E. Merelli

Most-cited papers

Characterisation of the Idiotypic Immune Network Through Persistent Entropy
M. Rucco, F. Castiglione, E. Merelli, M. Pettini
2014European Conference on Complex Systems99 citations
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jHoles: A Tool for Understanding Biological Complex Networks via Clique Weight Rank Persistent Homology
Jacopo Binchi, E. Merelli, M. Rucco, G. Petri +1 more
2014CS2Bio61 citations Open access
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Machine learning models predicting multidrug resistant urinary tract infections using “DsaaS”
A. Mancini, Leonardo Vito, Elisa Marcelli, Marco Piangerelli +3 more
2020BMC Bioinformatics50 citations Open access
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A new topological entropy-based approach for measuring similarities among piecewise linear functions
M. Rucco, Rocio Gonzalez-Diaz, M. Jiménez, N. Atienza +4 more
2015Signal Processing42 citations Open access
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Topolnogical classifier for detecting the emergence of epileptic seizures
Marco Piangerelli, M. Rucco, L. Tesei, E. Merelli
2018BMC Research Notes36 citations Open access
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Neural hypernetwork approach for pulmonary embolism diagnosis
M. Rucco, David Sousa-Rodrigues, E. Merelli, Jeffrey H. Johnson +3 more
2014BMC Research Notes36 citations Open access
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Topological Characterization of Complex Systems: Using Persistent Entropy
E. Merelli, M. Rucco, P. Sloot, L. Tesei
2015Entropy35 citations Open access
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UvA-DARE ( Digital Academic Repository ) Topological Characterization of Complex Systems : Using Persistent Entropy
E. Merelli, M. Rucco, P. Sloot, L. Tesei
201534 citations
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Topology driven modeling: the IS metaphor
E. Merelli, M. Pettini, M. Rasetti
2014Natural Computing33 citations Open access
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Modelling osteomyelitis
Pietro Lió, Nicola Paoletti, M. A. Moni, Kathryn Atwell +2 more
2012BMC Bioinformatics32 citations Open access
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Topological classifier for detecting the emergence of epileptic seizures
Marco Piangerelli, M. Rucco, E. Merelli
2016arXiv.org29 citations
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A topological approach for multivariate time series characterization: the epileptic brain
E. Merelli, Marco Piangerelli, M. Rucco, D. Toller
2016International Conference on Bio-inspired Information and Communications Technologies28 citations Open access
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Using Topological Data Analysis for diagnosis pulmonary embolism
M. Rucco, E. Merelli, D. Herman, Devi Ramanan +4 more
201428 citations
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Agent-based models of cellular systems.
N. Cannata, F. Corradini, E. Merelli, L. Tesei
2013Methods in molecular biology28 citations
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Interoperability issues among smart home technological frameworks
L. Rossi, Alberto Belli, A. De Santis, C. Diamantini +15 more
2014IEEE/ASME International Conference on Mechatronic and Embedded Systems and Applications27 citations
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An algebraic language for RNA pseudoknots comparison
Michela Quadrini, L. Tesei, E. Merelli
2019BMC Bioinformatics26 citations Open access
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A multi-level model for self-adaptive systems
E. Merelli, Nicola Paoletti, L. Tesei
2012FOCLASA24 citations Open access
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Multilevel Computational Modeling and Quantitative Analysis of Bone Remodeling
Nicola Paoletti, Pietro Liò, E. Merelli, M. Viceconti
2012IEEE/ACM Transactions on Computational Biology & Bioinformatics23 citations
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Adaptability checking in complex systems
E. Merelli, Nicola Paoletti, L. Tesei
2016Science of Computer Programming22 citations Open access
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AAL domain ontology for event-based human activity recognition
R. Culmone, M. Falcioni, P. Giuliodori, E. Merelli +5 more
2014IEEE/ASME International Conference on Mechatronic and Embedded Systems and Applications18 citations
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ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots
Michela Quadrini, L. Tesei, E. Merelli
2020Bioinform.16 citations Open access
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Multiple Verification in Complex Biological Systems: The Bone Remodelling Case Study
E. Bartocci, Pietro Liò, E. Merelli, Nicola Paoletti
2012Trans. Comp. Sys. Biology16 citations
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Non locality, Topology, Formal languages: New Global Tools to Handle Large Data Sets
E. Merelli, M. Rasetti
2013International Conference on Conceptual Structures12 citations Open access
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Visualising 2-simplex formation in metabolic reactions.
Marco Piangerelli, S. Maestri, E. Merelli
2020Journal of Molecular Graphics and Modelling11 citations Open access
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Topological Classification of RNA Structures via Intersection Graph
Michela Quadrini, R. Culmone, E. Merelli
2017International Conference on Theory and Practice of Natural Computing11 citations Open access
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Persistent Homology Analysis of RNA
A. Mamuye, M. Rucco, L. Tesei, E. Merelli
201611 citations Open access
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Loop Grammars to Identify RNA Structural Patterns
Michela Quadrini, E. Merelli, R. Piergallini
2019Bioinformatics10 citations Open access
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X-Klaim Is Back
Lorenzo Bettini, E. Merelli, F. Tiezzi
2019Models, Languages, and Tools for Concurrent and Distributed Programming10 citations Open access
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SPRINGER PROCEEDINGS IN COMPLEXITY
S. Battiston, F. de Pellegrini, G. Caldarelli, E. Merelli
201610 citations
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Topological Field Theory of Data: Mining Data Beyond Complex Networks
M. Rasetti, E. Merelli
201610 citations
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Physio-Environmental Sensing and Live Modeling
F. Castiglione, Vanessa Diaz, A. Gaggioli, Pietro Liò +5 more
2013Interactive Journal of Medical Research10 citations Open access
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Agent-based models for detecting the driving forces of biomolecular interactions
S. Maestri, E. Merelli, M. Pettini
2021Scientific Reports9 citations Open access
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A Graph Grammar for Modelling RNA Folding
A. Mamuye, E. Merelli, L. Tesei
2016GaM9 citations Open access
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The Topological Field Theory of Data: a program towards a novel strategy for data mining through data language
M. Rasetti, E. Merelli
20159 citations Open access
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Topological classification of small DC motors
M. Rucco, E. Concettoni, C. Cristalli, Andrea Ferrante +1 more
2015International Forum on Research and Technologies for Society and Industry Leveraging a better tomorrow9 citations
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Loop-loop Interaction Metrics on RNA Secondary Structures with Pseudoknots
Michela Quadrini, E. Merelli
2018Bioinformatics8 citations Open access
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Survey of TOPDRIM Applications of Topological Data Analysis
E. Merelli, M. Rucco, L. Tesei, Marco Piangerelli +2 more
2016International Workshop on Knowledge Discovery on the Web6 citations
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Agent-Based Learning Model for the Obesity Paradox in RCC
Matteo Belenchia, Giacomo Rocchetti, S. Maestri, A. Cimadamore +3 more
2021Frontiers in Bioengineering and Biotechnology5 citations Open access
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Process calculi may reveal the equivalence lying at the heart of RNA and proteins
S. Maestri, E. Merelli
2019Scientific Reports5 citations Open access
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DISPAS: An Agent-Based Tool for the Management of Fishing Effort
P. Penna, Nicola Paoletti, G. Scarcella, L. Tesei +2 more
2013SEFM Workshops5 citations
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A data-driven clinical prediction rule for pulmonary embolism
L. Falsetti, E. Merelli, M. Rucco, C. Nitti +3 more
20134 citations
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Multiple Levels in Self-adaptive Complex Systems: A State-Based Approach
L. Tesei, E. Merelli, Nicola Paoletti
20134 citations
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UBioLab: a web-LABoratory for Ubiquitous in-silico experiments
E. Bartocci, D. Cacciagrano, M. R. Di Berardini, E. Merelli +1 more
2012Journal of Integrative Bioinformatics4 citations Open access
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Topological Interpretation of Interactive Computation
E. Merelli, A. Wasilewska
2019From Reactive Systems to Cyber-Physical Systems3 citations Open access
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Adaptability Checking in Multi-Level Complex Systems
E. Merelli, Nicola Paoletti, L. Tesei
2014arXiv.org3 citations
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RNN-based Model for Self-adaptive Systems - The Emergence of Epilepsy in the Human Brain
E. Merelli, Marco Piangerelli
2014International Joint Conference on Computational Intelligence3 citations Open access
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Sea-Scale Agent-Based Simulator of Solea solea in the Adriatic Sea
C. N. Coria, L. Tesei, G. Scarcella, T. Russo +1 more
2014SEFM Workshops3 citations
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Automatic generation of pseudoknotted RNAs taxonomy
Michela Quadrini, L. Tesei, E. Merelli
2022BMC Bioinformatics2 citations Open access
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A Persistent Entropy Automaton for the Dow Jones Stock Market
Marco Piangerelli, L. Tesei, E. Merelli
2019Fundamentals of Software Engineering2 citations Open access
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Label Core for Understanding RNA Structure
Michela Quadrini, E. Merelli, R. Piergallini
2019Computational Intelligence Methods for Bioinformatics and Biostatistics2 citations
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