N. Menda

Most-cited papers

1. The tomato genome sequence provides insights into fleshy fruit evolution

   Shusei Satoshi Hideki Erika Kenta Sachiko Takakazu Yasuka Sato Tabata Hirakawa Asamizu Shirasawa Isobe Kanek, Shusei Satoshi Hideki Erika Kenta Sachiko Takakazu Yasuka Sato Tabata Hirakawa Asamizu Shirasawa Isobe Kanek, Shusei Sato, S. Tabata +370 more

   2012Nature3,016 citations Open access

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2. The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

   N. Fernández-Pozo, N. Menda, Jeremy D. Edwards, S. Saha +8 more

   2014Nucleic Acids Res.640 citations Open access

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3. Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato

   N. Ori, A. Cohen, A. Etzioni, Arnon Brand +10 more

   2007Nature Genetics513 citations

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4. The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond1

   L. Mueller, T. Solow, N. Taylor, B. Skwarecki +11 more

   2005Plant Physiology488 citations Open access

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5. Abscisic acid deficiency in the tomato mutant high-pigment 3 leading to increased plastid number and higher fruit lycopene content.

   N. Galpaz, Qiang Wang, N. Menda, D. Zamir +1 more

   2008The Plant Journal366 citations Open access

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6. Overdominant quantitative trait loci for yield and fitness in tomato

   Yaniv Semel, J. Nissenbaum, N. Menda, M. Zinder +6 more

   2006Proceedings of the National Academy of Sciences of the United States of America302 citations

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7. In silico screening of a saturated mutation library of tomato.

   N. Menda, Yaniv Semel, Dror Peled, Y. Eshed +1 more

   2004The Plant Journal295 citations Open access

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8. The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

   A. Bombarely, N. Menda, I. Y. Tecle, R. Buels +6 more

   2010Nucleic Acids Res.290 citations Open access

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9. Rose scent: genomics approach to discovering novel floral fragrance-related genes.

   I. Guterman, Moshe Shalit, N. Menda, D. Piestun +13 more

   2002The Plant Cell277 citations Open access

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10. Volatile Ester Formation in Roses. Identification of an Acetyl-Coenzyme A. Geraniol/Citronellol Acetyltransferase in Developing Rose Petals1

    Moshe Shalit, I. Guterman, H. Volpin, E. Bar +8 more

    2003Plant Physiology221 citations Open access

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11. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses

    L. Cooper, R. Walls, J. Elser, M. Gandolfo +18 more

    2012Plant and Cell Physiology195 citations Open access

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12. O-Methyltransferases Involved in the Biosynthesis of Volatile Phenolic Derivatives in Rose Petals1

    N. Lavid, Ji-Hong Wang, Moshe Shalit, I. Guterman +10 more

    2002Plant Physiology179 citations Open access

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13. A Snapshot of the Emerging Tomato Genome Sequence

    L. Mueller, R. K. Lankhorst, S. Tanksley, J. Giovannoni +136 more

    2009110 citations Open access

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14. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

    L. Harper, J. Campbell, Ethalinda K. S. Cannon, Sook Jung +48 more

    2018Database J. Biol. Databases Curation91 citations Open access

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15. Trait Diversity and Potential for Selection Indices Based on Variation Among Regionally Adapted Processing Tomato Germplasm

    Heather L. Merk, Shawn C. Yarnes, A. Van Deynze, Nan-Kui Tong +6 more

    201276 citations Open access

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16. Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

    Estefanía Mata-Nicolás, J. Montero-Pau, Esther Gimeno-Páez, Victor Garcia-Carpintero +7 more

    2020Horticulture Research74 citations Open access

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17. Breedbase: a digital ecosystem for modern plant breeding

    Nicolas Morales, A. Ogbonna, Bryan J. Ellerbrock, G. Bauchet +53 more

    2022G365 citations Open access

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18. The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

    E. Arnaud, Marie-Angélique Laporte, Soonho Kim, C. Aubert +34 more

    2020Patterns65 citations Open access

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19. Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes

    E. Arnaud, L. Cooper, R. Shrestha, N. Menda +7 more

    2012International Conference on Knowledge Engineering and Ontology Development60 citations Open access

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20. Flower proteome: changes in protein spectrum during the advanced stages of rose petal development

    M. Dafny-Yelin, I. Guterman, N. Menda, M. Ovadis +7 more

    2005Planta48 citations Open access

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21. Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

    N. Menda, S. Strickler, Jeremy D. Edwards, A. Bombarely +7 more

    2014BMC Plant Biology40 citations Open access

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22. A Community-Based Annotation Framework for Linking Solanaceae Genomes with Phenomes1[C][OA]

    N. Menda, R. Buels, I. Y. Tecle, L. Mueller

    2008Plant Physiology37 citations Open access

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23. The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

    Sook Jung, N. Menda, S. Redmond, R. Buels +11 more

    2011Database J. Biol. Databases Curation34 citations Open access

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24. Flash Talk: An Ontology Approach to Comparative Phenomics in Plants

    A. Oellrich, R. Walls, Ethalinda K. S. Cannon, S. Cannon +16 more

    201532 citations

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25. Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

    S. Strickler, A. Bombarely, J. Munkvold, T. York +3 more

    2015PeerJ32 citations Open access

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26. Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato

    Jian Li, Jessica Chitwood, N. Menda, L. Mueller +1 more

    2017Theoretical and Applied Genetics30 citations

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27. The SGN comparative map viewer

    L. Mueller, A. Mills, B. Skwarecki, R. Buels +2 more

    2008Bioinform.30 citations Open access

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28. An ontology approach to comparative phenomics in plants

    A. Oellrich, R. Walls, Ethalinda K. S. Cannon, S. Cannon +16 more

    2015Plant Methods28 citations Open access

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29. solGS: a web-based tool for genomic selection

    I. Y. Tecle, Jeremy D. Edwards, N. Menda, C. Egesi +5 more

    2014BMC Bioinformatics21 citations Open access

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30. Advances in tomato research in the post-genome era

    N. Menda, S. Strickler, L. Mueller

    201321 citations Open access

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31. Rose Scent Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.005207.

    I. Guterman, Moshe Shalit, N. Menda, D. Piestun +13 more

    2002The Plant Cell Online21 citations Open access

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32. solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database

    I. Y. Tecle, N. Menda, R. Buels, E. van der Knaap +1 more

    2010BMC Bioinformatics19 citations Open access

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33. The Ontologies Community of Practice: An Initiative by the CGIAR Platform for Big Data in Agriculture

    E. Arnaud, Marie-Angélique Laporte, Soonho Kim, C. Aubert +33 more

    2020Social Science Research Network13 citations

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34. Molecular Markers to Select for the j-2–mediated Jointless Pedicel in Tomato

    Tong-Ge-On Lee, Reza Shekasteband, N. Menda, L. Mueller +1 more

    201813 citations Open access

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35. Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

    Estefanía Mata-Nicolás, J. Montero-Pau, Esther Gimeno-Páez, Victor Garcia-Carpintero +7 more

    2020Horticulture Research12 citations Open access

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36. From manual curation to visualization of gene families and networks across Solanaceae plant species

    Anuradha Pujar, N. Menda, A. Bombarely, Jeremy D. Edwards +2 more

    2013Database J. Biol. Databases Curation8 citations Open access

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37. Connecting Data for Consumer Preferences, Food Quality and Breeding in support of Market-oriented Breeding of Root, Tuber, and Banana Crops.

    E. Arnaud, N. Menda, Thierry Tran, A. Asiimwe +21 more

    2023The Journal of the Science of Food and Agriculture6 citations Open access

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38. The Evolutionary Dynamics of Genetic Mutational Load Throughout Tomato Domestication History

    Hamid Razifard, S. Visa, N. Menda, L. Mueller +3 more

    2021bioRxiv3 citations

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39. Plant Metabolic Pathways in MetaCyc and SolCyc

    Anuradha Pujar, R. Caspi, N. Menda, I. Y. Tecle +2 more

    20092 citations Open access

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40. Cassavabase (cassavabase.org): an integrated field breeding and genomics database enables accelerated genetic gain in cassava

    A. Agbona, P. Kulakow, I. Rabbi, P. Prasad +5 more

    20161 citations

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41. Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

    N. Menda, S. Strickler, Jeremy D. Edwards, A. Bombarely +7 more

    2014BMC Plant Biology1 citations Open access

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42. The SOL Genomics Network Model: Making Community Annotation Work

    N. Menda, I. Y. Tecle, Anuradha Pujar, A. Bombarely +5 more

    20091 citations Open access

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43. Erratum: Rose scent: Genomics approach to discovering novel floral fragrance-related genes (Plant Cell (2002) 14 (2325-2338))

    I. Guterman, Moshe Shalit, N. Menda, D. Piestun +13 more

    20021 citations

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44. Breedbase 2.0 - expanding the functionality for traditional breeding and transgenics

    S. K. Karaikal, Ryan Preble, David J. Waring, C. C. Simoes +16 more

    2026bioRxiv0 citations Open access

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45. Post-composing ontology terms for efficient phenotyping in plant breeding

    N. Menda, Bryan J. Ellerbrock, C. C. Simoes, S. K. Karaikal +17 more

    2025Database J. Biol. Databases Curation0 citations Open access

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46. Peer Review #2 of "Distinct gene expression and secondary metabolite profiles in suppressor of prosystemin-mediated responses2 (spr2) tomato mutants having impaired mycorrhizal colonization (v0.2)"

    K. Casarrubias-Castillo, J. Montero-Vargas, Nicole Dabdoub-González, Robert Winkler +496 more

    20200 citations Open access

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47. Crop ontology: integration of standard variables

    Léo Valette, Julian Pietragalla, Marie-Angélique Laporte, A. Afolabi +27 more

    20160 citations

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48. The Species-specific crop ontology (Generation Challenge Programme): application and integration into the reference plant trait ontology to enable data mining on phenotypes : P0937

    E. Arnaud, R. Shrestha, P. Kulakow, M. Bakare +23 more

    20130 citations

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49. From manual curation to visualization of gene families and networks across Solanaceae plant species

    Anuradha Pujar, N. Menda, A. Bombarely, Jeremy D. Edwards +2 more

    20130 citations

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50. SGN Database: From QTLs to Genomes

    I. Y. Tecle, N. Menda, R. Buels, L. Mueller

    20090 citations Open access

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