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J. Giovannoni · SciRah

Researcher profile · Semantic Scholar

J. Giovannoni

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J. Giovannoni — researcher profile on SciRah

h-index: 93
Works: 273
Citations: 37K

Most-cited papers

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases.
Yi Zheng, C. Jiao, Honghe Sun, H. Rosli +9 more
2016Molecular Plant976 citations Open access
Semantic Scholar
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Lei Gao, I. Gonda, Honghe Sun, Qiyue Ma +17 more
2019Nature Genetics571 citations
Semantic Scholar
Phytohormones in Fruit Development and Maturation.
Matthew Fenn, J. Giovannoni
2020The Plant Journal410 citations Open access
Semantic Scholar
The Epigenome and Transcriptional Dynamics of Fruit Ripening.
J. Giovannoni, C. Nguyen, Betsy Ampofo, S. Zhong +1 more
2017Annual Review of Plant Biology390 citations
Semantic Scholar
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
Pei-Tao Lu, Sheng Yu, Ning Zhu, Yun-Ru Chen +13 more
2018Nature Plants326 citations Open access
Semantic Scholar
A DEMETER-like DNA demethylase governs tomato fruit ripening
Ruie Liu, A. How-Kit, L. Stammitti, E. Teyssier +16 more
2015Proceedings of the National Academy of Sciences of the United States of America322 citations Open access
Semantic Scholar
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
Yoshihito Shinozaki, Philippe Nicolas, N. Fernández-Pozo, Qiyue Ma +15 more
2018Nature Communications311 citations Open access
Semantic Scholar
Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
Bo Zhang, D. Tieman, C. Jiao, Yi-Min Xu +4 more
2016Proceedings of the National Academy of Sciences of the United States of America296 citations Open access
Semantic Scholar
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
P. Hosmani, M. Flores-Gonzalez, H. van de Geest, F. Maumus +10 more
2019bioRxiv265 citations Open access
Semantic Scholar
An InDel in the Promoter of Al-ACTIVATED MALATE TRANSPORTER9 Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance[OPEN]
Jie Ye, X. Wang, Tixu Hu, Fengxia Zhang +8 more
2017The Plant Cell246 citations Open access
Semantic Scholar
Tomato.
E. Heuvelink, R. Okello, M. Peet, J. Giovannoni +1 more
2020The physiology of vegetable crops244 citations Open access
Semantic Scholar
Uniting Germline and Stem Cells : The Function of Piwi Proteins and the piRNA Pathway in Diverse Organisms
J. Giovannoni, J. Murray, P. Poole, P. Swanson
2015189 citations
Semantic Scholar
Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
Yi Zheng, Shan Wu, Yang Bai, Honghe Sun +25 more
2018Nucleic Acids Res.184 citations Open access
Semantic Scholar
The NAC transcription factor FaRIF controls fruit ripening in strawberry
C. Martín-Pizarro, José G. Vallarino, S. Osorio, V. Meco +11 more
2021The Plant Cell174 citations Open access
Semantic Scholar
Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
Xue-Ren Yin, Xiu-Lan Xie, Xiao-Jian Xia, Jing-Quan Yu +3 more
2016The Plant Journal170 citations Open access
Semantic Scholar
Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.
Yoshihito Shinozaki, Shuhei Hao, M. Kojima, H. Sakakibara +10 more
2015The Plant Journal155 citations Open access
Semantic Scholar
Carotenoid profiling of the leaves of selected African eggplant accessions subjected to drought stress
E. Mibei, J. Ambuko, J. Giovannoni, A. Onyango +1 more
2016Food Science & Nutrition124 citations Open access
Semantic Scholar
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
Xin Wang, Lei Gao, C. Jiao, Stefanos Stravoravdis +12 more
2020Nature Communications118 citations Open access
Semantic Scholar
Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security1[OPEN]
Tomer Elitzur, Esther Yakir, L. Quansah, Zhang-Jun Fei +4 more
2016Plant Physiology118 citations Open access
Semantic Scholar
Deciphering genetic factors that determine melon fruit‐quality traits using RNA‐Seq‐based high‐resolution QTL and eQTL mapping
N. Galpaz, I. Gonda, Doron Shem-Tov, Omer Barad +27 more
2018The Plant Journal116 citations Open access
Semantic Scholar
Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato
M. Yazdani, Zhao-Xia Sun, Hui Yuan, Shao-Hua Zeng +10 more
2018Plant Biotechnology Journal102 citations Open access
Semantic Scholar
Expansin SlExp1 and endoglucanase SlCel2 synergistically promote fruit softening and cell wall disassembly in tomato
Guan-Qing Su, Yi-Fan Lin, Chun-Feng Wang, Jiao Lu +12 more
2023The Plant Cell101 citations Open access
Semantic Scholar
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening
Yan-Na Shi, J. Vrebalov, Hui Zheng, Yi-Min Xu +13 more
2021Proceedings of the National Academy of Sciences of the United States of America97 citations Open access
Semantic Scholar
Natural genetic variation for expression of a SWEET transporter among wild species of Solanum lycopersicum (tomato) determines the hexose composition of ripening tomato fruit.
Arik Shammai, M. Petreikov, Y. Yeselson, A. Faigenboim +18 more
2018The Plant Journal94 citations
Semantic Scholar
Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection
I. Gonda, H. Ashrafi, David Lyon, S. Strickler +12 more
2019The Plant Genome86 citations Open access
Semantic Scholar
Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits
Baowen Huang, J. Routaboul, Mingchun Liu, W. Deng +10 more
2017Journal of Experimental Botany78 citations Open access
Semantic Scholar
Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato
Jie Ye, Wangfang Li, Guo Ai, Changxing Li +13 more
2019PLoS Genetics74 citations Open access
Semantic Scholar
The Tomato Expression Atlas
N. Fernández-Pozo, Yi Zheng, Stephen I. Snyder, Philippe Nicolas +6 more
2017Bioinform.71 citations Open access
Semantic Scholar
AtPDS overexpression in tomato: exposing unique patterns of carotenoid self‐regulation and an alternative strategy for the enhancement of fruit carotenoid content
R. McQuinn, Breann Wong, J. Giovannoni
2017Plant Biotechnology Journal67 citations Open access
Semantic Scholar
More than meets the eye: from carotenoid biosynthesis, to new insights into apocarotenoid signaling.
R. McQuinn, J. Giovannoni, B. Pogson
2015Current opinion in plant biology66 citations
Semantic Scholar
Differential metabolism of L-phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit.
I. Gonda, Rachel Davidovich-Rikanati, E. Bar, S. Lev +12 more
2018Phytochemistry61 citations
Semantic Scholar
Ectopic expression of miRNA172 in tomato (Solanum lycopersicum) reveals novel function in fruit development through regulation of an AP2 transcription factor
M. Chung, U. Nath, J. Vrebalov, N. Gapper +4 more
2020BMC Plant Biology59 citations Open access
Semantic Scholar
SlERF.F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor Topless and histone deacetylases to repress key ripening genes.
Heng Deng, Yao Chen, Ziyu Liu, Zhao-Qiao Liu +11 more
2022The Plant Cell57 citations Open access
Semantic Scholar
Relationships between genome methylation, levels of noncoding RNAs, mRNAs and metabolites in ripening tomato fruit.
Jin-Hua Zuo, D. Grierson, Lance Courtney, Yun-Xiang Wang +6 more
2020The Plant Journal57 citations Open access
Semantic Scholar
Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression
R. Yano, T. Ariizumi, Satoko Nonaka, Y. Kawazu +5 more
2020Communications Biology56 citations Open access
Semantic Scholar
Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality
S. Osorio, R. T. Carneiro, A. Lytovchenko, R. McQuinn +5 more
2019Plant Biotechnology Journal56 citations Open access
Semantic Scholar
Fruit carotenoid-deficient mutants in tomato reveal a function of the plastidial isopentenyl diphosphate isomerase (IDI1) in carotenoid biosynthesis.
Ilya Pankratov, R. McQuinn, J. Schwartz, E. Bar +5 more
2016The Plant Journal56 citations Open access
Semantic Scholar
Manipulation of ZDS in tomato exposes carotenoid‐ and ABA‐specific effects on fruit development and ripening
R. McQuinn, N. Gapper, A. Gray, S. Zhong +4 more
2020Plant Biotechnology Journal49 citations Open access
Semantic Scholar
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits
Shiri Freilich, S. Lev, I. Gonda, E. Reuveni +15 more
2015BMC Plant Biology48 citations Open access
Semantic Scholar
Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis
N. Gapper, M. Hertog, Jinwook Lee, D. Buchanan +10 more
2017BMC Plant Biology46 citations Open access
Semantic Scholar
Tomato Multiomics Reveals Consequences of Crop Domestication and Improvement.
J. Giovannoni
2018Cell42 citations Open access
Semantic Scholar
The Tomato Genome
M. Causse, J. Giovannoni, M. Bouzayen, M. Zouine +1 more
2016Compendium of Plant Genomes41 citations Open access
Semantic Scholar
Transmission modes affect the population structure of potato virus Y in potato
W. D. da Silva, Denis Kutnjak, Yi Xu, Yi-Min Xu +3 more
2020PLoS Pathogens40 citations Open access
Semantic Scholar
Gene expression and metabolism preceding soft scald, a chilling injury of ‘Honeycrisp’ apple fruit
R. Leisso, N. Gapper, J. Mattheis, Nathanael L. Sullivan +8 more
2016BMC Genomics39 citations Open access
Semantic Scholar
The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN.
Carolina Mazo-Molina, Samantha Mainiero, S. Hind, C. Kraus +10 more
2019Molecular Plant-Microbe Interactions38 citations Open access
Semantic Scholar
Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development
José G. Vallarino, C. Merchante, J. F. Sánchez-Sevilla, María Angels de Luis Balaguer +14 more
2019Plant Biotechnology Journal36 citations Open access
Semantic Scholar
Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL
Zhongyuan Liu, Saleh Alseekh, Y. Brotman, Yi Zheng +5 more
2016Frontiers in Plant Science35 citations Open access
Semantic Scholar
Metabolomic analyses to evaluate the effect of drought stress on selected African Eggplant accessions.
E. Mibei, W. Owino, J. Ambuko, J. Giovannoni +1 more
2018The Journal of the Science of Food and Agriculture34 citations
Semantic Scholar
Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato.
Jie Ye, Xin Wang, Wenqiang Wang, Huiyang Yu +12 more
2021Plant Physiology32 citations Open access
Semantic Scholar
Natural overexpression of CAROTENOID CLEAVAGE DIOXYGENASE 4 in tomato alters carotenoid flux.
H. Yoo, M. Chung, Hyun-Ah Lee, Soojeong Lee +3 more
2023Plant Physiology31 citations Open access
Semantic Scholar

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