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A. Fujiyama · SciRah

Researcher profile · Semantic Scholar

A. Fujiyama

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A. Fujiyama — researcher profile on SciRah

h-index: 71
Works: 264
Citations: 51K

Most-cited papers

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
J. Bowman, T. Kohchi, K. Yamato, J. Jenkins +109 more
2017Cell1,050 citations Open access
Semantic Scholar
Genome evolution in the allotetraploid frog Xenopus laevis
Adam M. Session, Yoshinobu Uno, T. Kwon, J. Chapman +70 more
2016Nature909 citations Open access
Semantic Scholar
The Transgenic RNAi Project at Harvard Medical School: Resources and Validation
L. Perkins, L. Holderbaum, Rong Tao, Yan-Hui Hu +36 more
2015Genetics603 citations Open access
Semantic Scholar
The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.
T. Nishiyama, H. Sakayama, J. de Vries, Henrik Buschmann +56 more
2018Cell444 citations Open access
Semantic Scholar
Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein
T. Hashimoto, D. Horikawa, Y. Saito, H. Kuwahara +24 more
2016Nature Communications360 citations Open access
Semantic Scholar
Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy
H. Ishiura, K. Doi, J. Mitsui, Jun Yoshimura +63 more
2018Nature Genetics288 citations
Semantic Scholar
High-quality genome assembly of the silkworm, Bombyx mori.
M. Kawamoto, A. Jouraku, A. Toyoda, K. Yokoi +6 more
2019Insect Biochemistry and Molecular Biology237 citations Open access
Semantic Scholar
Hemichordate genomes and deuterostome origins
O. Simakov, T. Kawashima, Ferdinand Marlétaz, J. Jenkins +57 more
2015Nature234 citations Open access
Semantic Scholar
A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly
H. Nishikawa, T. Iijima, R. Kajitani, J. Yamaguchi +14 more
2015Nature Genetics225 citations Open access
Semantic Scholar
De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication
Zelin Chen, Yoshihiro Omori, S. Koren, Takuya Shirokiya +12 more
2018Science Advances190 citations Open access
Semantic Scholar
Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice
A. Uchimura, Mayumi Higuchi, Yohei Minakuchi, M. Ohno +6 more
2015Genome Research171 citations Open access
Semantic Scholar
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity
Erik R. Hanschen, T. Marriage, P. Ferris, Takashi Hamaji +18 more
2016Nature Communications146 citations Open access
Semantic Scholar
Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits
Mai F. Minamikawa, K. Nonaka, E. Kaminuma, H. Kajiya-Kanegae +13 more
2017Scientific Reports135 citations Open access
Semantic Scholar
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
R. Kajitani, D. Yoshimura, M. Okuno, Yohei Minakuchi +6 more
2019Nature Communications118 citations Open access
Semantic Scholar
Title Genome sequence and analysis of the Japanese morning gloryIpomoea nil
Atsushi Hoshino, Vasanthan Jayakumar, E. Nitasaka, A. Toyoda +30 more
201898 citations
Semantic Scholar
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
M. Ravinet, Kohta Yoshida, S. Shigenobu, A. Toyoda +2 more
2017bioRxiv95 citations Open access
Semantic Scholar
Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
Tokurou Shimizu, A. Kitajima, K. Nonaka, T. Yoshioka +8 more
2016PLoS ONE91 citations Open access
Semantic Scholar
Gene‐body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis
Soichi Inagaki, Mayumi Takahashi, Aoi Hosaka, Tasuku Ito +4 more
2017EMBO Journal74 citations Open access
Semantic Scholar
Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding1
Anzu Minami, Kenji Yano, R. Gamuyao, K. Nagai +17 more
2018Plant Physiology71 citations Open access
Semantic Scholar
Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres
Wei H. Shang, T. Hori, Frederick G. Westhorpe, Kristina M. Godek +10 more
2016Nature Communications71 citations Open access
Semantic Scholar
A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species
S. Kubota, T. Iwasaki, Kousuke Hanada, A. Nagano +7 more
2015PLoS Genetics71 citations Open access
Semantic Scholar
Genetic basis for variation in salinity tolerance between stickleback ecotypes
M. Kusakabe, A. Ishikawa, M. Ravinet, Kohta Yoshida +4 more
2017Molecular Ecology63 citations
Semantic Scholar
Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach
Tokurou Shimizu, Yasuhiro Tanizawa, T. Mochizuki, Hideki Nagasaki +5 more
2017Frontiers in Genetics63 citations Open access
Semantic Scholar
Genome-Wide Negative Feedback Drives Transgenerational DNA Methylation Dynamics in Arabidopsis
Tasuku Ito, Y. Tarutani, T. To, Mohamed Kassam +8 more
2015PLoS Genetics60 citations Open access
Semantic Scholar
Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Atsushi Hoshino, Vasanthan Jayakumar, E. Nitasaka, Atsushi Toyoda +30 more
2016Nature Communications55 citations Open access
Semantic Scholar
Single-neuron and genetic correlates of autistic behavior in macaque
Kyoko Yoshida, Yasuhiro Go, I. Kushima, A. Toyoda +6 more
2016Science Advances53 citations Open access
Semantic Scholar
Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species
S. Reuscher, T. Furuta, Kanako Bessho-Uehara, Michele Cosi +5 more
2018Communications Biology51 citations Open access
Semantic Scholar
HJURP is involved in the expansion of centromeric chromatin
Marinela Perpelescu, T. Hori, A. Toyoda, Sadahiko Misu +5 more
2015Molecular Biology of the Cell51 citations Open access
Semantic Scholar
Direct estimation of de novo mutation rates in a chimpanzee parent-offspring trio by ultra-deep whole genome sequencing
Shoji Tatsumoto, Yasuhiro Go, Kentarou Fukuta, Hideki Noguchi +6 more
2017Scientific Reports50 citations Open access
Semantic Scholar
OryzaGenome: Genome Diversity Database of Wild Oryza Species
Hajime Ohyanagi, Toshinobu Ebata, Xue-Hui Huang, Hao Gong +10 more
2015Plant and Cell Physiology46 citations Open access
Semantic Scholar
Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori
Y. Kobayashi, Yosui Nojima, Takuma Sakamoto, K. Iwabuchi +6 more
2019Scientific Reports45 citations Open access
Semantic Scholar
A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium.
H. Sekimoto, Ayumi Komiya, Natsumi Tsuyuki, Junko Kawai +9 more
2022New Phytologist44 citations
Semantic Scholar
Different contributions of local‐ and distant‐regulatory changes to transcriptome divergence between stickleback ecotypes
A. Ishikawa, M. Kusakabe, Kohta Yoshida, M. Ravinet +4 more
2017Evolution; international journal of organic evolution44 citations Open access
Semantic Scholar
Evolution of sequence-specific anti-silencing systems in Arabidopsis
Aoi Hosaka, Raku Saito, Kazuya Takashima, Taku Sasaki +7 more
2017Nature Communications41 citations Open access
Semantic Scholar
Constitutive centromere-associated network controls centromere drift in vertebrate cells
T. Hori, Naoko Kagawa, A. Toyoda, A. Fujiyama +5 more
2017Journal of Cell Biology39 citations Open access
Semantic Scholar
Anisogamy evolved with a reduced sex-determining region in volvocine green algae
Takashi Hamaji, Hiroko Kawai-Toyooka, Haruka Uchimura, Masahiro Suzuki +7 more
2018Communications Biology37 citations Open access
Semantic Scholar
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels
M. Shenton, Masaaki Kobayashi, S. Terashima, Hajime Ohyanagi +17 more
2020Genome Biology and Evolution36 citations Open access
Semantic Scholar
Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance
Hiromi Kato, Hiroshi Mori, F. Maruyama, A. Toyoda +11 more
2015DNA Research34 citations Open access
Semantic Scholar
Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis
Kengo Sato, Y. Kuroki, Wakako Kumita, A. Fujiyama +6 more
2015Scientific Reports33 citations Open access
Semantic Scholar
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians
An Yang, Akane Kawaguchi, Chen Zhao, A. Toyoda +9 more
2018Zoological Letters32 citations Open access
Semantic Scholar
Hormone-responsive genes in the SHH and WNT/β-catenin signaling pathways influence urethral closure and phallus growth†
Yu Chen, Hongshi Yu, A. Pask, A. Fujiyama +4 more
2018Biology of Reproduction30 citations Open access
Semantic Scholar
Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment
Tasuku Ito, Haruki Nishio, Y. Tarutani, N. Emura +5 more
2019bioRxiv29 citations Open access
Semantic Scholar
Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes
Takashi Hamaji, Y. Mogi, P. Ferris, T. Mori +11 more
2016G3: Genes, Genomes, Genetics29 citations Open access
Semantic Scholar
RNA interference-independent reprogramming of DNA methylation in Arabidopsis
T. To, Yuichiro Nishizawa, Soichi Inagaki, Y. Tarutani +5 more
2020Nature Plants25 citations
Semantic Scholar
OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species
H. Kajiya-Kanegae, Hajime Ohyanagi, Toshinobu Ebata, Yasuhiro Tanizawa +16 more
2021Rice24 citations Open access
Semantic Scholar
Development of a nuclear transformation system with a codon-optimized selection marker and reporter genes in Pyropia yezoensis (Rhodophyta)
R. Hirata, T. Uji, Satoru Fukuda, H. Mizuta +3 more
2014Journal of Applied Phycology23 citations
Semantic Scholar
Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation
H. Urushihara, H. Kuwayama, Kensuke Fukuhara, T. Itoh +14 more
2015BMC Genomics22 citations Open access
Semantic Scholar
Author Correction: RNA interference-independent reprogramming of DNA methylation in Arabidopsis
T. To, Yuichiro Nishizawa, Soichi Inagaki, Y. Tarutani +5 more
2020Nature Plants20 citations Open access
Semantic Scholar
Whole‐genome sequencing reveals small genomic regions of introgression in an introduced crater lake population of threespine stickleback
Kohta Yoshida, R. Miyagi, S. Mori, Aya Takahashi +4 more
2016Ecology and Evolution19 citations Open access
Semantic Scholar
Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera
M. Nikaido, S. Kondo, Zi-Cong Zhang, Jiaqi Wu +12 more
2020DNA Research17 citations Open access
Semantic Scholar

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