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Uttiya Basu · SciRah

Researcher profile · Semantic Scholar

Uttiya Basu

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Uttiya Basu — researcher profile on SciRah

h-index: 28
Works: 75
Citations: 3,882

Most-cited papers

RNA exosome regulated long non-coding RNA transcription controls super-enhancer activity
Evangelos Pefanis, Ji-Guang Wang, Gerson Rothschild, Junghyun Lim +10 more
2015Cell445 citations Open access
Semantic Scholar
The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates
Uttiya Basu, Fei-Long Meng, Celia D Keim, V. Grinstein +11 more
2011Cell311 citations Open access
Semantic Scholar
Evolution of the immunoglobulin heavy chain class switch recombination mechanism.
J. Chaudhuri, Uttiya Basu, A. Zarrin, Catherine T. Yan +8 more
2007Advances in Immunology289 citations
Semantic Scholar
The AID antibody diversification enzyme is regulated by protein kinase A phosphorylation
Uttiya Basu, J. Chaudhuri, C. Alpert, S. Dutt +5 more
2005Nature286 citations
Semantic Scholar
Batf controls the global regulators of class switch recombination in both B and T cells
W. Ise, M. Kohyama, B. Schraml, Tingting Zhang +7 more
2011Nature Immunology210 citations Open access
Semantic Scholar
Noncoding RNA transcription targets AID to divergently transcribed loci in B cells
Evangelos Pefanis, Ji-Guang Wang, Gerson Rothschild, Junghyun Lim +4 more
2014Nature201 citations Open access
Semantic Scholar
AID in somatic hypermutation and class switch recombination.
S. Longerich, Uttiya Basu, F. Alt, U. Storb
2006Current Opinion in Immunology190 citations
Semantic Scholar
The Saccharomyces cerevisiae TIF6 Gene Encoding Translation Initiation Factor 6 Is Required for 60S Ribosomal Subunit Biogenesis
Uttiya Basu, K. Si, J. R. Warner, U. Maitra
2001Molecular and Cellular Biology185 citations Open access
Semantic Scholar
Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
Lekha R. Nair, Hachung Chung, Uttiya Basu
2020Nature reviews. Molecular cell biology179 citations Open access
Semantic Scholar
Mutations, kataegis, and translocations in B lymphocytes: towards a mechanistic understanding of AID promiscuous activity
R. Casellas, Uttiya Basu, W. Yewdell, J. Chaudhuri +2 more
2016Nature reviews. Immunology169 citations Open access
Semantic Scholar
Regulation of AID, the B-cell genome mutator.
Celia D Keim, David Kazadi, Gerson Rothschild, Uttiya Basu
2013Genes & Development133 citations Open access
Semantic Scholar
Integrity of the AID serine-38 phosphorylation site is critical for class switch recombination and somatic hypermutation in mice
Hwei-Ling Cheng, B. Vuong, Uttiya Basu, A. Franklin +7 more
2009Proceedings of the National Academy of Sciences of the United States of America115 citations Open access
Semantic Scholar
Transcriptomics identify CD9 as a marker of murine IL10-competent regulatory B cells
Jian-Bo Sun, Ji-Guang Wang, Evangelos Pefanis, Jaime L. Chao +7 more
2015Cell Reports106 citations Open access
Semantic Scholar
ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma
V. Arrieta, Andrew X. Chen, J. Kane, Seong Jae Kang +38 more
2021Nature Cancer83 citations Open access
Semantic Scholar
Expression and Function of Tetraspanins and Their Interacting Partners in B Cells
Fagui Zou, Xu Wang, Xinxin Han, Gerson Rothschild +3 more
2018Frontiers in Immunology65 citations Open access
Semantic Scholar
Nuclear Proximity of Mtr4 with RNA exosome restricts DNA mutational asymmetry
Junghyun Lim, P. Giri, David Kazadi, Brice Laffleur +14 more
2017Cell63 citations Open access
Semantic Scholar
Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells
Brice Laffleur, Junghyun Lim, Wanwei Zhang, Yiyun Chen +7 more
2021Nature Genetics62 citations Open access
Semantic Scholar
The RNA exosome syncs IAV-RNAPII transcription to promote viral ribogenesis and infectivity.
Alexander Rialdi, J. Hultquist, David Jimenez-Morales, Zuleyma Peralta +20 more
2017Cell60 citations Open access
Semantic Scholar
Evolution of Phosphorylation-Dependent Regulation of Activation Induced Cytidine Deaminase
Uttiya Basu, Yabin Wang, F. Alt
2008Molecules and Cells53 citations Open access
Semantic Scholar
Mechanism of noncoding RNA associated N6-Methyladenosine recognition by an RNA processing complex during IgH DNA recombination
Lekha R. Nair, Wanwei Zhang, Brice Laffleur, Mukesh Kumar Jha +11 more
2021Molecules and Cells52 citations Open access
Semantic Scholar
Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Integrity
Gerson Rothschild, Uttiya Basu
2017Trends in Genetics48 citations Open access
Semantic Scholar
Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression
Rebecca J. Leeman-Neill, Dong Song, Jonathan Bizarro, L. Wacheul +19 more
2023Nature Genetics44 citations Open access
Semantic Scholar
Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination
Gerson Rothschild, Wanwei Zhang, Junghyun Lim, P. Giri +10 more
2020Science immunology43 citations Open access
Semantic Scholar
The Saccharomyces cerevisiae 60 S Ribosome Biogenesis Factor Tif6p Is Regulated by Hrr25p-mediated Phosphorylation*
Partha Ray, Uttiya Basu, Anirban Ray, Romit Majumdar +2 more
2008Journal of Biological Chemistry42 citations Open access
Semantic Scholar
E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells
Jian-Bo Sun, Celia D Keim, Ji-Guang Wang, David Kazadi +3 more
2013Genes & Development37 citations Open access
Semantic Scholar
CD8+ T-cell-mediated immunoediting influences genomic evolution and immune evasion in murine gliomas
J. Kane, Junfei Zhao, Takashi Tsujiuchi, Brice Laffleur +18 more
2019Clinical Cancer Research36 citations Open access
Semantic Scholar
RNA exosome regulates AID DNA mutator activity in the B cell genome
Evangelos Pefanis, Uttiya Basu
2015Advances in Immunology32 citations Open access
Semantic Scholar
Phosphorylation of Mammalian Eukaryotic Translation Initiation Factor 6 and Its Saccharomyces cerevisiae Homologue Tif6p: Evidence that Phosphorylation of Tif6p Regulates Its Nucleocytoplasmic Distribution and Is Required for Yeast Cell Growth
Uttiya Basu, K. Si, H. Deng, U. Maitra
2003Molecular and Cellular Biology31 citations Open access
Semantic Scholar
RNA exosome drives early B cell development via non-coding RNA processing mechanisms
Brice Laffleur, Carolina Batista, Wanwei Zhang, Junghyun Lim +7 more
2022Science immunology27 citations Open access
Semantic Scholar
Biology of RNA Surveillance in Development and Disease
Brice Laffleur, Uttiya Basu
2019Trends in Cell Biology25 citations Open access
Semantic Scholar
Regulation of activation induced deaminase via phosphorylation.
Uttiya Basu, J. Chaudhuri, Ryan T. Phan, A. Datta +1 more
2007Advances in Experimental Medicine and Biology23 citations
Semantic Scholar
m6A RNA modification regulates innate lymphoid cell responses in a lineage-specific manner
Ying-Yu Zhang, Wanwei Zhang, Jingyao Zhao, Takamasa Ito +13 more
2023Nature Immunology22 citations
Semantic Scholar
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells
William K. M. Lai, Luca Mariani, Gerson Rothschild, Edwin R. Smith +21 more
2021Genome Research22 citations Open access
Semantic Scholar
Regulation of Activation-Induced Cytidine Deaminase DNA Deamination Activity in B Cells by Serine-38 Phosphorylation
Uttiya Basu, A. Franklin, B. Schwer, Hwei-Ling Cheng +2 more
2009Biochemical Society Transactions21 citations Open access
Semantic Scholar
Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation
Denis Torre, Yesai S. Fstkchyan, J. Ho, Youngseo Cheon +42 more
2023Molecules and Cells20 citations Open access
Semantic Scholar
RNA exosome and Non-coding RNA coupled mechanisms in AID mediated genomic alterations
Brice Laffleur, Uttiya Basu, Junghyun Lim
2017Journal of Molecular Biology19 citations Open access
Semantic Scholar
Transcriptional stalling in B-lymphocytes
Jian-Bo Sun, Gerson Rothschild, Evangelos Pefanis, Uttiya Basu
2013Transcription17 citations Open access
Semantic Scholar
Post-translational regulation of activation-induced cytidine deaminase
Uttiya Basu, A. Franklin, F. Alt
2009Philosophical Transactions of the Royal Society B: Biological Sciences17 citations Open access
Semantic Scholar
Post-transcriptional regulation by the exosome complex is required for cell survival and forebrain development via repression of P53 signaling
P. A. Ulmke, Yuanbin Xie, G. Sokpor, L. Phạm +8 more
2021Development16 citations Open access
Semantic Scholar
RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells
Maria Skamagki, Cheng Zhang, Christian A. Ross, A. Ananthanarayanan +7 more
2017Stem Cell Reports13 citations Open access
Semantic Scholar
Proteasomal Regulation of Mammalian SPT16 in Controlling Transcription
Amala Kaja, Abhinav Adhikari, S. Karmakar, Wanwei Zhang +5 more
2021Molecular and Cellular Biology8 citations Open access
Semantic Scholar
Effects of senataxin and RNA exosome on B-cell chromosomal integrity
David Kazadi, Junghyun Lim, Gerson Rothschild, V. Grinstein +4 more
2020Heliyon8 citations Open access
Semantic Scholar
The Common Key to Class-Switch Recombination and Somatic Hypermutation: Discovery of AID and Its Role in Antibody Gene Diversification
Rebecca J. Leeman-Neill, Junghyun Lim, Uttiya Basu
2018Journal of Immunology7 citations Open access
Semantic Scholar
Ubiquitination Events That Regulate Recombination of Immunoglobulin Loci Gene Segments
Jaime L. Chao, Gerson Rothschild, Uttiya Basu
2014Frontiers in Immunology7 citations Open access
Semantic Scholar
Somatic hypermutation mechanisms during lymphomagenesis and transformation.
Max C. Lauring, Uttiya Basu
2024Current Opinion in Genetics and Development6 citations
Semantic Scholar
Transposable element–gene chimera cartography, origination and role in enhancing transcriptome plasticity
Y. Cheon, Erik G. Alvstad, Denis Torre, D. Quach +21 more
2026Nature Structural & Molecular Biology5 citations Open access
Semantic Scholar
Malaria-Induced B Cell Genomic Instability.
Gerson Rothschild, A. Nikolai von Krusenstiern, Uttiya Basu
2015Cell5 citations Open access
Semantic Scholar
A vasculature-resident innate lymphoid cell population in mouse lungs
Simon Shirley, Hiroshi Ichise, V. Di Natale, Jia-Cheng Jin +10 more
2025Nature Communications4 citations Open access
Semantic Scholar
A ChIP-exo screen of 887 PCRP transcription factor antibodies in human cells
William K. M. Lai, Luca Mariani, Gerson Rothschild, Edwin R. Smith +21 more
2020bioRxiv4 citations Open access
Semantic Scholar
AID in non-Hodgkin B-cell lymphomas: The consequences of on- and off-target activity.
Rebecca J. Leeman-Neill, Govind Bhagat, Uttiya Basu
2024Advances in Immunology3 citations
Semantic Scholar

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Gerson Rothschild×20
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Gerson Rothschild — researcher profile on SciRah
Junghyun Lim×11
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Junghyun Lim — researcher profile on SciRah
Brice Laffleur×11
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Brice Laffleur — researcher profile on SciRah
Evangelos Pefanis×10
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Evangelos Pefanis — researcher profile on SciRah

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F. Alt — researcher profile on SciRah

Wanwei Zhang×9

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Wanwei Zhang — researcher profile on SciRah

Ji-Guang Wang×7

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Ji-Guang Wang — researcher profile on SciRah

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R. Rabadán — researcher profile on SciRah

J. Chaudhuri×6

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J. Chaudhuri — researcher profile on SciRah

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H. Deng — researcher profile on SciRah

David Kazadi×4

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David Kazadi — researcher profile on SciRah

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Jian-Bo Sun — researcher profile on SciRah