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K. Khairy · SciRah

Researcher profile · Semantic Scholar

K. Khairy

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K. Khairy — researcher profile on SciRah

h-index: 21
Works: 51
Citations: 4,459

Most-cited papers

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Zhi-Hao Zheng, J. S. Lauritzen, E. Perlman, Cam Robinson +19 more
2017bioRxiv940 citations Open access
Semantic Scholar
A connectome and analysis of the adult Drosophila central brain
Louis K. Scheffer, Shan C. Xu, M. Januszewski, Zhi-Yuan Lu +104 more
2020bioRxiv929 citations Open access
Semantic Scholar
Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy
Raju Tomer, K. Khairy, F. Amat, P. Keller
2012Nature Methods534 citations
Semantic Scholar
Fast high-contrast imaging of animal development with scanned light sheet-based structured illumination microscopy
P. Keller, Annette D. Schmidt, A. Santella, K. Khairy +3 more
2010Nature Methods509 citations Open access
Semantic Scholar
A Connectome of the Adult Drosophila Central Brain
S. Xu, Michał Januszewski, Zhi-Yuan Lu, Shin-ya Takemura +101 more
2020bioRxiv178 citations Open access
Semantic Scholar
Drawing an elephant with four complex parameters
J. Mayer, K. Khairy, J. Howard
2010144 citations
Semantic Scholar
Molecular-scale topographic cues induce the orientation and directional movement of fibroblasts on two-dimensional collagen surfaces.
K. Poole, K. Khairy, J. Friedrichs, Clemens M. Franz +3 more
2005Journal of Molecular Biology131 citations
Semantic Scholar
Humic substances : structures, properties and uses
G. Davies, E. Ghabbour, K. Khairy
1998125 citations
Semantic Scholar
Membrane Invaginations Reveal Cortical Sites that Pull on Mitotic Spindles in One-Cell C. elegans Embryos
S. Redemann, J. Pécréaux, Nathan W. Goehring, K. Khairy +3 more
2010PLoS ONE124 citations Open access
Semantic Scholar
Shapes of Red Blood Cells: Comparison of 3D Confocal Images with the Bilayer-Couple Model
K. Khairy, J. Foo, J. Howard
2008Cellular and Molecular Bioengineering116 citations Open access
Semantic Scholar
Phase Separation mediates NUP98 Fusion Oncoprotein Leukemic Transformation
B. Chandra, N. Michmerhuizen, H. Shirnekhi, S. Tripathi +25 more
2021Cancer Discovery107 citations Open access
Semantic Scholar
Reconstructing embryonic development
K. Khairy, P. Keller
2011Genesis92 citations Open access
Semantic Scholar
Shedding light on the system: studying embryonic development with light sheet microscopy.
Raju Tomer, K. Khairy, P. Keller
2011Current Opinion in Genetics and Development70 citations
Semantic Scholar
A community-developed open-source computational ecosystem for big neuro data
J. Vogelstein, E. Perlman, Benjamin Falk, Alex Baden +27 more
2018Nature Methods61 citations Open access
Semantic Scholar
Calculating slow-motional electron paramagnetic resonance spectra from molecular dynamics using a diffusion operator approach.
D. Budil, K. Sale, K. Khairy, P. Fajer
2006Journal of Physical Chemistry A61 citations
Semantic Scholar
Minimum-energy vesicle and cell shapes calculated using spherical harmonics parameterization
K. Khairy, J. Howard
201154 citations Open access
Semantic Scholar
Creating nanoscopic collagen matrices using atomic force microscopy
Feng-Zhi Jiang, K. Khairy, K. Poole, J. Howard +1 more
2004Microscopy research and technique (Print)46 citations Open access
Semantic Scholar
AML-158 Phase Separation Mediates NUP98 Fusion Oncoprotein Leukemic Transformation.
N. Michmerhuizen, Bappaditya Chandra, H. Shirnekhi, Swarnendu Tripathi +23 more
2022Clinical Lymphoma, Myeloma & Leukemia34 citations
Semantic Scholar
Light sheet microscopy in cell biology.
Raju Tomer, K. Khairy, P. Keller
2013Methods in molecular biology32 citations
Semantic Scholar
Spherical harmonics-based parametric deconvolution of 3D surface images using bending energy minimization
K. Khairy, J. Howard
2008Medical Image Anal.31 citations
Semantic Scholar
A scalable and modular automated pipeline for stitching of large electron microscopy datasets
G. Mahalingam, R. Torres, D. Kapner, Eric T. Trautman +18 more
2021bioRxiv29 citations Open access
Semantic Scholar
An Image Analysis Pipeline for Quantifying the Features of Fluorescently-Labeled Biomolecular Condensates in Cells
D. Baggett, A. Medyukhina, Swarnendu Tripathi, H. Shirnekhi +4 more
2022Frontiers in Bioinformatics16 citations Open access
Semantic Scholar
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach
K. Khairy, Gennady Denisov, S. Saalfeld
2018arXiv.org16 citations
Semantic Scholar
Nonlinear-least-squares analysis of slow motional regime EPR spectra.
K. Khairy, D. Budil, P. Fajer
2006Journal of magnetic resonance (San Diego, Calif. 1997 : Print)16 citations
Semantic Scholar
A Comprehensive Analysis of Cerebellar Volumes in the 22Q11.2 Deletion Syndrome
J. Schmitt, John J. DeBevits, D. Roalf, K. Ruparel +13 more
2021Biological Psychiatry: Cognitive Neuroscience and Neuroimaging15 citations
Semantic Scholar
A Preferred Curvature-Based Continuum Mechanics Framework for Modeling Embryogenesis.
K. Khairy, W. C. Lemon, F. Amat, P. Keller
2018Biophysical Journal12 citations Open access
Semantic Scholar
Detection of Deformable Objects in 3D Images Using Markov-Chain Monte Carlo and Spherical Harmonics
K. Khairy, E. Reynaud, E. Stelzer
2008International Conference on Medical Image Computing and Computer-Assisted Intervention12 citations Open access
Semantic Scholar
Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.
K. Khairy, W. C. Lemon, F. Amat, P. Keller
2015Methods in molecular biology11 citations
Semantic Scholar
Tbx1 haploinsufficiency leads to local skull deformity, paraflocculus and flocculus dysplasia, and motor-learning deficit in 22q11.2 deletion syndrome
Tae-Yeon Eom, J. E. Schmitt, Yi-Ran Li, C. M. Davenport +18 more
2024Nature Communications7 citations Open access
Semantic Scholar
Z-UPSCALING: Optical Flow Guided Frame Interpolation for Isotropic Reconstruction of 3D EM Volumes
F. A. Ferede, A. Khalighifar, Jaison John, Krishnan Venkataraman +1 more
2024IEEE International Symposium on Biomedical Imaging4 citations Open access
Semantic Scholar
An End-To-End Pipeline for Fully Automatic Morphological Quantification of Mouse Brain Structures From MRI Imagery
Shahinur Alam, Tae-Yeon Eom, Jeffrey D. Steinberg, David G. Ackerman +4 more
2022Frontiers in Bioinformatics3 citations Open access
Semantic Scholar
Author response: A connectome and analysis of the adult Drosophila central brain
Louis K. Scheffer, Shan C. Xu, M. Januszewski, Zhi-Yuan Lu +104 more
20202 citations Open access
Semantic Scholar
Simulation of Slow Motion EPR Spectra with a General Hindering Potential Expanded in Spherical Harmonics
K. Khairy, P. Fajer, D. Budil
20092 citations Open access
Semantic Scholar
BRD4 recruitment into HP1 condensates desilences transcription without erasure of repressive chromatin
Christopher J. Brandon, Sarah Robinson-Thiewes, Mangesh H. Kaulage, Wojciech Rosikiewicz +23 more
2026Nature Cell Biology1 citations
Semantic Scholar
Mitochondrial proteostasis regulated by CRL5Ozz and Alix modulates skeletal muscle metabolism and fiber type
Yvan Campos, Gustavo Palacios, Elida Gomero, D. van de Vlekkert +14 more
2025Communications Biology1 citations Open access
Semantic Scholar
Hedgehog signaling controls astral microtubules and mitotic spindle orientation in neural progenitors and iPSCs
Feng-Ming Liu, Anna Medyukhina, Kris M. Olesen, A. Shirinifard +5 more
2025Frontiers in Cell and Developmental Biology1 citations Open access
Semantic Scholar
Deep-learning-based acceleration of MRI for radiotherapy planning of pediatric patients with brain tumors
Shahinur Alam, J. Uh, Alexander Dresner, Chia-Ho Hua +1 more
2023arXiv.org1 citations
Semantic Scholar
A Compact Airy Beam Light Sheet Microscope with a Tilted Cylindrical Lens References and Links
Zheng-Yi Yang, M. Prokopas, Jonathan Nylk, Clara Coll-Lladó +84 more
1 citations
Semantic Scholar
BRD4 recruitment desilences transcription without erasure or depletion of repressive chromatin
Christopher J. Brandon, Sarah Robinson-Thiewes, Mangesh H. Kaulage, Wojciech Rosikiewicz +23 more
2026bioRxiv0 citations
Semantic Scholar
Suppression of non-canonical autophagy induces endothelial and cardiac dysfunction
Joelle Magné, Suresh Poudel, R. Strawbridge, Luigi Mari +21 more
2025bioRxiv0 citations
Semantic Scholar
Canonical Hedgehog Signaling Controls Astral Microtubules and Mitotic Spindle Orientation in Neural Progenitors and iPSCs
Feng-Ming Liu, Anna Medyukhina, Kris M. Olesen, Abbas Shirinifard +5 more
2025bioRxiv0 citations Open access
Semantic Scholar
Pre-infection cerebral cortex structure predicts murine sepsis outcome
Robert M. Gallant, Shahinur Alam, Krishnan Venkataraman, Benjamin S. McKenna +2 more
2025PLoS ONE0 citations Open access
Semantic Scholar
Integrative Microscopy Approaches Reveal Specialized Signaling Filopodia Promote Morphogen Gradient Formation during Mammalian Development.
Eric T. Hall, Elizabeth R. Cleverdon, M. Dillard, Yan Zhang +14 more
2023Microscopy and Microanalysis0 citations
Semantic Scholar
The role of phase separation by NUP98 fusion oncoproteins in leukemia
Bappaditya Chandra, N. Michmerhuizen, H. Shirnekhi, Swarnendu Tripathi +9 more
2022Biophysical Journal0 citations Open access
Semantic Scholar
A for Stitching of Large Electron Microscopy Datasets 2
G. Mahalingam, R. Torres, Daniel Kapner, Eric T. Trautman +18 more
20220 citations
Semantic Scholar
Understanding the mechanism of TCF3-HLF fusion oncoprotein-driven leukemogenesis
H. Shirnekhi, S. Gorman, N. Michmerhuizen, Swarnendu Tripathi +4 more
2022Biophysical Journal0 citations Open access
Semantic Scholar
Deformable Registration of Whole Brain Zebrafish Microscopy Using an Implementation of the Flash Algorithm Within Ants
G. Fleishman, Miaomiao Zhang, N. Tustison, Isabel Espinosa-Medina +3 more
2019IEEE International Symposium on Biomedical Imaging0 citations
Semantic Scholar
A preferred curvature-based continuum mechanics framework for modeling embryogenesis with application to Drosophila mesoderm invagination
K. Khairy, W. C. Lemon, F. Amat, P. Keller
2017bioRxiv0 citations Open access
Semantic Scholar
Continuum mechanics modeling of Drosophila mesoderm invagination based on spherical harmonics accounts for long-range tissue remodeling
K. Khairy, W. C. Lemon, F. Amat, P. Keller
20150 citations Open access
Semantic Scholar
Segmentation-Less 3D Quantitative Image Analysis of Tissue Architecture with Application to the Localization of Organelles in MDCK Cysts
K. Khairy, U. Kržič, Petra H. Jakob, Philippe Girard +2 more
20090 citations Open access
Semantic Scholar

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