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J. Borevitz · SciRah

Researcher profile · Semantic Scholar

J. Borevitz

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J. Borevitz — researcher profile on SciRah

h-index: 57
Works: 149
Citations: 17K

Most-cited papers

Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines
S. Atwell, Yu S. Huang, B. Vilhjálmsson, Glenda Willems +32 more
2010Nature982 citations Open access
Semantic Scholar
Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
P. Crisp, D. Ganguly, S. Eichten, J. Borevitz +1 more
2016Science Advances657 citations Open access
Semantic Scholar
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
Matthew W. Horton, A. Hancock, Yu S. Huang, C. Toomajian +9 more
2012Nature Genetics523 citations Open access
Semantic Scholar
Genome-wide association studies in plants: the missing heritability is in the field
B. Brachi, Geoffrey P. Morris, J. Borevitz
2011Genome Biology494 citations Open access
Semantic Scholar
Increased Food and Ecosystem Security via Perennial Grains
J. Glover, J. Reganold, L. Bell, J. Borevitz +25 more
2010Science480 citations Open access
Semantic Scholar
The Scale of Population Structure in Arabidopsis thaliana
A. Platt, Matthew W. Horton, Yu S. Huang, Yan Li +19 more
2010PLoS Genetics388 citations Open access
Semantic Scholar
Natural allelic variation underlying a major fitness tradeoff in Arabidopsis thaliana
M. Todesco, Sureshkumar Balasubramanian, Tina T. Hu, M. B. Traw +15 more
2010Nature380 citations Open access
Semantic Scholar
A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1
Ivan R. Baxter, Jessica Brazelton, Danni Yu, Yu S. Huang +8 more
2010PLoS Genetics363 citations Open access
Semantic Scholar
Root Suberin Forms an Extracellular Barrier That Affects Water Relations and Mineral Nutrition in Arabidopsis
Ivan R. Baxter, P. Hosmani, A. Rus, B. Lahner +6 more
2009PLoS Genetics339 citations Open access
Semantic Scholar
A methyl transferase links the circadian clock to the regulation of alternative splicing
Sabrina E. Sanchez, E. Petrillo, E. Beckwith, Xu Zhang +13 more
2010Nature310 citations Open access
Semantic Scholar
Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana
Yan Li, Yu S. Huang, J. Bergelson, M. Nordborg +1 more
2010Proceedings of the National Academy of Sciences of the United States of America298 citations Open access
Semantic Scholar
Managed Relocation: Integrating the Scientific, Regulatory, and Ethical Challenges
M. Schwartz, J. Hellmann, J. Mclachlan, D. Sax +28 more
2012262 citations Open access
Semantic Scholar
Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
T. Stuart, S. Eichten, Jonathan Cahn, Yuliya V. Karpievitch +2 more
2016bioRxiv203 citations Open access
Semantic Scholar
A framework for incorporating evolutionary genomics into biodiversity conservation and management
A. Hoffmann, Philippa C. Griffin, S. Dillon, R. Catullo +9 more
2015Climate Change Responses191 citations Open access
Semantic Scholar
Deep phenotyping: deep learning for temporal phenotype/genotype classification
Sarah Taghavi Namin, M. Esmaeilzadeh, M. Najafi, Tim B. Brown +1 more
2017Plant Methods185 citations Open access
Semantic Scholar
Global Analysis of Allele-Specific Expression in Arabidopsis thaliana
Xu Zhang, J. Borevitz
2009Genetics163 citations Open access
Semantic Scholar
Genomic variation across landscapes: insights and applications.
J. Bragg, M. Supple, R. Andrew, J. Borevitz
2015New Phytologist151 citations
Semantic Scholar
TraitCapture: genomic and environment modelling of plant phenomic data.
Tim B. Brown, R. Cheng, Xavier Sirault, Tepsuda Rungrat +6 more
2014Current opinion in plant biology105 citations Open access
Semantic Scholar
Genetic architecture of regulatory variation in Arabidopsis thaliana.
Xu Zhang, Andrew J. Cal, J. Borevitz
2011Genome Research104 citations Open access
Semantic Scholar
Mineral-enriched biochar delivers enhanced nutrient recovery and carbon dioxide removal
W. Buss, Christian Wurzer, D. Manning, E. Rohling +2 more
2022Communications Earth & Environment103 citations Open access
Semantic Scholar
Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis[OPEN]
P. Crisp, D. Ganguly, Aaron B. Smith, Kevin D. Murray +8 more
2017The Plant Cell103 citations Open access
Semantic Scholar
Axe: rapid, competitive sequence read demultiplexing using a trie
Kevin D. Murray, J. Borevitz
2017bioRxiv79 citations Open access
Semantic Scholar
Source verification of mis-identified Arabidopsis thaliana accessions.
Alison E. Anastasio, A. Platt, Matthew W. Horton, E. Grotewold +4 more
2011The Plant Journal73 citations
Semantic Scholar
Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana
Yan Li, R. Cheng, K. Spokas, A. Palmer +1 more
2013Genetics70 citations Open access
Semantic Scholar
Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana
Xu Zhang, Ronald J. Hause, J. Borevitz
2012G3: Genes, Genomes, Genetics70 citations Open access
Semantic Scholar
High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing
Ashley W. Jones, Cynthia Torkel, David Stanley, Jamila Nasim +2 more
2021PLoS ONE69 citations Open access
Semantic Scholar
Stabilisation of soil organic matter with rock dust partially counteracted by plants
W. Buss, Heath Hasemer, Scott Ferguson, J. Borevitz
2023bioRxiv67 citations Open access
Semantic Scholar
Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change
M. Supple, J. Bragg, L. Broadhurst, A. Nicotra +5 more
2017bioRxiv66 citations Open access
Semantic Scholar
Population genomic variation reveals roles of history, adaptation, and ploidy in switchgrass
Paul P. Grabowski, Geoffrey P. Morris, M. Casler, J. Borevitz
2014Molecular Ecology51 citations Open access
Semantic Scholar
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
Kevin D. Murray, Christfried Webers, Cheng Soon Ong, J. Borevitz +1 more
2016bioRxiv50 citations Open access
Semantic Scholar
Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery
Tepsuda Rungrat, Mariam Awlia, Tim B. Brown, R. Cheng +9 more
2016The Arabidopsis Book50 citations Open access
Semantic Scholar
Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing
Traci Kantarski, S. Larson, Xiao-Fei Zhang, L. DeHaan +3 more
2016Theoretical and Applied Genetics47 citations
Semantic Scholar
Landscape drivers of genomic diversity and divergence in woodland Eucalyptus
Kevin D. Murray, Jasmine K. Janes, Ashley W. Jones, H. Bothwell +2 more
2019bioRxiv46 citations Open access
Semantic Scholar
A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation
C. Cazzonelli, Nazia Nisar, A. Roberts, Kevin D. Murray +2 more
2014Frontiers in Plant Science46 citations Open access
Semantic Scholar
Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus.
F. He, Xu Zhang, Jin-Yong Hu, F. Turck +4 more
2012Molecular biology and evolution40 citations Open access
Semantic Scholar
HOME: a histogram based machine learning approach for effective identification of differentially methylated regions
A. Srivastava, Yuliya V. Karpievitch, S. Eichten, J. Borevitz +1 more
2017BMC Bioinformatics39 citations Open access
Semantic Scholar
A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana
Tepsuda Rungrat, A. Almonte, R. Cheng, P. J. Gollan +5 more
2019bioRxiv38 citations Open access
Semantic Scholar
Species-specific basecallers improve actual accuracy of nanopore sequencing in plants
Scott Ferguson, Todd G. B. McLay, R. Andrew, J. Bruhl +3 more
2022Plant Methods36 citations Open access
Semantic Scholar
DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
S. Eichten, T. Stuart, A. Srivastava, R. Lister +1 more
2016bioRxiv36 citations Open access
Semantic Scholar
Within and between Whorls: Comparative Transcriptional Profiling of Aquilegia and Arabidopsis
Claudia Voelckel, J. Borevitz, Elena M. Kramer, S. Hodges
2010PLoS ONE30 citations Open access
Semantic Scholar
Isolation by distance and isolation by environment contribute to population differentiation in Protea repens (Proteaceae L.), a widespread South African species.
Rachel Prunier, Melis Akman, Colin T. Kremer, N. Aitken +3 more
2017American-Eurasian journal of botany29 citations Open access
Semantic Scholar
Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence
Scott Ferguson, Ashley W. Jones, K. Murray, R. Andrew +2 more
2024Genome Research27 citations Open access
Semantic Scholar
Widespread interspecific divergence in cis-regulation of transposable elements in the Arabidopsis genus.
F. He, Xu Zhang, Jin-Yong Hu, F. Turck +4 more
2012Molecular biology and evolution27 citations Open access
Semantic Scholar
Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain
Collin W. Ahrens, M. Supple, N. Aitken, D. Cantrill +2 more
2017Annals of Botany26 citations Open access
Semantic Scholar
Population and phylogenomic decomposition via genotyping‐by‐sequencing in Australian Pelargonium
A. Nicotra, Caroline Chong, J. Bragg, Chong Ren Ong +4 more
2016Molecular Ecology26 citations
Semantic Scholar
Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing
Ashley W. Jones, David Stanley, Scott Ferguson, B. Schwessinger +2 more
2023PLoS ONE25 citations Open access
Semantic Scholar
Genomic breeding for food, environment and livelihoods
J. Rivers, N. Warthmann, B. Pogson, J. Borevitz
2015Food Security25 citations Open access
Semantic Scholar
Spatial, climate and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra
Collin W. Ahrens, E. James, Adam D. Miller, Ferguson Scott +6 more
2020Molecular Ecology22 citations Open access
Semantic Scholar
Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
P. Wilson, J. Streich, Kevin D. Murray, S. Eichten +7 more
2018Genetics22 citations Open access
Semantic Scholar
Genotypic diversity effects on biomass production in native perennial bioenergy cropping systems
Geoffrey P. Morris, Zhen-Bin Hu, Paul P. Grabowski, J. Borevitz +3 more
2016Global change biology. Bioenergy22 citations Open access
Semantic Scholar

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Kevin D. Murray

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Yu S. Huang — researcher profile on SciRah

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