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S. Isobe · SciRah

Researcher profile · Semantic Scholar

S. Isobe

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S. Isobe — researcher profile on SciRah

h-index: 46
Works: 228
Citations: 11K

Most-cited papers

The Earth BioGenome Project 2020: Starting the clock
H. Lewin, S. Richards, Erez Lieberman Aiden, M. Allende +81 more
2022Proceedings of the National Academy of Sciences of the United States of America285 citations Open access
Semantic Scholar
A reference-grade wild soybean genome
M. Xie, Claire Yik-Lok Chung, Man-Wah Li, F. Wong +26 more
2019Nature Communications217 citations Open access
Semantic Scholar
Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar ‘Fielder’
Kazuhiro Sato, Fumitaka Abe, M. Mascher, G. Haberer +4 more
2021DNA Research124 citations Open access
Semantic Scholar
A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum
Michiharu Nakano, H. Hirakawa, E. Fukai, A. Toyoda +14 more
2021Communications Biology64 citations Open access
Semantic Scholar
Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
K. Shirasawa, T. Esumi, H. Hirakawa, Hideyuki Tanaka +4 more
2019bioRxiv62 citations Open access
Semantic Scholar
Chromosome-scale genome assembly of Japanese pear (Pyrus pyrifolia) variety ‘Nijisseiki’
K. Shirasawa, A. Itai, S. Isobe
2020bioRxiv57 citations Open access
Semantic Scholar
Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections
H. Kajiya-Kanegae, Hideki Nagasaki, A. Kaga, K. Hirano +9 more
2021DNA Research49 citations Open access
Semantic Scholar
Genome-Wide Association Studies (GWAS) for Yield and Weevil Resistance in Sweet potato (Ipomoea batatas (L.) Lam)
Y. Okada, Y. Monden, Kanoko Nokihara, K. Shirasawa +2 more
2019Plant Cell Reports40 citations
Semantic Scholar
Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms
Ken-ichi Kurotani, H. Hirakawa, K. Shirasawa, Yasuhiro Tanizawa +3 more
2023Plant and Cell Physiology39 citations Open access
Semantic Scholar
Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response
N. Yokotani, Yoshinori Hasegawa, Masaru Satô, H. Hirakawa +5 more
2021BMC Plant Biology32 citations Open access
Semantic Scholar
Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named ‘Sakurajima Daikon’ possessing giant root
K. Shirasawa, H. Hirakawa, N. Fukino, H. Kitashiba +1 more
2020DNA Research26 citations Open access
Semantic Scholar
Genome sequence of Hydrangea macrophylla and its application in analysis of the double flower phenotype
K. Nashima, K. Shirasawa, A. Ghelfi, H. Hirakawa +10 more
2020bioRxiv25 citations Open access
Semantic Scholar
Genome features of common vetch ( Vicia sativa ) in natural habitats
K. Shirasawa, Shunichi Kosugi, K. Sasaki, A. Ghelfi +4 more
2021bioRxiv24 citations Open access
Semantic Scholar
Strawberry fruit shape: quantification by image analysis and QTL detection by genome-wide association analysis
Shiro Nagamatsu, M. Tsubone, Takuya Wada, K. Oku +7 more
2021Breeding Science24 citations Open access
Semantic Scholar
Genetic diversity analysis and core collection construction for Amaranthus tricolor germplasm based on genome-wide single-nucleotide polymorphisms
Ken Hoshikawa, Ya‐ping Lin, R. Schafleitner, K. Shirasawa +4 more
2022Scientia Horticulturae23 citations Open access
Semantic Scholar
Genomic Selection for F1 Hybrid Breeding in Strawberry (Fragaria × ananassa)
Eiji Yamamoto, S. Kataoka, K. Shirasawa, Y. Noguchi +1 more
2021Frontiers in Plant Science23 citations Open access
Semantic Scholar
Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids
K. Shirasawa, S. Nishio, S. Terakami, R. Botta +2 more
2021bioRxiv23 citations Open access
Semantic Scholar
Chromosome-level de novo genome assemblies of over 100 plant species
K. Shirasawa, Daijiro Harada, H. Hirakawa, S. Isobe +1 more
2021Breeding Science23 citations Open access
Semantic Scholar
Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense
K. Shirasawa, N. Kobayashi, A. Nakatsuka, H. Ohta +1 more
2021bioRxiv22 citations Open access
Semantic Scholar
Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum ‘Takanotsume’
K. Shirasawa, M. Hosokawa, Y. Yasui, A. Toyoda +1 more
2022bioRxiv20 citations Open access
Semantic Scholar
QTL analysis and GWAS of agronomic traits in sweetpotato (Ipomoea batatas L.) using genome wide SNPs
Emdadul Haque, Hiroaki Tabuchi, Y. Monden, Keisuke Suematsu +3 more
2020Breeding Science18 citations Open access
Semantic Scholar
Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data
Eiji Yamamoto, K. Shirasawa, Takumi Kimura, Y. Monden +2 more
2019bioRxiv18 citations Open access
Semantic Scholar
Haplotype-resolved de novo genome assemblies of four coniferous tree species
K. Shirasawa, Kentaro Mishima, H. Hirakawa, T. Hirao +5 more
2022bioRxiv17 citations Open access
Semantic Scholar
Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis
Amit Rai, H. Hirakawa, Megha Rai, Y. Shimizu +8 more
2022DNA Research17 citations Open access
Semantic Scholar
De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’
K. Shirasawa, H. Hirakawa, A. Azuma, F. Taniguchi +4 more
2022DNA Research17 citations Open access
Semantic Scholar
All-around 3D plant modeling system using multiple images and its composition
N. Kochi, A. Hayashi, Yota Shinohara, T. Tanabata +2 more
2022Breeding Science17 citations Open access
Semantic Scholar
The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica)
K. Shirasawa, H. Yakushiji, R. Nishimura, T. Morita +5 more
2020The Plant Journal16 citations Open access
Semantic Scholar
A chromosome-scale draft genome sequence of horsegram (Macrotyloma uniflorum)
K. Shirasawa, R. Chahota, H. Hirakawa, S. Nagano +3 more
2021bioRxiv15 citations Open access
Semantic Scholar
Genomic region associated with pod color variation in pea (Pisum sativum)
K. Shirasawa, K. Sasaki, H. Hirakawa, S. Isobe
2020bioRxiv15 citations Open access
Semantic Scholar
Construction of a framework linkage map and genetic dissection of drought- and yield-related QTLs in horsegram (Macrotyloma uniflorum)
R. Chahota, Vikas Sharma, M. Rana, Reecha Sharma +5 more
2020Euphytica15 citations
Semantic Scholar
Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species
H. Ichihara, M. Yamada, M. Kohara, H. Hirakawa +14 more
2023BMC Plant Biology14 citations Open access
Semantic Scholar
Cherry Blossom Forecast Based on Transcriptome of Floral Organs Approaching Blooming in the Flowering Cherry (Cerasus × yedoensis) Cultivar ‘Somei-Yoshino’
K. Shirasawa, T. Esumi, A. Itai, S. Isobe
2022Frontiers in Plant Science13 citations Open access
Semantic Scholar
Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
Hiroyuki Kurokochi, Naoyuki Tajima, Mitsuhiko P. Sato, K. Yoshitake +3 more
2022bioRxiv13 citations Open access
Semantic Scholar
Elucidation of drought tolerance potential of horsegram (Macrotyloma uniflorum Var.) germplasm using genome wide association studies.
Sunny Choudhary, S. Isobe, R. Chahota
2022Gene12 citations
Semantic Scholar
Gene prediction for leaf margin phenotype and fruit flesh color in pineapple (Ananas comosus) using haplotype-resolved genome sequencing.
K. Nashima, K. Shirasawa, S. Isobe, N. Urasaki +10 more
2022The Plant Journal12 citations
Semantic Scholar
Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’
K. Shirasawa, A. Itai, S. Isobe
2021bioRxiv12 citations Open access
Semantic Scholar
DNA marker for resistance to Puccinia horiana in chrysanthemum (Chrysanthemum morifolium Ramat.) “Southern Pegasus”
K. Sumitomo, K. Shirasawa, S. Isobe, H. Hirakawa +6 more
2021Breeding Science12 citations Open access
Semantic Scholar
De novo whole-genome assembly in interspecific hybrid table grape, ‘Shine Muscat’
K. Shirasawa, A. Azuma, F. Taniguchi, Toshiya Yamamoto +3 more
2019bioRxiv12 citations Open access
Semantic Scholar
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon
Mitsuhiko P. Sato, Satoshi Iwakami, Kana Fukunishi, K. Sugiura +3 more
2023bioRxiv11 citations Open access
Semantic Scholar
Chromosome-scale assembly with improved annotation provides insights into breed-wide genomic structure and diversity in domestic cats
Yuki Matsumoto, Claire Yik-Lok Chung, S. Isobe, M. Sakamoto +13 more
2024Journal of Advanced Research10 citations Open access
Semantic Scholar
A Novel Method for Quantifying Plant Morphological Characteristics Using Normal Vectors and Local Curvature Data via 3D Modelling—A Case Study in Leaf Lettuce
K. Wada, A. Hayashi, Unseok Lee, T. Tanabata +5 more
2023Italian National Conference on Sensors10 citations Open access
Semantic Scholar
Population Genomics of Peanut
R. Bhat, K. Shirasawa, Vinay Sharma, S. Isobe +5 more
202110 citations
Semantic Scholar
QTL analysis for flowering time in carnation (Dianthus caryophyllus L.)
M. Yagi, K. Shirasawa, H. Hirakawa, S. Isobe +5 more
2020Scientia Horticulturae10 citations Open access
Semantic Scholar
A genome-wide association and fine-mapping study of white rust resistance in hexaploid chrysanthemum cultivars with a wild diploid reference genome
K. Sumitomo, K. Shirasawa, S. Isobe, H. Hirakawa +7 more
2022Horticulture Research9 citations Open access
Semantic Scholar
A chromosome-scale strawberry genome assembly of a Japanese variety, Reikou
K. Shirasawa, H. Hirakawa, S. Nakayama, S. Sasamoto +9 more
2021bioRxiv9 citations Open access
Semantic Scholar
Genetic analyses of anthocyanin content using polyploid GWAS followed by QTL detection in the sweetpotato (Ipomoea batatas L.) storage root
Emdadul Haque, Eiji Yamamoto, K. Shirasawa, Hiroaki Tabuchi +3 more
2020Plant Root9 citations Open access
Semantic Scholar
Identification of QTLs for root color and carotenoid contents in Japanese orange carrot F2 populations
T. Shibaya, C. Kuroda, Hisano Tsuruoka, C. Minami +5 more
2022Scientific Reports8 citations Open access
Semantic Scholar
Haploid-resolved and chromosome-scale genome assembly in hexa-autoploid sweetpotato (Ipomoea batatas (L.) Lam)
UngHan Yoon, Q. Cao, K. Shirasawa, H. Zhai +26 more
2022bioRxiv8 citations Open access
Semantic Scholar
Development of a plant conveyance system using an AGV and a self-designed plant-handling device: A case study of DIY plant phenotyping
T. Tanabata, Kunihiro Kodama, T. Hashiguchi, D. Inomata +2 more
2022Breeding Science8 citations Open access
Semantic Scholar
Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species
K. Shirasawa, Saki Ueta, Kyoko Murakami, M. Abdelrahman +2 more
2021bioRxiv8 citations Open access
Semantic Scholar

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