more
2013Microbiology64 citations Open access
Semantic Scholar
A Review of Bacteria-Animal Lateral Gene Transfer May Inform Our Understanding of Diseases like Cancer
K. Robinson, Karsten B. Sieber, Julie C. Dunning Hotopp
2013PLoS Genetics58 citations Open access
Semantic Scholar
Whole-Genome Association Study on Tissue Tropism Phenotypes in Group A Streptococcus
D. Bessen, Nikhil Kumar, G. S. Hall, David R. Riley +7 more
2011Journal of Bacteriology52 citations Open access
Semantic Scholar
Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes
Eric S. Tvedte, M. Gasser, B. Sparklin, J. Michalski +8 more
2021G350 citations Open access
Semantic Scholar
Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae
L. Klasson, Nikhil Kumar, Robin E. Bromley, Karsten B. Sieber +5 more
2014BMC Genomics49 citations Open access
Semantic Scholar
Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys
P. Ioannidis, Yong Lu, Nikhil Kumar, T. Creasy +10 more
2014BMC Genomics46 citations Open access
Semantic Scholar
Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi
P. Ioannidis, K. Johnston, David R. Riley, Nikhil Kumar +7 more
2013BMC Genomics41 citations Open access
Semantic Scholar
Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer
Nikhil Kumar, T. Creasy, Yezhou Sun, Melissa Flowers +2 more
2012BMC Research Notes40 citations Open access
Semantic Scholar
Genomic Investigation Reveals Highly Conserved, Mosaic, Recombination Events Associated with Capsular Switching among Invasive Neisseria meningitidis Serogroup W Sequence Type (ST)-11 Strains
M. Mustapha, Jane W. Marsh, M. Krauland, J. O. Fernández +7 more
2016Genome Biology and Evolution36 citations Open access
Semantic Scholar
Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples
Nikhil Kumar, Ming-Qun Lin, Xuechu Zhao, Sandra H Ott +7 more
2016Scientific Reports35 citations Open access
Semantic Scholar
Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States
M. Krauland, Julie C. Dunning Hotopp, David R. Riley, S. Daugherty +5 more
2012PLoS ONE35 citations Open access
Semantic Scholar
New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria
P. Ioannidis, Julie C. Dunning Hotopp, P. Sapountzis, S. Siozios +5 more
2007BMC Genomics33 citations Open access
Semantic Scholar
Alternative substrates of 2,4-dichlorophenoxyacetate/α-ketoglutarate dioxygenase
Julie C. Dunning Hotopp, R. Hausinger
200129 citations
Semantic Scholar
Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis
L. Tallon, Xinyue Liu, S. Bennuru, M. Chibucos +7 more
2014BMC Genomics28 citations Open access
Semantic Scholar
Aligner optimization increases accuracy and decreases compute times in multi-species sequence data
K. Robinson, Aziah S. Hawkins, Ivette Santana-Cruz, R. S. Adkins +9 more
2017Microbial Genomics27 citations Open access
Semantic Scholar
Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
S. Salzberg, Julie C. Dunning Hotopp, A. Delcher, Mihai Pop +3 more
2005Genome Biology26 citations Open access
Semantic Scholar
Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells
T. Watkins, Hong Liu, M. Chung, T. Hazen +3 more
2018Microbial Genomics25 citations Open access
Semantic Scholar
Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis
Ming-Qun Lin, Qingming Xiong, M. Chung, S. Daugherty +9 more
2021BMC Genomics23 citations Open access
Semantic Scholar
Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase.
Julie C. Dunning Hotopp, T. Auchtung, D. A. Hogan, R. Hausinger
2003Journal of Inorganic Biochemistry22 citations
Semantic Scholar
Evaluation of a high-throughput, cost-effective Illumina library preparation kit
Eric S. Tvedte, J. Michalski, Shao-Ji Cheng, Rayanna S. Patkus +6 more
2021Scientific Reports21 citations Open access
Semantic Scholar
Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells
Sheila Z. Kimaro Mlacha, S. Romero-Steiner, Julie C. Dunning Hotopp, Nikhil Kumar +12 more
2013BMC Genomics21 citations Open access
Semantic Scholar
Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection
Sheila Z. Kimaro Mlacha, Teresa C. T. Peret, Nikhil Kumar, S. Romero-Steiner +9 more
2013BMC Genomics21 citations Open access
Semantic Scholar
Ancestral characterization of 1018 cancer cell lines highlights disparities, and reveals gene expression and mutational differences.
M. D. Kessler, N. Bateman, T. Conrads, G. Maxwell +2 more
2019Cancer20 citations Open access
Semantic Scholar
Probing the 2,4-dichlorophenoxyacetate/alpha-ketoglutarate dioxygenase substrate-binding site by site-directed mutagenesis and mechanism-based inactivation.
Julie C. Dunning Hotopp, R. Hausinger
2002Biochemistry20 citations
Semantic Scholar
Mobile elements and viral integrations prompt considerations for bacterial DNA integration as a novel carcinogen
K. Robinson, Julie C. Dunning Hotopp
2014Cancer Letters18 citations Open access
Semantic Scholar
Isolation of a divergent strain of Rickettsia japonica from Dew’s Australian bat argasid ticks (Argas (Carios) dewae) in Victoria, Australia.
L. Izzard, M. Chung, Julie C. Dunning Hotopp, G. Vincent +3 more
2018Ticks and Tick-borne Diseases14 citations Open access
Semantic Scholar
Multispecies Transcriptomics Data Set of Brugia malayi, Its Wolbachia Endosymbiont wBm, and Aedes aegypti across the B. malayi Life Cycle
M. Chung, Laura E. Teigen, S. Libro, Robin E. Bromley +6 more
2018Microbiology Resource Announcements13 citations Open access
Semantic Scholar
Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
M. Chung, S. T. Small, David Serre, P. Zimmerman +1 more
2017Pathogens and Disease13 citations Open access
Semantic Scholar
Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease
Ming-Qun Lin, Karen S. Bachman, Zhi-Hui Cheng, S. Daugherty +9 more
2017Microbial Biotechnology10 citations Open access
Semantic Scholar

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