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M. Arnoldini · SciRah

Researcher profile · Semantic Scholar

M. Arnoldini

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M. Arnoldini — researcher profile on SciRah

h-index: 18
Works: 49
Citations: 2,510

Most-cited papers

High-avidity IgA protects the intestine by enchaining growing bacteria
K. Moor, Médéric Diard, M. E. Sellin, Boas Felmy +21 more
2017Nature409 citations
Semantic Scholar
Antagonism between Bacteriostatic and Bactericidal Antibiotics Is Prevalent
P. Ocampo, Viktória Lázár, Balázs Papp, M. Arnoldini +6 more
2014Antimicrobial Agents and Chemotherapy276 citations Open access
Semantic Scholar
The Cost of Virulence: Retarded Growth of Salmonella Typhimurium Cells Expressing Type III Secretion System 1
Alexander Sturm, Matthias Heinemann, M. Arnoldini, A. Benecke +4 more
2011PLoS Pathogens266 citations Open access
Semantic Scholar
Microbiota-derived peptide mimics drive lethal inflammatory cardiomyopathy
C. Gil-Cruz, C. Perez-Shibayama, Angelina De Martin, F. Ronchi +21 more
2019Science239 citations
Semantic Scholar
Bistable Expression of Virulence Genes in Salmonella Leads to the Formation of an Antibiotic-Tolerant Subpopulation
M. Arnoldini, I. Vizcarra, R. Peña-Miller, Nicolas Stocker +5 more
2014PLoS Biology225 citations Open access
Semantic Scholar
Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel
Jonas Cremer, Igor Segota, Chih-Yu Yang, M. Arnoldini +5 more
2016Proceedings of the National Academy of Sciences of the United States of America165 citations Open access
Semantic Scholar
Effect of water flow and chemical environment on microbiota growth and composition in the human colon
Jonas Cremer, M. Arnoldini, T. Hwa
2017Proceedings of the National Academy of Sciences of the United States of America159 citations Open access
Semantic Scholar
Escherichia coli limits Salmonella Typhimurium infections after diet-shifts and fat-mediated microbiota perturbation in mice
Sandra Y. Wotzka, M. Kreuzer, Lisa Maier, M. Arnoldini +22 more
2019Nature Microbiology131 citations Open access
Semantic Scholar
Antibiotic treatment selects for cooperative virulence of Salmonella typhimurium.
Médéric Diard, M. E. Sellin, Tamas Dolowschiak, M. Arnoldini +2 more
2014Current Biology99 citations Open access
Semantic Scholar
Bacterial growth, flow, and mixing shape human gut microbiota density and composition
M. Arnoldini, Jonas Cremer, T. Hwa
2018Gut microbes68 citations Open access
Semantic Scholar
Evolution of Stress Response in the Face of Unreliable Environmental Signals
M. Arnoldini, R. Mostowy, S. Bonhoeffer, M. Ackermann
2012PLoS Comput. Biol.65 citations Open access
Semantic Scholar
How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics
Ima Avalos Vizcarra, Vahid Hosseini, P. Kollmannsberger, S. Meier +4 more
2016Scientific Reports64 citations Open access
Semantic Scholar
Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut
Daniel Hoces, M. Arnoldini, Médéric Diard, C. Loverdo +1 more
2019Immunology52 citations Open access
Semantic Scholar
Monitoring of Dynamic Microbiological Processes Using Real-Time Flow Cytometry
M. Arnoldini, T. Heck, A. Blanco-Fernández, F. Hammes
2013PLoS ONE49 citations Open access
Semantic Scholar
Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle
Daniel Hoces, Jiayi Lan, Wenfei Sun, T. Geiser +15 more
2022PLoS Biology43 citations Open access
Semantic Scholar
A rationally designed oral vaccine induces Immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants
Médéric Diard, Erik Bakkeren, Verena Lentsch, A. Rocker +25 more
2021Nature Microbiology42 citations Open access
Semantic Scholar
Quantifying the varying harvest of fermentation products from the human gut microbiota
M. Arnoldini, Richa Sharma, Claudia Moresi, Grifin Chure +3 more
2025bioRxiv31 citations Open access
Semantic Scholar
Dynamic Modeling to Identify Mitigation Strategies for Covid-19 Pandemic
H. Gorji, M. Arnoldini, David F. Jenny, Alexandre Duc +2 more
2020medRxiv26 citations Open access
Semantic Scholar
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
Daniel Hoces, G. Greter, M. Arnoldini, Melanie L. Stäubli +12 more
2023eLife18 citations Open access
Semantic Scholar
Enabling direct microcalorimetric measurement of metabolic activity and exothermic reactions onto microfluidic platforms via heat flux sensor integration
Signe L. K. Vehusheia, C. Roman, O. Braissant, M. Arnoldini +1 more
2023Microsystems & Nanoengineering16 citations Open access
Semantic Scholar
Genetic Manipulation of Glycogen Allocation Affects Replicative Lifespan in E. coli
Alex Boehm, M. Arnoldini, T. Bergmiller, T. Röösli +2 more
2016PLoS Genetics15 citations Open access
Semantic Scholar
Non-invasive monitoring of microbiota and host metabolism using secondary electrospray ionization-mass spectrometry
Jiayi Lan, G. Greter, B. Streckenbach, Benedikt M. Wanner +3 more
2022bioRxiv14 citations Open access
Semantic Scholar
STeCC: Smart Testing with Contact Counting Enhances Covid-19 Mitigation by Bluetooth 1 App Based Contact Tracing 2
H. Gorji, M. Arnoldini, David F. Jenny, W. Hardt +1 more
20207 citations
Semantic Scholar
Dynamic modelling to identify mitigation strategies for the COVID-19 pandemic.
H. Gorji, M. Arnoldini, David F. Jenny, W. Hardt +1 more
2021Swiss medical weekly5 citations Open access
Semantic Scholar
How type 1 imbriae help Escherichia coli to evade extracellular antibiotics
I. Vizcarra, Vahid Hosseini, P. Kollmannsberger, S. Meier +4 more
20165 citations
Semantic Scholar
Targeted induction of gut-microbial metabolism acutely affects feeding patterns and clock gene expression in the host
G. Greter, Claudia Moresi, Stefanie Oswald, Alice de Wouters d'Oplinter +5 more
2026bioRxiv3 citations Open access
Semantic Scholar
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide is dependent on the resident microbiota
Daniel Hoces, G. Greter, M. Arnoldini, C. Moresi +9 more
2022bioRxiv3 citations Open access
Semantic Scholar
Smart investment of virus RNA testing resources to enhance Covid-19 mitigation
H. Gorji, M. Arnoldini, David F. Jenny, W. Hardt +1 more
2020medRxiv3 citations Open access
Semantic Scholar
Abundance-weighted pathway mapping demonstrates family-level structure of butyrate and propionate production across the human gut microbiome
Rebecca A. Christensen, Y. Wang, M. Arnoldini, Jonas Cremer
2026ISME Communications2 citations Open access
Semantic Scholar
Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions
G. Greter, Sebastian Hummel, Daria Künzli, Naomi Dünki +16 more
2025bioRxiv2 citations Open access
Semantic Scholar
Experimental In Vitro Microfluidic Calorimetric Chip Data towards the Early Detection of Infection on Implant Surfaces
Signe L. K. Vehusheia, C. Roman, M. Arnoldini, C. Hierold
2024Italian National Conference on Sensors2 citations Open access
Semantic Scholar
STeCC: Smart Testing with Contact Counting Enhances Covid-19 Mitigation by 2 Bluetooth App
H. Gorji, M. Arnoldini, David F. Jenny, Alexandre Duc +2 more
20202 citations
Semantic Scholar
Rationally designed oral vaccines can set an evolutionary trap for Salmonella Typhimurium
Médéric Diard, Erik Bakkeren, Verena Lentsch, Andrea Rocker +25 more
2019bioRxiv2 citations Open access
Semantic Scholar
Gut microbiota restricts intestinal lipid uptake via modulation of bile phosphatidylcholine metabolism in mice
Sarah Brunner, Johannes Plagge, M. Zimmermann-Kogadeeva, Marcus Höring +32 more
2026Nature Microbiology1 citations Open access
Semantic Scholar
Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions
G. Greter, Sebastian Hummel, Daria Künzli, Naomi Dünki +17 more
2026PLoS Biology1 citations Open access
Semantic Scholar
Transcriptomic profiles of single-copy marker genes enable predicting bacterial growth states in microbial communities
M. L. Staeubli, H. Ruscheweyh, G. Greter, M. Dmitrijeva +6 more
2025bioRxiv1 citations
Semantic Scholar
Nanoscale clustering by O-antigen-Secretory Immunoglobulin-A binding limits outer membrane diffusion by encaging individual Salmonella cells
Alyson M. Hockenberry, Milad Radiom, M. Arnoldini, Y. Turgay +6 more
2023bioRxiv1 citations Open access
Semantic Scholar
Circadian patterns of energy metabolism are only partially reconstituted in gnotobiotic mice
Daniel Hoces, Jiayi Lan, Wenfei Sun, T. Geiser +8 more
2021bioRxiv1 citations Open access
Semantic Scholar
How the Gut Microbiota Influences Our Health and How We Can Influence It
M. Arnoldini, Verena Lentsch, Daniela Latorre, G. Greter +4 more
2021Frontiers for Young Minds1 citations Open access
Semantic Scholar
Phenotypic heterogeneity in clonal bacterial populations
M. Arnoldini
20131 citations
Semantic Scholar
Comprehensive analysis of ammonia and biogenic amines in ecologically diverse systems with high-resolution mass spectrometry
Mateusz Fido, Elisa Cappio Barazzone, Etienne Hoesli, Jens Scheidegger +9 more
2026bioRxiv0 citations Open access
Semantic Scholar
Quantifying Chemical Fluxes Underlying Gut Microbiota–Host Interactions
Jonas Cremer, M. Arnoldini
2026bioRxiv0 citations Open access
Semantic Scholar
Interspecies interaction controls Escherichia coli growth in human gut microbiome samples
Mathilde Boumasmoud, Ricardo León-Sampedro, Vera Beusch, F. Benz +2 more
2025bioRxiv0 citations Open access
Semantic Scholar
Correction: Enabling direct microcalorimetric measurement of metabolic activity and exothermic reactions onto microfluidic platforms via heat flux sensor integration
Signe L. K. Vehusheia, C. Roman, O. Braissant, M. Arnoldini +1 more
2024Microsystems & Nanoengineering0 citations Open access
Semantic Scholar
The differing prevalences of propionate and butyrate-producing bacteria in the human gut microbiota
Rebecca A. Christensen, Y. Wang, M. Arnoldini, Jonas Cremer
2023bioRxiv0 citations Open access
Semantic Scholar
Dynamic phenotypic heterogeneity generated by delayed genetic oscillations
R. Peña-Miller, M. Arnoldini, M. Ackermann, R. Beardmore
2020bioRxiv0 citations Open access
Semantic Scholar
Why Is Measles Vaccination So Important?
E. Slack, M. Arnoldini, Daniela Latorre, Selma Aslani +11 more
2019Front. Young Minds.0 citations Open access
Semantic Scholar
Flow and active mixing have a strong impact on bacterial growth dynamics in the proximal large intestine
Jonas Cremer, Igor Segota, Chih-Yu Yang, M. Arnoldini +2 more
20160 citations
Semantic Scholar
Effect of flow and active mixing on bacterial growth in a colon-like geometry
Jonas Cremer, Igor Segota, M. Arnoldini, A. Groisman +1 more
20160 citations
Semantic Scholar

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