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R. Millikin · SciRah

Researcher profile · Semantic Scholar

R. Millikin

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R. Millikin — researcher profile on SciRah

h-index: 14
Works: 24
Citations: 853

Most-cited papers

Identification and Quantification of Proteoforms by Mass Spectrometry
Leah V. Schaffer, R. Millikin, Rachel M. Miller, Lissa C. Anderson +15 more
2019Proteomics171 citations Open access
Semantic Scholar
Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry
K. Srzentič, L. Fornelli, Y. O. Tsybin, J. Loo +56 more
2020Journal of the American Society for Mass Spectrometry95 citations Open access
Semantic Scholar
Ultrafast Peptide Label-Free Quantification with FlashLFQ
R. Millikin, Stefan K Solntsev, Michael R. Shortreed, L. Smith
2017Journal of Proteome Research90 citations Open access
Semantic Scholar
The Chemical Biology of Protein Hydropersulfides: Studies of a Possible Protective Function of Biological Hydropersulfide Generation
R. Millikin, C. Bianco, Corey J. White, S. Saund +8 more
2016Free Radical Biology & Medicine89 citations Open access
Semantic Scholar
Enhanced protein isoform characterization through long-read proteogenomics
Rachel M. Miller, B. Jordan, Madison M. Mehlferber, Erin D. Jeffery +12 more
2022Genome Biology81 citations Open access
Semantic Scholar
The Chemical Biology of Hydropersulfides (RSSH): Chemical Stability, Reactivity and Redox Roles
Simran S. Saund, V. Sosa, Stephanie Henriquez, Q. N. N. Nguyen +11 more
2015Archives of Biochemistry and Biophysics69 citations Open access
Semantic Scholar
Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus
Lei Lu, R. Millikin, Stefan K Solntsev, Zach Rolfs +3 more
2018Journal of Proteome Research55 citations Open access
Semantic Scholar
Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data
Rachel M. Miller, R. Millikin, Connor V Hoffmann, Stefan K Solntsev +3 more
2019Journal of Proteome Research40 citations Open access
Semantic Scholar
Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data
Leah V. Schaffer, R. Millikin, Michael R. Shortreed, M. Scalf +1 more
2020Journal of Proteome Research29 citations Open access
Semantic Scholar
Spritz: A Proteogenomic Database Engine
Anthony J. Cesnik, Rachel M. Miller, K. Ibrahim, Lei Lu +4 more
2020bioRxiv28 citations Open access
Semantic Scholar
Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database
Yunxiang Dai, Katherine E. Buxton, Leah V. Schaffer, Rachel M. Miller +5 more
2019Journal of Proteome Research20 citations Open access
Semantic Scholar
Fused in sarcoma regulates DNA replication timing and kinetics
Wei-Yan Jia, Sang Hwa Kim, M. Scalf, Peter Tonzi +7 more
2021Journal of Biological Chemistry19 citations Open access
Semantic Scholar
Enhanced Proteomic Data Analysis with MetaMorpheus
Rachel M. Miller, R. Millikin, Zach Rolfs, Michael R. Shortreed +1 more
2023Methods in molecular biology15 citations
Semantic Scholar
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform
Subina P. Mehta, Caleb W. Easterly, Ray Sajulga, R. Millikin +10 more
2020bioRxiv14 citations Open access
Semantic Scholar
A Bayesian Null Interval Hypothesis Test Controls False-Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics
R. Millikin, Michael R. Shortreed, M. Scalf, L. Smith
2020Journal of Proteome Research11 citations Open access
Semantic Scholar
Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models
R. Millikin, Kalpana Raja, John W. Steill, Cannon Lock +9 more
2023BMC Bioinformatics8 citations Open access
Semantic Scholar
A hybrid spectral library and protein sequence database search strategy for bottom-up and top-down proteomic data analysis
Yuling Dai, R. Millikin, Zach Rolfs, Michael R. Shortreed +1 more
2022Journal of Proteome Research7 citations Open access
Semantic Scholar
Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ
R. Millikin, Michael R. Shortreed, M. Scalf, L. Smith
2023Methods in molecular biology6 citations
Semantic Scholar
SKiM-GPT: combining biomedical literature-based discovery with large language model hypothesis evaluation
Jack Freeman, R. Millikin, Leo M. H. Xu, Ishaan Sharma +6 more
2025bioRxiv5 citations Open access
Semantic Scholar
An Algorithm to Improve the Speed of Semi and Non-Specific Enzyme Searches in Proteomics
Zach Rolfs, R. Millikin, L. Smith
2020Current Bioinformatics5 citations Open access
Semantic Scholar
A Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus
Michael R. Shortreed, R. Millikin, Lei Liu, Zach Rolfs +4 more
2021Journal of Proteome Research4 citations Open access
Semantic Scholar
Fused in sarcoma regulates DNA replication timing and progression
Wei-Yan Jia, M. Scalf, Peter Tonzi, R. Millikin +7 more
2020bioRxiv0 citations Open access
Semantic Scholar
Evaluation of moFF and FlashLFQ for label free peptide quantification in proteomic workflows within Galaxy-P framework.
Subina P. Mehta, Caleb W. Easterly, James E. Johnson, Bjoern Gruening +9 more
20180 citations Open access
Semantic Scholar
The Reactions of HNO With Nonheme Proteins: An Emphasis on Thiol-Containing Proteins
J. Fukuto, R. Millikin
20170 citations
Semantic Scholar

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