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C. Fraser · SciRah

Researcher profile · Semantic Scholar

C. Fraser

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C. Fraser — researcher profile on SciRah

h-index: 95
Works: 282
Citations: 57K

Most-cited papers

Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Monika Gulia-Nuss, Andrew B. Nuss, Jason M. Meyer, D. Sonenshine +89 more
2016Nature Communications486 citations Open access
Semantic Scholar
Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
Alison R. Erickson, B. Cantarel, Regina Lamendella, Youssef Darzi +11 more
2012PLoS ONE401 citations Open access
Semantic Scholar
Gut microbiota in MS: possible influence of immunomodulators
B. Cantarel, E. Waubant, C. Chehoud, J. Kuczynski +5 more
2015Journal of Investigative Medicine242 citations Open access
Semantic Scholar
Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions
M. McBurney, C. Davis, C. Fraser, B. Schneeman +4 more
2019Journal of NutriLife235 citations Open access
Semantic Scholar
Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome
M. Zupancic, B. Cantarel, Zhen-Qiu Liu, E. Drabek +13 more
2012PLoS ONE216 citations Open access
Semantic Scholar
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
N. Kyrpides, P. Hugenholtz, J. Eisen, T. Woyke +60 more
2014PLoS Biology208 citations Open access
Semantic Scholar
The microbiome explored: recent insights and future challenges
M. Blaser, P. Bork, C. Fraser, R. Knight +1 more
2013Nature Reviews Microbiology189 citations
Semantic Scholar
Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids
S. Casjens, E. Mongodin, Wei-Gang Qiu, B. Luft +15 more
2012PLoS ONE189 citations Open access
Semantic Scholar
Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells
M. Humphrys, T. Creasy, Yezhou Sun, A. Shetty +10 more
2013PLoS ONE185 citations Open access
Semantic Scholar
Molecular mechanisms of probiotic prevention of antibiotic-associated diarrhea
Solomon A. Mekonnen, D. Merenstein, C. Fraser, M. Marco
2020Current Opinion in Biotechnology168 citations Open access
Semantic Scholar
Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption
E. Eloe-Fadrosh, Arthur Brady, Jonathan Crabtree, E. Drabek +9 more
2015mBio154 citations Open access
Semantic Scholar
Pulmonary Nontuberculous Mycobacterial Infection. A Multisystem, Multigenic Disease.
E. P. Szymanski, J. Leung, C. Fowler, C. Haney +18 more
2015American Journal of Respiratory and Critical Care Medicine142 citations Open access
Semantic Scholar
Aerosol Mycobacterium tuberculosis Infection Causes Rapid Loss of Diversity in Gut Microbiota
K. Winglee, E. Eloe-Fadrosh, Shashank Gupta, Haidan Guo +2 more
2014PLoS ONE131 citations Open access
Semantic Scholar
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi
M. Chibucos, Sameh S. M. Soliman, T. Gebremariam, Hongkyu Lee +15 more
2016Nature Communications124 citations Open access
Semantic Scholar
High-level Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Widely Separated Outbreaks
H. Tettelin, R. Davidson, Sonia Agrawal, M. Aitken +18 more
2014Emerging Infectious Diseases121 citations Open access
Semantic Scholar
Culture-Independent Evaluation of the Appendix and Rectum Microbiomes in Children with and without Appendicitis
H. Jackson, E. Mongodin, Katherine P. Davenport, C. Fraser +2 more
2014PLoS ONE111 citations Open access
Semantic Scholar
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
T. Hazen, J. Sahl, C. Fraser, M. Donnenberg +2 more
2013Proceedings of the National Academy of Sciences of the United States of America110 citations Open access
Semantic Scholar
Impact of Oral Typhoid Vaccination on the Human Gut Microbiota and Correlations with S. Typhi-Specific Immunological Responses
E. Eloe-Fadrosh, Monica A. McArthur, Anna M. Seekatz, E. Drabek +3 more
2013PLoS ONE99 citations Open access
Semantic Scholar
Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi
S. Casjens, Eddie B. Gilcrease, M. Vujadinovic, E. Mongodin +4 more
2017BMC Genomics98 citations Open access
Semantic Scholar
Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli
Susan R. Steyert, J. Sahl, C. Fraser, L. Teel +2 more
2012Front. Cell. Inf. Microbio.95 citations Open access
Semantic Scholar
Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation
E. Mongodin, S. Casjens, J. F. Bruno, Yun Xu +11 more
2013BMC Genomics93 citations Open access
Semantic Scholar
Defining the Phylogenomics of Shigella Species: a Pathway to Diagnostics
J. Sahl, C. R. Morris, J. Emberger, C. Fraser +7 more
2015Journal of Clinical Microbiology86 citations Open access
Semantic Scholar
New signaling pathways govern the host response to C. albicans infection in various niches
Yaoping Liu, A. Shetty, Jennifer A. Schwartz, L. Bradford +9 more
2015Genome Research84 citations Open access
Semantic Scholar
Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic
M. Eppinger, T. Pearson, Sara S. K. Koenig, O. Pearson +13 more
2014mBio84 citations Open access
Semantic Scholar
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential
K. Moser, E. Drabek, A. Dwivedi, Emily M. Stucke +30 more
2019Genome Medicine77 citations Open access
Semantic Scholar
Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions
Joana C. Silva, E. Cornillot, Carrie McCracken, Sahar Usmani-Brown +28 more
2016Scientific Reports74 citations Open access
Semantic Scholar
Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection
Anna M. Seekatz, Aruna Panda, D. Rasko, F. Toapanta +7 more
2013PLoS ONE65 citations Open access
Semantic Scholar
Primordial origin and diversification of plasmids in Lyme disease agent bacteria
S. Casjens, Lia Di, Saymon Akther, E. Mongodin +4 more
2018BMC Genomics63 citations Open access
Semantic Scholar
Bifidobacterium animalis subsp. lactis BB-12 Protects against Antibiotic-Induced Functional and Compositional Changes in Human Fecal Microbiome
D. Merenstein, C. Fraser, R. Roberts, Tian Liu +8 more
2021Nutrients62 citations Open access
Semantic Scholar
Probiotics: achieving a better regulatory fit.
D. Hoffmann, C. Fraser, F. Palumbo, J. Ravel +2 more
2014Food and drug law journal61 citations
Semantic Scholar
Toward unrestricted use of public genomic data
R. Amann, S. Baichoo, B. Blencowe, P. Bork +46 more
2019Science56 citations Open access
Semantic Scholar
Salmonella Typhi Colonization Provokes Extensive Transcriptional Changes Aimed at Evading Host Mucosal Immune Defense During Early Infection of Human Intestinal Tissue
Kourtney P. Nickerson, Stefania Senger, Y. Zhang, R. Lima +9 more
2018EBioMedicine47 citations Open access
Semantic Scholar
Ghrelin receptor deletion reduces binge-like alcohol drinking in rats
L. Zallar, Silvia Beurmann, B. Tunstall, C. Fraser +3 more
2019Journal of neuroendocrinology46 citations
Semantic Scholar
Transcriptional Attenuation Controls Macrolide Inducible Efflux and Resistance in Streptococcus pneumoniae and in Other Gram-Positive Bacteria Containing mef/mel(msr(D)) Elements
Scott T. Chancey, Xian-He Bai, Nikhil Kumar, E. Drabek +9 more
2015PLoS ONE44 citations Open access
Semantic Scholar
BorreliaBase: a phylogeny-centered browser of Borrelia genomes
Lia Di, Pedro E. Pagan, Daniel Packer, Che L. Martin +8 more
2014BMC Bioinformatics41 citations Open access
Semantic Scholar
‘I'm just a mother. I'm nothing special, they're all professionals’: parental advocacy as an aid to parental engagement
B. Featherstone, C. Fraser
201239 citations Open access
Semantic Scholar
Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection
J. Sahl, Jeticia R. Sistrunk, C. Fraser, E. Hine +7 more
2015mBio38 citations Open access
Semantic Scholar
The Oral Bacterial Communities of Children with Well-Controlled HIV Infection and without HIV Infection
Brittany E. Goldberg, E. Mongodin, Cheron Jones, M. Chung +3 more
2015PLoS ONE38 citations Open access
Semantic Scholar
Standardized Metadata for Human Pathogen/Vector Genomic Sequences
V. Dugan, S. Emrich, Gloria I. Giraldo-Calderón, O. Harb +54 more
2014PLoS ONE38 citations Open access
Semantic Scholar
Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1
Olukemi O. Ifeonu, M. Chibucos, J. Orvis, Qi Su +11 more
2016Pathogens and Disease37 citations Open access
Semantic Scholar
Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples
Nikhil Kumar, Ming-Qun Lin, Xuechu Zhao, Sandra H Ott +7 more
2016Scientific Reports35 citations Open access
Semantic Scholar
Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections
B. Sharma-Kuinkel, E. Mongodin, Jason R. Myers, Kelly L. Vore +5 more
2015Open Forum Infectious Diseases35 citations Open access
Semantic Scholar
Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding
Silvia Grant-Beurmann, J. Jumare, N. Ndembi, O. Matthew +5 more
2022Microbiome33 citations Open access
Semantic Scholar
FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses
M. Chung, R. S. Adkins, J. Mattick, K. Bradwell +7 more
2021mSystems30 citations Open access
Semantic Scholar
A Distinct Gut Microbiota Exists Within Crohn's Disease-Related Perianal Fistulae.
Bryce E. Haac, Nicholas C. Palmateer, Max E. Seaton, R. VanYperen +2 more
2019Journal of Surgical Research30 citations
Semantic Scholar
Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type Salmonella enterica Serovar Typhi
Yan Zhang, Arthur Brady, Cheron Jones, Yang Song +8 more
2018mBio28 citations Open access
Semantic Scholar
Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis
L. Tallon, Xinyue Liu, S. Bennuru, M. Chibucos +7 more
2014BMC Genomics28 citations Open access
Semantic Scholar
Aligner optimization increases accuracy and decreases compute times in multi-species sequence data
K. Robinson, Aziah S. Hawkins, Ivette Santana-Cruz, R. S. Adkins +9 more
2017Microbial Genomics27 citations Open access
Semantic Scholar
Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses
M. Chung, Laura E. Teigen, Hong Liu, S. Libro +13 more
2018Scientific Reports26 citations Open access
Semantic Scholar
The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of Aplysia
J. Orvis, C. Albertin, Pragya Shrestha, Shuangshuang Chen +11 more
2022Proceedings of the National Academy of Sciences of the United States of America25 citations Open access
Semantic Scholar

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