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D. Dey · SciRah

Researcher profile · Semantic Scholar

D. Dey

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D. Dey — researcher profile on SciRah

h-index: 13
Works: 54
Citations: 639

Most-cited papers

Targeting Mycobacterium tuberculosis nucleoid-associated protein HU with structure-based inhibitors
T. Bhowmick, Soumitra S. Ghosh, Karuna Dixit, Varsha Ganesan +5 more
2014Nature Communications112 citations Open access
Semantic Scholar
Heterozygous OAS1 Gain-of-Function Variants Cause an Autoinflammatory Immunodeficiency
T. Magg, Tsubasa Okano, Lars M. Koenig, D. Boehmer +24 more
2021Science immunology62 citations Open access
Semantic Scholar
Academic Crisis During COVID 19: Online Classes, a Panacea for Imminent Doctors
S. Shetty, C. Shilpa, D. Dey, S. Kavya
2020Indian Journal of Otolaryngology and Head & Neck Surgery52 citations Open access
Semantic Scholar
Structural and evolutionary analyses reveal determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF.
D. Dey, V. Nagaraja, S. Ramakumar
2017Molecular Phylogenetics and Evolution42 citations
Semantic Scholar
Structural and functional diversity of Resistance-Nodulation-Division (RND) efflux pump transporters with implications for antimicrobial resistance
L. Kavanaugh, D. Dey, W. Shafer, G. Conn
2024Microbiology and Molecular Biology Reviews35 citations
Semantic Scholar
50S subunit recognition and modification by the Mycobacterium tuberculosis ribosomal RNA methyltransferase TlyA
Zane T Laughlin, S. Nandi, D. Dey, N. Zelinskaya +7 more
2021bioRxiv31 citations Open access
Semantic Scholar
Ribosome-targeting antibiotics and resistance via ribosomal RNA methylation.
Learnmore Jeremia, Benjamin E Deprez, D. Dey, G. Conn +1 more
2023RSC Medicinal Chemistry28 citations Open access
Semantic Scholar
Functionally critical residues in the aminoglycoside resistance-associated methyltransferase RmtC play distinct roles in 30S substrate recognition
M. Nosrati, D. Dey, A. Mehrani, Sarah E. Strassler +5 more
2019Journal of Biological Chemistry27 citations Open access
Semantic Scholar
Tied up in knots: Untangling substrate recognition by the SPOUT methyltransferases
Sarah E. Strassler, Isobel E. Bowles, D. Dey, J. E. Jackman +1 more
2022Journal of Biological Chemistry26 citations Open access
Semantic Scholar
Antibiotic Substrate Selectivity of Pseudomonas aeruginosa MexY and MexB Efflux Systems Is Determined by a Goldilocks Affinity
D. Dey, L. Kavanaugh, G. Conn
2020Antimicrobial Agents and Chemotherapy24 citations Open access
Semantic Scholar
30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC
P. Srinivas, M. Nosrati, N. Zelinskaya, D. Dey +3 more
2023Proceedings of the National Academy of Sciences of the United States of America18 citations Open access
Semantic Scholar
Structural Characterization of the Chlorophyllide a Oxygenase (CAO) Enzyme Through an In Silico Approach
D. Dey, R. Tanaka, H. Ito
2023Journal of Molecular Evolution15 citations Open access
Semantic Scholar
Targeted redesign of suramin analogs for novel antimicrobial lead development
D. Dey, S. Ramakumar, G. Conn
2021bioRxiv13 citations Open access
Semantic Scholar
Insights into the structure and function of the rate-limiting enzyme of chlorophyll degradation through analysis of a bacterial Mg-dechelatase homolog
D. Dey, Dipanjana Dhar, H. Fortunato, Daichi Obata +4 more
2021Computational and Structural Biotechnology Journal13 citations Open access
Semantic Scholar
Role of helical structure and dynamics in oligoadenylate synthetase 1 (OAS1) mismatch tolerance and activation by short dsRNAs
S. Schwartz, D. Dey, J. Tanquary, Camden R. Bair +2 more
2022Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
Role of Neutrophil to Lymphocyte Ratio in Predicting Severity of Obstructive Sleep Apnea
S. Shetty, Shilpa Chandrashekhar, S. K. Chaya, Adhyasha Surendran +1 more
2021Indian Journal of Otolaryngology and Head & Neck Surgery11 citations Open access
Semantic Scholar
Overproduction of the AlgT Sigma Factor Is Lethal to Mucoid Pseudomonas aeruginosa
Ashley R. Cross, V. Raghuram, Zihuan Wang, D. Dey +1 more
2020Journal of Bacteriology11 citations Open access
Semantic Scholar
Can the propensity of protein crystallization be increased by using systematic screening with metals?
R. P. Hegde, G. Pavithra, D. Dey, S. Almo +2 more
2017Protein Science11 citations Open access
Semantic Scholar
Insights into the evolution of extracellular leucine-rich repeats in metazoans with special reference to Toll-like receptor 4
Dipanjana Dhar, D. Dey, Soumalee Basu
2018bioRxiv10 citations Open access
Semantic Scholar
Insight into the adaptive evolution of mitochondrial genomes in intertidal chitons
Dipanjana Dhar, D. Dey, Soumalee Basu, H. Fortunato
20219 citations Open access
Semantic Scholar
Di-berberine conjugates as chemical probes of Pseudomonas aeruginosa MexXY-OprM efflux function and inhibition
L. Kavanaugh, A. Mahoney, D. Dey, William M. Wuest +1 more
2023bioRxiv8 citations Open access
Semantic Scholar
Vesicular Nanostructure Formation by Self-Assembly of Anisotropic Penta-phenol-Substituted Fullerene in Water.
V. Mohanta, D. Dey, S. Ramakumar, S. Patil
2015Langmuir8 citations
Semantic Scholar
Understanding the adaptive evolution of mitochondrial genomes in intertidal chitons
Dipanjana Dhar, D. Dey, Soumalee Basu, H. Fortunato
2020bioRxiv7 citations Open access
Semantic Scholar
Discovery of First-in-Class Inhibitors Targeting a Pathogen-Associated Aminoglycoside-Resistance 16S rRNA Methyltransferase
D. Dey, Benjamin E Deprez, N. Zelinskaya, J. M. Castro +2 more
2025ACS Infectious Diseases6 citations
Semantic Scholar
ISOLATION AND PHYSICO-CHEMICAL CHARACTERIZATION OF EXTRACELLULAR LIGNO-CELLULOLYTIC ENZYMES OF PLEUROTUS PULMONARIUS IN SUBMERGED FERMENTATION
N. Das, D. Dey, Sweta Mishra Post
20156 citations
Semantic Scholar
DISTANT RIBOSE 2’-O-METHYLATION OF 23S rRNA HELIX 69 PRE-ORDERS THE CAPREOMYCIN DRUG BINDING POCKET AT THE RIBOSOME SUBUNIT INTERFACE
Suparno Nandi, D. Dey, P. Srinivas, Christine M. Dunham +1 more
2024bioRxiv5 citations Open access
Semantic Scholar
Crystal structure and reaction mechanism of a bacterial Mg‐dechelatase homolog from the Chloroflexi Anaerolineae
D. Dey, Masayoshi Nishijima, R. Tanaka, G. Kurisu +2 more
2022Protein Science5 citations Open access
Semantic Scholar
Substrate recognition by the Pseudomonas aeruginosa EF-Tu–modifying methyltransferase EftM
E. Kuiper, D. Dey, Paige A. LaMore, J. Owings +3 more
2019Journal of Biological Chemistry5 citations Open access
Semantic Scholar
Revisiting the early light-induced protein hypothesis in the sustained thermal dissipation mechanism in yew leaves.
Zi-Hao Ye, Mina Sawada, Makiko Iwasa, Ryo Moriyama +10 more
2024Journal of Experimental Botany4 citations
Semantic Scholar
Distant ribose 2′-O-methylation of 23S rRNA helix 69 pre-orders the capreomycin drug binding pocket at the ribosome subunit interface
Suparno Nandi, D. Dey, P. Srinivas, Christine M. Dunham +1 more
2025Nucleic Acids Research3 citations Open access
Semantic Scholar
Structural and functional implications of leucine-rich repeats in toll-like receptor1 subfamily
D. Dey, Dipanjana Dhar, Sucharita Das, A. Maulik +1 more
2022Journal of Biosciences3 citations Open access
Semantic Scholar
Conformational heterogeneity in tails of DNA-binding proteins is augmented by proline containing repeats.
H. Khare, D. Dey, C. Madhu, Dillip K. Senapati +3 more
2017Molecular Biosystems3 citations
Semantic Scholar
In silico analysis of the C-terminal domain of big defensin from the Pacific oyster
Dipanjana Dhar, D. Dey
2022Journal of Biomolecular Structure and Dynamics2 citations
Semantic Scholar
Dilemma in diagnosing a post-auricular mass-angiolymphoid hyperplasia with eosinophilia versus Kimura’s disease, an infrequent encounter
S. Shetty, S. Chandrashekar, N. Ganesan, D. Dey +1 more
20212 citations Open access
Semantic Scholar
Phylogenetic, sequence and structural analysis of Insulin superfamily proteins reveals an indelible link between evolution and structure-function relationship
S. S., S. Kundapura, D. Dey, Ananda Kulal +1 more
20192 citations Open access
Semantic Scholar
Critical residues in the aminoglycoside-resistance 16S rRNA (m7G1405) methyltransferase RmtC play distinct roles in 30S substrate recognition
M. Nosrati, D. Dey, A. Mehrani, Sarah E. Strassler +5 more
2019bioRxiv2 citations Open access
Semantic Scholar
Crystal Structures of Native and AdoMet Bound rRNA Methyltransferase from Sinorhizobium meliloti : Structural Insights into rRNA Recognition. Evolutionary, Structural and Functional Studies on Nucleoid-Associated Proteins HU and IHF
D. Dey
20182 citations
Semantic Scholar
Phylogenetic and structural analyses reveal the determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF
D. Dey, V. Nagaraja, S. Ramakumar
2016bioRxiv2 citations Open access
Semantic Scholar
Genomic Characterization of Antibiotic-Resistant Staphylococcus epidermidis with Observed Shifts in Optimal Temperature.
Sada M Boyd, Jonathan A Chacon-Barahona, Portia Mira, D. Dey +4 more
2024Journal of Applied Microbiology1 citations
Semantic Scholar
Comparison of Evolutionary Selection Acting on the Mitochondrial Protein-Coding Genes Between Intertidal and Deep-Sea Gastropods
Dipanjana Dhar, D. Dey
2021International Journal for Research in Applied Sciences and Biotechnology1 citations Open access
Semantic Scholar
Phylogenetic Studies and Inhibitor Design Targeting Protein Interacting Interface of Nucleoid-Associated Protein HU
D. Dey, S. Ramakumar
2020bioRxiv1 citations Open access
Semantic Scholar
Crystal Structure of AdoMet bound rRNA methyltransferase from Sinorhizobium meliloti
D. Dey, R. P. Hegde, S. Almo, S. Ramakumar +1 more
20171 citations
Semantic Scholar
Berberine dimers as chemical probes of Pseudomonas aeruginosa MexXY-OprM efflux function and inhibition
L. Kavanaugh, A. Mahoney, D. Dey, William M. Wuest +1 more
20230 citations
Semantic Scholar
517 Validation of the ‘Goldilocks binding affinity’ hypothesis for aminoglycoside recognition in the Pseudomonas aeruginosa efflux transporter MexY
L. Kavanaugh, D. Dey, G. Conn
2022Journal of Cystic Fibrosis0 citations Open access
Semantic Scholar
Role of Nucleoid Associated Protein HU in the Intercellular and Extracellular Milieu
D. Dey
20200 citations
Semantic Scholar
Ludwig's Angina: Analysing Clinical Profile and Microbiology with Antibiotic Sensitivities at a Tertiary Care Hospital.
Rakesh B. S., B. B., S. C, D. Dey +1 more
2020Egyptian Journal of Ear Nose Throat and Allied Sciences0 citations Open access
Semantic Scholar
Aminoglycoside conformation and ring substituents dictate evasion from bacterial resistance mechanisms
D. Dey, E. Hoffer, Dillion Francis, C. Dunham +1 more
2020The FASEB Journal0 citations Open access
Semantic Scholar
Title: Extended insight into the preponderance of LRRs - a docking & simulation study with members of the TLR1 subfamily
D. Dey, Dipanjana Dhar, Sucharita Das, A. Maulik +1 more
20190 citations
Semantic Scholar
Insights into the evolution of extracellular leucine-rich repeats in metazoans with special reference to Toll-like receptor 4
Dipanjana Dhar, D. Dey, Soumalee Basu
2019Journal of Biosciences0 citations Open access
Semantic Scholar
Extended insight into the preponderance of LRRs - a docking & simulation study with members of the TLR1 subfamily
D. Dey, Dipanjana Dhar, Sucharita Das, A. Maulik +1 more
2019bioRxiv0 citations Open access
Semantic Scholar

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G. Conn×13
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G. Conn — researcher profile on SciRah
Dipanjana Dhar×10
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Dipanjana Dhar — researcher profile on SciRah
S. Ramakumar×9
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Soumalee Basu×8
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L. Kavanaugh — researcher profile on SciRah

N. Zelinskaya×5

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N. Zelinskaya — researcher profile on SciRah

Graeme L. Conn×5

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Graeme L. Conn — researcher profile on SciRah

U. Ramagopal×4

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U. Ramagopal — researcher profile on SciRah

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P. Srinivas — researcher profile on SciRah

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William M. Wuest — researcher profile on SciRah

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V. Nagaraja — researcher profile on SciRah