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Kai Blin · SciRah

Researcher profile · Semantic Scholar

Kai Blin

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Kai Blin — researcher profile on SciRah

h-index: 33
Works: 81
Citations: 19K

Most-cited papers

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
Kai Blin, S. Shaw, Katharina Steinke, Rasmus Villebro +4 more
2019Nucleic Acids Res.2,515 citations Open access
Semantic Scholar
antiSMASH 6.0: improving cluster detection and comparison capabilities
Kai Blin, S. Shaw, Alexander M. Kloosterman, Z. Charlop-Powers +3 more
2021Nucleic Acids Res.2,271 citations Open access
Semantic Scholar
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
M. Medema, Kai Blin, Peter Cimermancic, V. D. de Jager +5 more
2011Nucleic Acids Res.1,902 citations Open access
Semantic Scholar
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
Kai Blin, S. Shaw, Hannah E. Augustijn, Zachary L. Reitz +9 more
2023Nucleic Acids Res.1,833 citations Open access
Semantic Scholar
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
T. Weber, Kai Blin, Srikanth Duddela, Daniel Krug +9 more
2015Nucleic Acids Res.1,751 citations Open access
Semantic Scholar
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
Kai Blin, Thomas Wolf, M. Chevrette, Xiao-Wen Lu +14 more
2017Nucleic Acids Res.1,102 citations Open access
Semantic Scholar
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
Kai Blin, M. Medema, Daniyal Kazempour, M. Fischbach +3 more
2013Nucleic Acids Res.831 citations Open access
Semantic Scholar
Minimum Information about a Biosynthetic Gene cluster
M. Medema, R. Kottmann, P. Yilmaz, M. Cummings +150 more
2015Nature Chemical Biology819 citations Open access
Semantic Scholar
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
Kai Blin, S. Shaw, Lisa Vader, Judit Szenei +23 more
2025Nucleic Acids Research672 citations Open access
Semantic Scholar
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
Marc Röttig, M. Medema, Kai Blin, T. Weber +2 more
2011Nucleic Acids Res.592 citations Open access
Semantic Scholar
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
S. Kautsar, Kai Blin, S. Shaw, J. Navarro-Muñoz +17 more
2019Nucleic Acids Res.547 citations Open access
Semantic Scholar
Artificial Intelligence For Natural Product Drug Discovery
M. Mullowney, Katherine R. Duncan, S. Elsayed, Neha Garg +54 more
2023Nature reviews. Drug discovery418 citations Open access
Semantic Scholar
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
B. Terlouw, Kai Blin, J. Navarro-Muñoz, Nicole E. Avalon +78 more
2022Nucleic Acids Res.387 citations Open access
Semantic Scholar
Dissemination of antibiotic resistance genes from antibiotic producers to pathogens
Xing-Lin Jiang, Mostafa M. Hashim Ellabaan, Pep Charusanti, Christian Munck +5 more
2017Nature Communications373 citations Open access
Semantic Scholar
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
S. Kautsar, Hernando G. Suarez Duran, Kai Blin, A. Osbourn +1 more
2016bioRxiv274 citations Open access
Semantic Scholar
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
Mitja M. Zdouc, Kai Blin, Nico L L Louwen, Jorge Navarro +284 more
2024Nucleic Acids Research233 citations Open access
Semantic Scholar
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
Kai Blin, M. Medema, R. Kottmann, S. Lee +1 more
2016Nucleic Acids Res.231 citations Open access
Semantic Scholar
BiG-FAM: the biosynthetic gene cluster families database
S. Kautsar, Kai Blin, S. Shaw, T. Weber +1 more
2020Nucleic Acids Res.219 citations Open access
Semantic Scholar
Ten Simple Rules for Taking Advantage of Git and GitHub
Yasset Pérez-Riverol, L. Gatto, Rui Wang, T. Sachsenberg +11 more
2014bioRxiv208 citations Open access
Semantic Scholar
Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST
Yao-Jun Tong, C. Whitford, H. Robertsen, Kai Blin +6 more
2019Proceedings of the National Academy of Sciences of the United States of America185 citations Open access
Semantic Scholar
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining
M. D. Mungan, Mohammad Alanjary, Kai Blin, T. Weber +2 more
2020Nucleic Acids Res.181 citations Open access
Semantic Scholar
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters
Kai Blin, Victória Pascal Andreu, E. L. C. de los Santos, F. Del Carratore +3 more
2018Nucleic Acids Res.175 citations Open access
Semantic Scholar
CRISPy-web: An online resource to design sgRNAs for CRISPR applications
Kai Blin, L. E. Pedersen, T. Weber, S. Lee
2016Synthetic and Systems Biotechnology174 citations Open access
Semantic Scholar
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters
Kai Blin, H. Kim, M. Medema, T. Weber
2017Briefings Bioinform.162 citations Open access
Semantic Scholar
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery
Mohammad Alanjary, B. Kronmiller, Martina Adamek, Kai Blin +4 more
2017Nucleic Acids Res.161 citations Open access
Semantic Scholar
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes
Kai Blin, S. Shaw, S. Kautsar, M. Medema +1 more
2020Nucleic Acids Res.123 citations Open access
Semantic Scholar
DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation
Kai Blin, C. Dieterich, R. Wurmus, N. Rajewsky +2 more
2014Nucleic Acids Res.113 citations Open access
Semantic Scholar
The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more
Kai Blin, S. Shaw, Marnix M. Medema, T. Weber
2023Nucleic Acids Research96 citations Open access
Semantic Scholar
CRISPR–Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes
Yao-Jun Tong, C. Whitford, Kai Blin, T. S. Jørgensen +2 more
2020Nature Protocols78 citations
Semantic Scholar
Improved Lanthipeptide Detection and Prediction for antiSMASH
Kai Blin, Daniyal Kazempour, W. Wohlleben, T. Weber
2014PLoS ONE50 citations Open access
Semantic Scholar
Disclosing the Potential of the SARP-Type Regulator PapR2 for the Activation of Antibiotic Gene Clusters in Streptomycetes
Janina Krause, Ira Handayani, Kai Blin, A. Kulik +1 more
2020Frontiers in Microbiology45 citations Open access
Semantic Scholar
A treasure trove of 1034 actinomycete genomes
T. S. Jørgensen, O. Mohite, Eva B. Sterndorff, Maria Alvarez-Arevalo +9 more
2024bioRxiv39 citations Open access
Semantic Scholar
BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
Caner Bağcı, Matin Nuhamunada, Hemant Goyat, Casimir Ladanyi +11 more
2024bioRxiv36 citations Open access
Semantic Scholar
Recent development of computational resources for new antibiotics discovery.
H. Kim, Kai Blin, Sang Yup Lee, T. Weber
2017Current Opinion in Microbiology31 citations
Semantic Scholar
ARTS-DB: a database for antibiotic resistant targets
M. D. Mungan, Kai Blin, N. Ziemert
2021Nucleic Acids Res.28 citations Open access
Semantic Scholar
Designing sgRNAs for CRISPR-BEST base editing applications with CRISPy-web 2.0
Kai Blin, S. Shaw, Yao-Jun Tong, T. Weber
2020Synthetic and Systems Biotechnology28 citations Open access
Semantic Scholar
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
C. Rückert, R. Szczepanowski, Andreas Albersmeier, A. Goesmann +7 more
2013Journal of Biotechnology26 citations
Semantic Scholar
Programmable polyketide biosynthesis platform for production of aromatic compounds in yeast
Tadas Jakočiūnas, Andreas K. Klitgaard, E. Kontou, J. B. Nielsen +13 more
2020Synthetic and Systems Biotechnology22 citations Open access
Semantic Scholar
CRISPR-Cas9 Toolkit for Actinomycete Genome Editing.
Yao-Jun Tong, H. Robertsen, Kai Blin, T. Weber +1 more
2018Methods in molecular biology22 citations
Semantic Scholar
A Regulator Based “Semi-Targeted” Approach to Activate Silent Biosynthetic Gene Clusters
Erik Mingyar, Lucas Mühling, A. Kulik, A. Winkler +6 more
2021International Journal of Molecular Sciences19 citations Open access
Semantic Scholar
A rapid, cost efficient and simple method to identify current SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene
Tue Sparholt Joergensen, Kai Blin, Franziska Kuntke, Henrik K. Salling +3 more
2021medRxiv18 citations Open access
Semantic Scholar
Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH
Rasmus Villebro, S. Shaw, Kai Blin, T. Weber
2019Journal of Industrial Microbiology & Biotechnology18 citations Open access
Semantic Scholar
Proteomic Approach to Reveal the Regulatory Function of Aconitase AcnA in Oxidative Stress Response in the Antibiotic Producer Streptomyces viridochromogenes Tü494
E. Michta, Wei Ding, Shao-Chun Zhu, Kai Blin +4 more
2014PLoS ONE17 citations Open access
Semantic Scholar
The bifunctional role of aconitase in Streptomyces viridochromogenes Tü494.
E. Michta, Klaus Schad, Kai Blin, Regina Ort-Winklbauer +5 more
2012Environmental Microbiology17 citations
Semantic Scholar
The antiSMASH database version 5
Kai Blin, S. Shaw, Marnix M. Medema, T. Weber
2025Nucleic Acids Research14 citations
Semantic Scholar
Discovery and Characterization of Epemicins A and B, New 30-Membered Macrolides from Kutzneria sp. CA-103260.
E. Kontou, T. Gren, Francisco Javier Ortíz-López, Emil Thomsen +10 more
2021ACS Chemical Biology14 citations
Semantic Scholar
MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis
Adriano Rutz, Daniel Probst, César Aguilar, Daniel Y Akiyama +46 more
2025Nucleic Acids Research12 citations Open access
Semantic Scholar
Identification of the Biosynthetic Gene Cluster for Pyracrimycin A, an Antibiotic Produced by Streptomyces sp.
J. B. Nielsen, T. Gren, Omkar S Mohite, T. S. Jørgensen +10 more
2022ACS Chemical Biology9 citations
Semantic Scholar
Genome-Led Discovery of the Antibacterial Cyclic Lipopeptide Kutzneridine A and Its Silent Biosynthetic Gene Cluster from Kutzneria Species.
Francisco Javier Ortíz-López, D. Oves-Costales, Jaime Felipe Guerrero Garzón, T. Gren +12 more
2024Journal of Natural Products5 citations
Semantic Scholar
Discovery of gargantulides B and C, new 52-membered macrolactones from Amycolatopsis sp. Complete absolute stereochemistry of the gargantulide family
Daniel Carretero-Molina, Francisco Javier Ortíz-López, T. Gren, D. Oves-Costales +10 more
2022Organic Chemistry Frontiers5 citations
Semantic Scholar

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