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D. Darriba · SciRah

Researcher profile · Semantic Scholar

D. Darriba

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D. Darriba — researcher profile on SciRah

h-index: 14
Works: 32
Citations: 21K

Most-cited papers

jModelTest 2: more models, new heuristics and high-performance computing
D. Darriba, Guillermo L. Taboada, R. Doallo, D. Posada
2012Nature Methods12K citations Open access
Semantic Scholar
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
A. Kozlov, D. Darriba, T. Flouri, B. Morel +1 more
2018bioRxiv3,889 citations Open access
Semantic Scholar
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
D. Darriba, D. Posada, A. Kozlov, A. Stamatakis +2 more
2019bioRxiv1,878 citations Open access
Semantic Scholar
ProtTest 3: fast selection of best-t models of protein evolution
D. Darriba, Guillermo L. Taboada, David Posada
20111,649 citations
Semantic Scholar
ProtTest 3: fast selection of best-fit models of protein evolution
D. Darriba, Guillermo L. Taboada, R. Doallo, David Posada
2011Bioinform.862 citations Open access
Semantic Scholar
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
P. Barbera, A. Kozlov, L. Czech, B. Morel +3 more
2018bioRxiv587 citations Open access
Semantic Scholar
ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution
D. Darriba, Guillermo L. Taboada, R. Doallo, D. Posada
2010Euro-Par Workshops430 citations
Semantic Scholar
The Phylogenetic Likelihood Library
T. Flouri, F. Izquierdo-Carrasco, D. Darriba, A. Aberer +4 more
2014Systematic Biology191 citations Open access
Semantic Scholar
jmodeltest.org: selection of nucleotide substitution models on the cloud
Jose Manuel Santorum, D. Darriba, Guillermo L. Taboada, D. Posada
2014Bioinform.89 citations Open access
Semantic Scholar
The State of Software for Evolutionary Biology
D. Darriba, T. Flouri, A. Stamatakis
2018Molecular biology and evolution49 citations Open access
Semantic Scholar
Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system.
Nikolaos Psonis, A. Antoniou, Emmanouela Karameta, A. Leaché +11 more
2018Molecular Phylogenetics and Evolution45 citations
Semantic Scholar
Does the choice of nucleotide substitution models matter topologically?
Michael Hoff, Stefan Orf, Benedikt Riehm, D. Darriba +1 more
2016BMC Bioinformatics42 citations Open access
Semantic Scholar
Prediction of missing sequences and branch lengths in phylogenomic data
D. Darriba, M. Weiss, A. Stamatakis
2016Bioinform.33 citations Open access
Semantic Scholar
The wall lizards of the Balkan peninsula: tackling questions at the interphase of phylogenomics and population genomics.
Nikolaos Psonis, A. Antoniou, Emmanouela Karameta, D. Darriba +3 more
2021Molecular Phylogenetics and Evolution14 citations Open access
Semantic Scholar
The impact of partitioning on phylogenomic accuracy
D. Darriba, D. Posada
2015bioRxiv14 citations Open access
Semantic Scholar
Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library
D. Darriba, A. Aberer, T. Flouri, T. Heath +2 more
2013IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum13 citations Open access
Semantic Scholar
High-performance computing selection of models of DNA substitution for multicore clusters
D. Darriba, Guillermo L. Taboada, R. Doallo, D. Posada
2014The international journal of high performance computing applications8 citations Open access
Semantic Scholar
HPC selection of models of DNA substitution
D. Darriba, Guillermo L. Taboada, R. Doallo, D. Posada
2011Computational Methods in Systems Biology3 citations
Semantic Scholar
Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region.
P. Kotsakiozi, A. Antoniou, Nikolaos Psonis, K. Sagonas +9 more
2024Molecular Phylogenetics and Evolution2 citations Open access
Semantic Scholar
A Fault Tolerant Workflow for Reproducible Research
M. Rodríguez-Pascual, A. J. Rubio-Montero, R. Mayo-García, C. Kanellopoulos +3 more
20142014 Annual Global Online Conference on Information and Computer Technology2 citations
Semantic Scholar
The State of Software in Evolutionary Biology
D. Darriba, T. Flouri, A. Stamatakis
2015bioRxiv1 citations Open access
Semantic Scholar
Peer Review #2 of "Genetic diversity and structure of the noble crayfish populations in the Balkan Peninsula revealed by mitochondrial and microsatellite DNA markers (v0.1)"
R. Gross, Leona Lovrenčić, M. Jelić, F. Grandjean +259 more
20210 citations Open access
Semantic Scholar
Peer Review #2 of "Spatial and temporal dynamics of SAR11 marine bacteria across a nearshore to offshore transect in the tropical Pacific Ocean (v0.2)"
Sarah J. Tucker, K. Freel, E. Monaghan, C. Sullivan +491 more
20210 citations Open access
Semantic Scholar
Peer Review #1 of "The inconsistent microbiota of Budu, the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing (v0.1)"
Muhammad Zarul, Hanifah, Zoqratt Corresp, Han-Ming Gan +272 more
20210 citations Open access
Semantic Scholar
Peer Review #1 of "One becomes two: second species of the Euwallacea fornicatus (Coleoptera: Curculionidae: Scolytinae) species complex is established on two Hawaiian Islands (v0.1)"
Rugman-Jones Corresp, Michelle G. Au, V. Ebrahimi, A. Eskalen +110 more
20200 citations Open access
Semantic Scholar
Peer Review #2 of "The complete chloroplast genome of Fagus crenata (subgenus Fagus) and comparison with F. engleriana (subgenus Engleriana) (v0.1)"
J. Worth, Lu-Xian Liu, F. Wei, N. Tomaru +87 more
20190 citations Open access
Semantic Scholar
Peer Review #3 of "Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics (v0.2)"
Gustavo A. Bravo, A. Antonelli, C. Bacon, K. Bartoszek +496 more
20190 citations Open access
Semantic Scholar
Peer Review #1 of "Speciation among sympatric lineages in the genus Palythoa (Cnidaria: Anthozoa: Zoantharia) revealed by morphological comparison, phylogenetic analyses and investigation of spawning period (v0.1)"
M. Mizuyama, G. Masucci, Reimer Corresp, J. Reimer +152 more
20180 citations Open access
Semantic Scholar
Adapting Reproducible Research Capabilities to Resilient Distributed Calculations
M. Rodríguez-Pascual, C. Kanellopoulos, A. J. Rubio-Montero, D. Darriba +3 more
2016International Journal of Grid and High Performance Computing0 citations
Semantic Scholar
PartitionTest test suite empirical alignments
D. Darriba, D. Posada
20150 citations
Semantic Scholar
Selection of models of genomic evolution in High Performance Computing Environments
D. Darriba
20150 citations
Semantic Scholar
HPC Selection of Models of DNA Substitution for Multicore Clusters
D. Darriba, Guillermo L. Taboada, R. Doallo
20120 citations
Semantic Scholar

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