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Francesca Luca · SciRah

Researcher profile · Semantic Scholar

Francesca Luca

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Francesca Luca — researcher profile on SciRah

h-index: 31
Works: 87
Citations: 3,673

Most-cited papers

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.
Yohann Nédélec, Joaquín Sanz, G. Baharian, Z. Szpiech +14 more
2016Cell493 citations Open access
Semantic Scholar
Single cell transcriptional signatures of the human placenta in term and preterm parturition
R. Pique-Regi, R. Romero, Adi L. Tarca, E. Sendler +6 more
2019bioRxiv271 citations Open access
Semantic Scholar
Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization
X. Wen, R. Pique-Regi, Francesca Luca
2016bioRxiv255 citations Open access
Semantic Scholar
Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?
R. Pique-Regi, R. Romero, A. Tarca, Francesca Luca +5 more
2020bioRxiv247 citations Open access
Semantic Scholar
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
A. Pacis, L. Tailleux, Alexander M. Morin, J. Lambourne +17 more
2015bioRxiv218 citations Open access
Semantic Scholar
Efficient Integrative Multi-SNP Association Analysis using Deterministic Approximation of Posteriors
X. Wen, Ye-Ji Lee, Francesca Luca, R. Pique-Regi
2015bioRxiv172 citations Open access
Semantic Scholar
Probabilistic Colocalization of Genetic Variants from Complex and Molecular Traits: Promise and Limitations
Abhay Hukku, Milton D. Pividori, Francesca Luca, R. Pique-Regi +2 more
2020bioRxiv124 citations Open access
Semantic Scholar
High-throughput allele-specific expression across 250 environmental conditions
Gregory A. Moyerbrailean, Allison L. Richards, D. Kurtz, Cynthia A. Kalita +10 more
2016Genome Research115 citations Open access
Semantic Scholar
The Timing of Selection at the Human FOXP2 Gene
G. Coop, K. Bullaughey, Francesca Luca, M. Przeworski
2008Molecular biology and evolution108 citations Open access
Semantic Scholar
Interactions between Glucocorticoid Treatment and Cis-Regulatory Polymorphisms Contribute to Cellular Response Phenotypes
J. Maranville, Francesca Luca, Allison L. Richards, X. Wen +4 more
2011PLoS Genetics106 citations Open access
Semantic Scholar
Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene Regulation
Allison L. Richards, Amanda Muehlbauer, Adnan Alazizi, M. Burns +7 more
2017mSystems96 citations Open access
Semantic Scholar
Cross-Population Joint Analysis of eQTLs: Fine Mapping and Functional Annotation
X. Wen, Francesca Luca, R. Pique-Regi
2014bioRxiv94 citations Open access
Semantic Scholar
QuASAR: Quantitative Allele Specific Analysis of Reads
Chris T. Harvey, Gregory A. Moyerbrailean, Gordon O. Davis, X. Wen +2 more
2014bioRxiv88 citations Open access
Semantic Scholar
Functional Genomics of Host-Microbiome Interactions in Humans
Francesca Luca, S. Kupfer, D. Knights, A. Khoruts +1 more
2017Trends in Genetics78 citations Open access
Semantic Scholar
A reduced representation approach to population genetic analyses and applications to human evolution.
Francesca Luca, R. Hudson, D. Witonsky, A. Di Rienzo
2011Genome Research69 citations Open access
Semantic Scholar
PTWAS: investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis
Yuhua Zhang, Corbin Quick, K. Yu, A. Barbeira +4 more
2020Genome Biology65 citations Open access
Semantic Scholar
Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of Summary Statistics
Ye-Ji Lee, Francesca Luca, R. Pique-Regi, X. Wen
2018bioRxiv58 citations Open access
Semantic Scholar
Genotype × environment interactions in gene regulation and complex traits
Carly Boye, Shreya Nirmalan, Ali Ranjbaran, Francesca Luca
2024Nature Genetics54 citations Open access
Semantic Scholar
Dissecting human population variation in single-cell responses to SARS-CoV-2
Yann Aquino, A. Bisiaux, Zhi Li, M. O’Neill +27 more
2023Nature52 citations Open access
Semantic Scholar
Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions
Anthony S. Findley, Alan Monziani, Allison L. Richards, Katherine L. Rhodes +10 more
2021bioRxiv49 citations Open access
Semantic Scholar
Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?
Gregory A. Moyerbrailean, Cynthia A. Kalita, Chris T. Harvey, X. Wen +2 more
2016PLoS Genetics49 citations Open access
Semantic Scholar
Analyzing and Reconciling Colocalization and Transcriptome-wide Association Studies from the Perspective of Inferential Reproducibility
Abhay Hukku, M. Sampson, Francesca Luca, R. Pique-Regi +1 more
2021bioRxiv48 citations Open access
Semantic Scholar
Adaptive Variation Regulates the Expression of the Human SGK1 Gene in Response to Stress
Francesca Luca, Sonal Kashyap, C. Southard, M. Zou +3 more
2009PLoS Genetics48 citations Open access
Semantic Scholar
Environmental influences on RNA processing: biochemical, molecular and genetic regulators of cellular response
A. Pai, Francesca Luca
2018Wiley Interdisciplinary Reviews - RNA46 citations Open access
Semantic Scholar
Differentially expressed gene networks, biomarkers, long noncoding RNAs, and shared responses with cocaine identified in the midbrains of human opioid abusers
Manal H. Saad, Matthew T Rumschlag, Michael H. Guerra, Candace Savonen +7 more
2019Scientific Reports44 citations Open access
Semantic Scholar
Genetic and transcriptional analysis of human host response to healthy gut microbiota
Allison L. Richards, M. Burns, Adnan Alazizi, Luis B. Barreiro +3 more
2016mSystems43 citations Open access
Semantic Scholar
High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
Cynthia A. Kalita, Christopher D. Brown, A. Freiman, Jenna L. Isherwood +3 more
2018bioRxiv38 citations Open access
Semantic Scholar
RNA-sequencing Identifies Novel Pathways in Sarcoidosis Monocytes
J. Talreja, P. Farshi, Adnan Alazizi, Francesca Luca +2 more
2017Scientific Reports34 citations Open access
Semantic Scholar
Single nucleus transcriptomics of ventral midbrain identifies glial activation associated with chronic opioid use disorder
Julong Wei, Tova Y. Lambert, A. Valada, Nikhil C. Patel +11 more
2023Nature Communications33 citations Open access
Semantic Scholar
QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays
Cynthia A. Kalita, Gregory A. Moyerbrailean, Christopher D. Brown, X. Wen +2 more
2017bioRxiv33 citations Open access
Semantic Scholar
Environmental perturbations lead to extensive directional shifts in RNA processing
Allison L. Richards, Donovan Watza, Anthony S. Findley, Adnan Alazizi +4 more
2017bioRxiv31 citations Open access
Semantic Scholar
Analysis of transcriptional changes in the immune system associated with pubertal development in a longitudinal cohort of children with asthma
Justyna A. Resztak, Jane Choe, Shreya Nirmalan, Julong Wei +9 more
2021bioRxiv30 citations Open access
Semantic Scholar
A hypermorphic antioxidant response element is associated with increased MS4A6A expression and Alzheimer's disease
Sarah E. Lacher, Adnan Alazizi, Xu-Ting Wang, D. Bell +3 more
2017Redox Biology27 citations Open access
Semantic Scholar
Genetic, Functional and Molecular Features of Glucocorticoid Receptor Binding
Francesca Luca, J. Maranville, Allison L. Richards, D. Witonsky +2 more
2013PLoS ONE27 citations Open access
Semantic Scholar
Socioeconomic status, family negative emotional climate, and anti-inflammatory gene expression among youth with asthma
Allison K. Farrell, R. Slatcher, E. Tobin, Ledina Imami +3 more
2018Psychoneuroendocrinology26 citations Open access
Semantic Scholar
Incomplete Lineage Sorting Is Common in Extant Gibbon Genera
J. Wall, S. Kim, Francesca Luca, L. Carbone +3 more
2013PLoS ONE25 citations Open access
Semantic Scholar
Interpreting Coronary Artery Disease Risk Through Gene–Environment Interactions in Gene Regulation
Anthony S. Findley, Allison L. Richards, C. Petrini, Adnan Alazizi +8 more
2018Genetics24 citations Open access
Semantic Scholar
A high-throughput RNA-seq approach to profile transcriptional responses
Gregory A. Moyerbrailean, Gordon O. Davis, Chris T. Harvey, Donovan Watza +3 more
2015Scientific Reports24 citations Open access
Semantic Scholar
Probabilistic integration of transcriptome-wide association studies and colocalization analysis identifies key molecular pathways of complex traits
Jeffrey Okamoto, Lijia Wang, Xian-Yong Yin, Francesca Luca +5 more
2023American Journal of Human Genetics23 citations Open access
Semantic Scholar
Mothers' Attachment is Linked to their Children's Anti-Inflammatory Gene Expression via Maternal Warmth
Sarah C. E. Stanton, S. Zilioli, J. Briskin, Ledina Imami +6 more
2017Social Psychology and Personality Science22 citations Open access
Semantic Scholar
Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution
Justyna A. Resztak, Julong Wei, S. Zilioli, E. Sendler +8 more
2023Genome Research17 citations Open access
Semantic Scholar
Psychosocial experiences modulate asthma-associated genes through gene-environment interactions
Justyna A. Resztak, Allison K. Farrell, H. Mair-Meijers, Adnan Alazizi +6 more
2020bioRxiv16 citations Open access
Semantic Scholar
Interspecies variation in hominid gut microbiota controls host gene regulation
Amanda Muehlbauer, Allison L. Richards, Adnan Alazizi, M. Burns +9 more
2020bioRxiv16 citations Open access
Semantic Scholar
Self-Disclosure and Perceived Responsiveness Among Youth With Asthma: Links to Affect and Anti-Inflammatory Gene Expression
Ledina Imami, Sarah C. E. Stanton, S. Zilioli, E. Tobin +3 more
2018Personality and Social Psychology Bulletin16 citations Open access
Semantic Scholar
A signature of Neanderthal introgression on molecular mechanisms of environmental responses
Anthony S. Findley, Xin-Jun Zhang, Carly Boye, Yen-Lung Lin +5 more
2021bioRxiv13 citations Open access
Semantic Scholar
BAGSE: a Bayesian hierarchical model approach for gene set enrichment analysis
Abhay Hukku, Corbin Quick, Francesca Luca, R. Pique-Regi +1 more
2019bioRxiv13 citations Open access
Semantic Scholar
Mapping gene-environment interactions at regulatory polymorphisms Insights into mechanisms of phenotypic variation
J. Maranville, Francesca Luca, M. Stephens, A. Di Rienzo
201213 citations
Semantic Scholar
Socioeconomic status, financial stress, and glucocorticoid resistance among youth with asthma: Testing the moderation effects of maternal involvement and warmth
Yan-Ping Jiang, Allison K. Farrell, E. Tobin, H. Mair-Meijers +4 more
2021Brain, behavior, and immunity11 citations Open access
Semantic Scholar
Functional characterization of eQTLs and asthma risk loci with scATAC-seq across immune cell types and contexts
Julong Wei, Justyna A. Resztak, Ali Ranjbaran, Adnan Alazizi +6 more
2024bioRxiv9 citations Open access
Semantic Scholar
Derangement of Metabolic and Lysosomal Gene Profiles in Response to Dexamethasone Treatment in Sarcoidosis
J. Talreja, C. Bauerfeld, E. Sendler, R. Pique-Regi +2 more
2020Frontiers in Immunology9 citations Open access
Semantic Scholar

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