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R. Peña-Miller · SciRah

Researcher profile · Semantic Scholar

R. Peña-Miller

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R. Peña-Miller — researcher profile on SciRah

h-index: 19
Works: 50
Citations: 1,715

Most-cited papers

Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids
Á. S. Millán, R. Peña-Miller, M. Toll-Riera, Z. V. Halbert +3 more
2014Nature Communications255 citations Open access
Semantic Scholar
Bistable Expression of Virulence Genes in Salmonella Leads to the Formation of an Antibiotic-Tolerant Subpopulation
M. Arnoldini, I. Vizcarra, R. Peña-Miller, Nicolas Stocker +5 more
2014PLoS Biology225 citations Open access
Semantic Scholar
When the Most Potent Combination of Antibiotics Selects for the Greatest Bacterial Load: The Smile-Frown Transition
R. Peña-Miller, David Lähnemann, Gunther Jansen, A. Fuentes-Hernández +3 more
2013PLoS Biology216 citations Open access
Semantic Scholar
Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities
Aida Alonso-del Valle, Ricardo León-Sampedro, J. Rodríguez-Beltrán, J. de la Fuente +5 more
2021Nature Communications184 citations Open access
Semantic Scholar
Multicopy plasmids allow bacteria to escape from fitness trade-offs during evolutionary innovation
J. Rodríguez-Beltrán, J. Hernandez-Beltran, J. de la Fuente, J. Escudero +4 more
2018Nature Ecology & Evolution95 citations Open access
Semantic Scholar
Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages
A. Fuentes-Hernández, Jessica Plucain, Fabio Gori, R. Peña-Miller +5 more
2015PLoS Biology89 citations Open access
Semantic Scholar
Supplementary Information for Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria
Jerónimo Rodríguez-Beltrán, V. Sørum, M. Toll-Riera, Carmen Lasso de la Vega +3 more
202066 citations
Semantic Scholar
Antibiotic Cycling and Antibiotic Mixing: Which One Best Mitigates Antibiotic Resistance?
R. Beardmore, R. Peña-Miller, Fabio Gori, J. Iredell
2017Molecular biology and evolution62 citations Open access
Semantic Scholar
Genomics of Rapid Adaptation to Antibiotics: Convergent Evolution and Scalable Sequence Amplification
David Lähnemann, R. Peña-Miller, P. Rosenstiel, R. Beardmore +2 more
2014Genome Biology and Evolution50 citations Open access
Semantic Scholar
Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria
Aida Alonso-del Valle, Laura Toribio-Celestino, A. Quirant, Carles Tardío Pi +6 more
2023bioRxiv46 citations Open access
Semantic Scholar
Antibiotic cycling versus mixing: the difficulty of using mathematical models to definitively quantify their relative merits.
R. Beardmore, R. Peña-Miller
2010Mathematical biosciences and engineering : MBE44 citations Open access
Semantic Scholar
Rotating antibiotics selects optimally against antibiotic resistance, in theory.
R. Beardmore, R. Peña-Miller
2010Mathematical biosciences and engineering : MBE44 citations Open access
Semantic Scholar
Plasmid-mediated phenotypic noise leads to transient antibiotic resistance in bacteria
J. Hernandez-Beltran, J. Rodríguez-Beltrán, O. B. Aguilar-Luviano, J. Velez-Santiago +5 more
2024Nature Communications43 citations Open access
Semantic Scholar
Mathematical Models of Plasmid Population Dynamics
J. Hernández-Beltrán, Álvaro San Millán, A. Fuentes-Hernández, R. Peña-Miller
2021Frontiers in Microbiology42 citations Open access
Semantic Scholar
Evolutionary History and Strength of Selection Determine the Rate of Antibiotic Resistance Adaptation
Sandra Cisneros-Mayoral, Lucía Graña-Miraglia, Deyanira Pérez-Morales, R. Peña-Miller +1 more
2022Molecular biology and evolution31 citations Open access
Semantic Scholar
Single-cell time-lapse analysis of depletion of the universally conserved essential protein YgjD
T. Bergmiller, R. Peña-Miller, A. Boehm, M. Ackermann
2011BMC Microbiology28 citations Open access
Semantic Scholar
Selecting Against Antibiotic-Resistant Pathogens: Optimal Treatments in the Presence of Commensal Bacteria
R. Peña-Miller, David Lähnemann, H. Schulenburg, M. Ackermann +1 more
2012Bulletin of Mathematical Biology23 citations
Semantic Scholar
The optimal deployment of synergistic antibiotics: a control-theoretic approach
R. Peña-Miller, David Lähnemann, H. Schulenburg, M. Ackermann +1 more
2012Journal of the Royal Society Interface23 citations Open access
Semantic Scholar
Evaluating the effect of horizontal transmission on the stability of plasmids under different selection regimes
R. Peña-Miller, R. Rodríguez-González, R. MacLean, Álvaro San Millán
2015Mobile Genetic Elements20 citations Open access
Semantic Scholar
The distribution of plasmid fitness effects explains plasmid persistence in bacterial communities
Aida Alonso-del Valle, Ricardo León-Sampedro, J. Rodríguez-Beltrán, J. de la Fuente +5 more
2020bioRxiv15 citations Open access
Semantic Scholar
Modelling Cognitive Decline in the Hypertension in the Very Elderly Trial [HYVET] and Proposed Risk Tables for Population Use
R. Peters, N. Beckett, R. Beardmore, R. Peña-Miller +4 more
2010PLoS ONE15 citations Open access
Semantic Scholar
Identification of the Flavobacterium johnsoniae cysteate-fatty acyl transferase required for capnine synthesis and for efficient gliding motility
M. Vences-Guzmán, R. Peña-Miller, Nancy Adriana Hidalgo-Aguilar, Maritza Lorena Vences-Guzmán +2 more
2021Environmental Microbiology14 citations Open access
Semantic Scholar
Testing the optimality properties of a dual antibiotic treatment in a two-locus, two-allele model
R. Peña-Miller, A. Fuentes-Hernández, Carlos Reding, I. Gudelj +1 more
2014Journal of the Royal Society Interface14 citations Open access
Semantic Scholar
Segregational instability of multicopy plasmids: A population genetics approach
J. Hernandez-Beltran, Verónica Miró Pina, A. Siri-Jégousse, S. Palau +2 more
2022Ecology and Evolution12 citations Open access
Semantic Scholar
Diffusion-driven enhancement of the antibiotic resistance selection window
A. Fuentes-Hernández, Anastasia Hernández-Koutoucheva, Alán F. Muñoz, Raúl Domínguez Palestino +1 more
2019Journal of the Royal Society Interface10 citations Open access
Semantic Scholar
Plasmid mutation rates scale with copy number
Paula Ramiro-Martínez, Ignacio de Quinto, Laura Jaraba-Soto, V. Lanza +4 more
2026Proceedings of the National Academy of Sciences of the United States of America8 citations Open access
Semantic Scholar
Editorial: Facing the Upcoming of Multidrug-Resistant and Extensively Drug-Resistant Bacteria: Novel Antimicrobial Therapies (NATs)
A. León-Buitimea, J. R. Morones-Ramirez, Jason H. Yang, R. Peña-Miller
2021Frontiers in Bioengineering and Biotechnology8 citations Open access
Semantic Scholar
BAFFLE: A 3D Printable Device for Macroscopic Quantification of Fluorescent Bacteria in Space and Time
Carles Tardío Pi, D. Reyes-González, Andrea Fernández-Duque, A. Fuentes-Hernández +2 more
2022Journal of Open Hardware7 citations Open access
Semantic Scholar
Quantifying plasmid dynamics using single-cell microfluidics and image bioinformatics.
J. Hernandez-Beltran, J. Rodríguez-Beltrán, Á. S. Millán, R. Peña-Miller +1 more
2020Plasmid7 citations
Semantic Scholar
Genetic dominance governs the evolution and spread of mobile genetic elements in bacteria
J. Rodríguez-Beltrán, V. Sørum, M. Toll-Riera, Carmen Lasso de la Vega +2 more
2019Proceedings of the National Academy of Sciences of the United States of America7 citations Open access
Semantic Scholar
Canonical Host-Pathogen Trade-Offs Subverted by Mutations with Dual Benefits
R. Beardmore, Mark Hewlett, R. Peña-Miller, Ivana Gudelj +1 more
2022American Naturalist4 citations Open access
Semantic Scholar
Fitness effects of antimicrobial resistance genes in changing environments
Alberto Hipólito, Lucía García-Pastor, Alexandra von Strempel, Anna S. Weiss +8 more
2026bioRxiv2 citations
Semantic Scholar
Conditional filamentation enhances bacterial survival in toxic environments
O. B. Aguilar-Luviano, F. Santos-Escobar, Santiago Orozco-Barrera, R. Peña-Miller
2025bioRxiv2 citations Open access
Semantic Scholar
Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia
D. Reyes-González, H. De Luna-Valenciano, J. Utrilla, M. Sieber +2 more
2022Royal Society Open Science2 citations Open access
Semantic Scholar
Antibiotic heteroresistance generated by multi-copy plasmids
J. Hernandez-Beltran, J. Rodríguez-Beltrán, B. Aguilar-Luviano, J. Velez-Santiago +5 more
2022bioRxiv2 citations Open access
Semantic Scholar
Plasmids promote bacterial evolution through a copy number-driven increase in mutation rate
Paula Ramiro-Martínez, Ignacio de Quinto, Laura Jaraba-Soto, V. Lanza +4 more
2025bioRxiv1 citations Open access
Semantic Scholar
Plasmid stability in fluctuating environments: population genetics of multi-copy plasmids
J. Hernández-Beltrán, V. M. Pina, Arno Siri-Jégousse, S. Palau +2 more
2022bioRxiv1 citations Open access
Semantic Scholar
Controlling the evolution of antibiotic resistance
R. Peña-Miller
20111 citations
Semantic Scholar
uvby - β photoelectric photometry of Cepheid stars
J. Pena, A. Ferro, R. Peña-Miller, M. Alvarez +7 more
20101 citations
Semantic Scholar
Beyond resistance and tolerance: rethinking evolutionary responses to antibiotics from the perspective of individual bacterial cells
R. MacLean, R. Peña-Miller
2026Nature Communications0 citations Open access
Semantic Scholar
Corrigendum to "Temporal correlations in antibiotic selection and community structure shape the stability of conjugative resistance plasmids" [Biosyst. 268 (2026) 105920].
Carles Tardío Pi, A. G. Casanova, Á. S. Millán, R. Peña-Miller
2026Bio Systems0 citations Open access
Semantic Scholar
Temporal correlations in antibiotic selection and community structure shape the stability of conjugative resistance plasmids.
Carles Tardío Pi, Adrián González Casanova, Álvaro San Millán, R. Peña-Miller
2026Bio Systems0 citations Open access
Semantic Scholar
Dormancy stabilizes non-transitive competitive dynamics
José E. Chacón, Adrián González-Casanova, Imanol Nuñez, R. Peña-Miller +2 more
20260 citations
Semantic Scholar
Stress-Induced Cooperation Promotes Tolerance in Resource-Limited Auxotrophic Microbial Consortia
D. Reyes-González, H. de Luna-Valenciano, F. Santos-Escobar, M. Rebolleda-Gómez +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
Dynamic phenotypic heterogeneity generated by delayed genetic oscillations
R. Peña-Miller, M. Arnoldini, M. Ackermann, R. Beardmore
2020bioRxiv0 citations Open access
Semantic Scholar
Canonical host-pathogen tradeoffs subverted by mutations with dual benefits
R. Beardmore, Mark Hewlett, R. Peña-Miller, Carlos Reding +2 more
2019bioRxiv0 citations Open access
Semantic Scholar
Modelling virulence and resistance in heterogeneous bacterial populations
R. Peña-Miller
20160 citations
Semantic Scholar
Selecting Against Antibiotic-Resistant Pathogens: Optimal Treatments in the Presence of Commensal Bacteria
R. Peña-Miller, David Lähnemann, H. Schulenburg, M. Ackermann +1 more
2011Bulletin of Mathematical Biology0 citations
Semantic Scholar
uvby-beta photoelectric photometry of Cepheid stars
J. Pena, A. Ferro, R. Peña-Miller, M. Álvarez +7 more
20100 citations
Semantic Scholar
INVITED AND OFFERED TALKS
J. Hiscock, D. Bockmühl, F. Cappitelli, E. Westra +175 more
0 citations
Semantic Scholar

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