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Hua-Ming Chen · SciRah

Researcher profile · Semantic Scholar

Hua-Ming Chen

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Hua-Ming Chen — researcher profile on SciRah

h-index: 33
Works: 60
Citations: 21K

Most-cited papers

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
J. Alonso, A. Stepanova, Thomas J Leisse, Christopher J. Kim +35 more
2003Science5,541 citations
Semantic Scholar
HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R. W. Schröder, P. Shinn, Hua-Ming Chen, C. Berry +2 more
2002Cell1,929 citations Open access
Semantic Scholar
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.
Xiaoyu Zhang, J. Yazaki, Ambika Sundaresan, Shawn J. Cokus +7 more
2006Cell1,828 citations Open access
Semantic Scholar
Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues.
Xinmin Zhang, D. Odom, Seung-Hoi Koo, M. Conkright +13 more
2005Proceedings of the National Academy of Sciences of the United States of America1,050 citations Open access
Semantic Scholar
Retroviral DNA Integration: ASLV, HIV, and MLV Show Distinct Target Site Preferences
R. Mitchell, B. Beitzel, Astrid R. W. Schroder, P. Shinn +4 more
2004PLoS Biology1,009 citations Open access
Semantic Scholar
Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
Kayoko Yamada, Jun-Man Lim, Joseph M. Dale, Hua-Ming Chen +66 more
2003Science957 citations
Semantic Scholar
Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network
M. Mukhtar, A. Carvunis, M. Dreze, P. Epple +30 more
2011Science814 citations Open access
Semantic Scholar
Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
Richard M. Clark, G. Schweikert, C. Toomajian, S. Ossowski +14 more
2007Science759 citations
Semantic Scholar
Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells
Wei Xie, M. Schultz, R. Lister, Z. Hou +38 more
2013Cell705 citations Open access
Semantic Scholar
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions
Taiji Kawakatsu, S. C. Huang, Florian Jupe, Eriko Sasaki +19 more
2016Cell667 citations Open access
Semantic Scholar
Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation
M. Schultz, Yu-Peng He, J. Whitaker, M. Hariharan +15 more
2015Nature655 citations Open access
Semantic Scholar
Patterns of Population Epigenomic Diversity
Robert J. Schmitz, M. Schultz, Mark A. Urich, J. Nery +7 more
2013Nature543 citations Open access
Semantic Scholar
A transcription factor hierarchy defines an environmental stress response network
Liang Song, S. Huang, Aaron Wise, R. Castanon +6 more
2016Science482 citations Open access
Semantic Scholar
A multimodal cell census and atlas of the mammalian primary motor cortex
E. Callaway, Hong-wei Dong, J. Ecker, Mike Hawrylycz +254 more
2020Nature465 citations Open access
Semantic Scholar
Applications of DNA tiling arrays for whole-genome analysis.
T. Mockler, S. Chan, Ambika Sundaresan, Hua-Ming Chen +2 more
2005Genomics415 citations
Semantic Scholar
A link between RNA metabolism and silencing affecting Arabidopsis development.
Brian D. Gregory, R. O'Malley, R. Lister, Mark A. Urich +4 more
2008Developmental Cell405 citations Open access
Semantic Scholar
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
K. N. Chang, S. Zhong, M. Weirauch, G. Hon +16 more
2013eLife398 citations Open access
Semantic Scholar
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.
Julia A Chekanova, Brian D. Gregory, S. Reverdatto, Hua-Ming Chen +11 more
2007Cell330 citations Open access
Semantic Scholar
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
A. Theologis, Joseph R. Ecker, C. Palm, Nancy A. Federspiel +85 more
2000Nature277 citations
Semantic Scholar
DNA methylation atlas of the mouse brain at single-cell resolution
Han-Qing Liu, Jing-Tian Zhou, Wei-ping Tian, Chong-Yuan Luo +25 more
2020Nature261 citations Open access
Semantic Scholar
Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid
M. Zander, Mathew G. Lewsey, Natalie M. Clark, Ling-Ling Yin +12 more
2019Nature Plants192 citations Open access
Semantic Scholar
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana
J. Borevitz, S. Hazen, T. Michael, Geoffrey P. Morris +11 more
2007Proceedings of the National Academy of Sciences of the United States of America168 citations Open access
Semantic Scholar
Analysis of the genome sequence of the ﬂowering plant Arabidopsis thaliana
The Arabidopsis, Genome Initiative, D. Magnien, D. NasserandJ. +62 more
168 citations
Semantic Scholar
The complex architecture and epigenomic impact of plant T-DNA insertions
Florian Jupe, Angeline C. Rivkin, T. Michael, M. Zander +7 more
2019PLoS Genetics152 citations Open access
Semantic Scholar
Single Cell DNA Methylation and 3D Genome Architecture in the Human Brain
Wei Tian, Jing-Tian Zhou, Anna Bartlett, Qiurui Zeng +35 more
2023Science129 citations Open access
Semantic Scholar
Spatiotemporal DNA methylome dynamics of the developing mouse fetus
Yu-Peng He, M. Hariharan, David U. Gorkin, D. Dickel +16 more
2020Nature129 citations Open access
Semantic Scholar
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
S. Hazen, F. Naef, Thomas R Quisel, J. Gendron +4 more
2009Genome Biology116 citations Open access
Semantic Scholar
PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants
B. C. Willige, M. Zander, Chan Yul Yoo, Amy Phan +8 more
2021Nature Genetics95 citations Open access
Semantic Scholar
Mapping transcription factor interactome networks using HaloTag protein arrays
J. Yazaki, M. Galli, A. Kim, K. Nito +19 more
2016Proceedings of the National Academy of Sciences of the United States of America71 citations Open access
Semantic Scholar
Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain
Han-Qing Liu, Qiurui Zeng, Jing-Tian Zhou, Anna Bartlett +30 more
2023Nature69 citations Open access
Semantic Scholar
Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain
Han-Qing Liu, Qiurui Zeng, Jing-Tian Zhou, Anna Bartlett +28 more
2023bioRxiv46 citations Open access
Semantic Scholar
Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15]
T. Mockler, S. Chan, Ambika Sundaresan, Hua-Ming Chen +2 more
200546 citations
Semantic Scholar
Epigenetic silencing of a multifunctional plant stress regulator
M. Zander, B. C. Willige, Yu-Peng He, Thu A. Nguyen +15 more
2019eLife38 citations Open access
Semantic Scholar
Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus
Yu-Peng He, M. Hariharan, David U. Gorkin, D. Dickel +14 more
2017bioRxiv22 citations Open access
Semantic Scholar
Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation
M. Schultz, Yu-Peng He, J. Whitaker, M. Hariharan +15 more
2015Nature17 citations Open access
Semantic Scholar
Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
Wei-ping Tian, Jing-Tian Zhou, Anna Bartlett, Qiurui Zeng +34 more
2022bioRxiv10 citations Open access
Semantic Scholar
Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid
M. Zander, Mathew G. Lewsey, Natalie M Clark, Ling-Ling Yin +12 more
2020Nature Plants10 citations Open access
Semantic Scholar
Cell-type-specific transposon demethylation and TAD remodeling in aging mouse brain
Qiurui Zeng, Wen-Liang Wang, Wei Tian, Amit Klein +30 more
2026Cell6 citations Open access
Semantic Scholar
Genetics and environment distinctively shape the human immune cell epigenome
Wen-Liang Wang, Manoj Hariharan, Wubin Ding, Anna Bartlett +41 more
2026Nature Genetics6 citations Open access
Semantic Scholar
Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants
B. C. Willige, M. Zander, Chan Yul Yoo, Amy Phan +8 more
2023Nature Genetics5 citations Open access
Semantic Scholar
Epigenome erosion in Alzheimer’s disease brain cells and induced neurons
Bang-An Wang, Jeffrey R. Jones, Jing-Tian Zhou, Wei Tian +20 more
2023bioRxiv4 citations Open access
Semantic Scholar
Genome Wide Patterns of Single Feature Polymorphism Diversity in Arabidopsis Thaliana
S. Hazen, J. Borevitz, T. Michael, Geoffrey P. Morris +11 more
20074 citations
Semantic Scholar
A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia
Wubin Ding, Amit Klein, Cindy Tatiana Báez-Becerra, Jon Rink +63 more
2026bioRxiv3 citations Open access
Semantic Scholar
The complex architecture of plant transgene insertions
Florian Jupe, T. Michael, Angeline C. Rivkin, M. Zander +7 more
2018bioRxiv3 citations Open access
Semantic Scholar
An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia
Wen-Jin Zhang, Wubin Ding, Kai Li, Lei Chang +25 more
2026bioRxiv2 citations Open access
Semantic Scholar
Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome
Wen-Liang Wang, Manoj Hariharan, Wubin Ding, Anna Bartlett +40 more
2023bioRxiv2 citations Open access
Semantic Scholar
PHYTOCHROME INTERACTING FACTORs Trigger Environmentally Responsive Chromatin Dynamics
B. C. Willige, M. Zander, Amy Phan, R. Garza +6 more
2019bioRxiv2 citations Open access
Semantic Scholar
DNA Methylation Dynamics of Dose-dependent Acute Exercise, Training Adaptation, and Detraining
Manoj Hariharan, Sahil S. Patel, Haili Song, Abid Rehman +15 more
2025bioRxiv1 citations Open access
Semantic Scholar
Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brain
Qiurui Zeng, Wei Tian, Amit Klein, Anna Bartlett +29 more
2025bioRxiv1 citations Open access
Semantic Scholar
Friction Anisotropy-Driven Domain Imaging on Exfoliated
M. Dreze, D. Byrdsong, A. Dricot, M. Duarte +37 more
20111 citations
Semantic Scholar

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