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F. Hamey · SciRah

Researcher profile · Semantic Scholar

F. Hamey

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F. Hamey — researcher profile on SciRah

h-index: 17
Works: 39
Citations: 3,667

Most-cited papers

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
F. Wolf, F. Hamey, Mireya Plass, Jordi Solana +5 more
2019Genome Biology1,583 citations Open access
Semantic Scholar
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation.
Sonia Nestorowa, F. Hamey, Blanca Pijuan-Sala, E. Diamanti +5 more
2016Blood701 citations Open access
Semantic Scholar
Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
F. Wolf, F. Hamey, Mireya Plass, Jordi Solana +5 more
2017bioRxiv233 citations Open access
Semantic Scholar
A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice.
J. Dahlin, F. Hamey, Blanca Pijuan-Sala, Mairi S. Shepherd +9 more
2018Blood195 citations Open access
Semantic Scholar
Heterogeneity of human lympho-myeloid progenitors at the single cell level
D. Karamitros, B. Stoilova, Zahra Aboukhalil, F. Hamey +16 more
2017Nature Immunology193 citations Open access
Semantic Scholar
Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells
I. Macaulay, V. Svensson, C. Labalette, Lauren Ferreira +4 more
2016Cell Reports172 citations Open access
Semantic Scholar
Differentiation of transplanted haematopoietic stem cells tracked by single-cell transcriptomic analysis
Fang Dong, S. Hao, Sen Zhang, Caiying Zhu +17 more
2020Nature Cell Biology110 citations Open access
Semantic Scholar
Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization
P. Roszak, Jung-ok Heo, Bernhard Blob, Koichi Toyokura +28 more
2021Science88 citations Open access
Semantic Scholar
Reconstructing blood stem cell regulatory network models from single-cell molecular profiles
F. Hamey, Sonia Nestorowa, S. Kinston, D. Kent +2 more
2017Proceedings of the National Academy of Sciences of the United States of America88 citations Open access
Semantic Scholar
Single‐cell molecular profiling provides a high‐resolution map of basophil and mast cell development
F. Hamey, W. Lau, I. Kucinski, Xiao-Nan Wang +4 more
2020Allergy. European Journal of Allergy and Clinical Immunology61 citations Open access
Semantic Scholar
Discrimination of Dormant and Active Hematopoietic Stem Cells by G0 Marker Reveals Dormancy Regulation by Cytoplasmic Calcium.
T. Fukushima, Yosuke Tanaka, F. Hamey, Chih-Hsiang Chang +16 more
2019Cell Reports40 citations Open access
Semantic Scholar
Machine learning predicts putative hematopoietic stem cells within large single-cell transcriptomics data sets
F. Hamey, B. Göttgens
2019Experimental Hematology37 citations Open access
Semantic Scholar
FisHiCal: an R package for iterative FISH-based calibration of Hi-C data
Yoli Shavit, F. Hamey, Pietro Liò
2014Bioinform.33 citations Open access
Semantic Scholar
Low-dose IL-2 reduces IL-21+ T cell frequency and induces anti-inflammatory gene expression in type 1 diabetes
Jia-Yuan Zhang, F. Hamey, D. Trzupek, M. Mickunas +11 more
2022Nature Communications32 citations Open access
Semantic Scholar
Mbd3/NuRD controls lymphoid cell fate and inhibits tumorigenesis by repressing a B cell transcriptional program
Stephen J. Loughran, F. Comoglio, F. Hamey, Alice Giustacchini +7 more
2017Journal of Experimental Medicine28 citations Open access
Semantic Scholar
Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures
Caroline A. Oedekoven, M. Belmonte, D. Bode, F. Hamey +11 more
2021Stem Cell Reports22 citations Open access
Semantic Scholar
Single-cell multi-omics analysis reveals IFN-driven alterations in T lymphocytes and natural killer cells in systemic lupus erythematosus
D. Trzupek, Mercede Lee, F. Hamey, L. Wicker +2 more
2021medRxiv19 citations Open access
Semantic Scholar
Analysis of phloem trajectory links tissue maturation to cell specialization
P. Roszak, Jung-ok Heo, Bernhard Blob, Koichi Toyokura +21 more
2021bioRxiv11 citations Open access
Semantic Scholar
A Single Cell Haematopoietic Landscape Resolves Eight Lineage Trajectories and Defects in Kit Mutant Mice
F. Hamey, J. Dahlin, F. Wolf, Blanca Pijuan-Sala +11 more
2018Experimental Hematology7 citations Open access
Semantic Scholar
Demystifying blood stem cell fates
F. Hamey, B. Göttgens
2017Nature Cell Biology6 citations Open access
Semantic Scholar
Differentiation of transplanted haematopoietic stem cells tracked by single-cell transcriptomic analysis
Fang Dong, S. Hao, Sen Zhang, Caiying Zhu +17 more
2020Nature Cell Biology3 citations Open access
Semantic Scholar
Reconstructing Gene Regulatory Networks That Control Hematopoietic Commitment.
F. Hamey, B. Göttgens
2019Methods in molecular biology3 citations Open access
Semantic Scholar
Single-cell molecular profiling provides a high-resolution map of basophil and mast cell differentiation
F. Hamey, W. Lau, I. Kucinski, Xiao-Nan Wang +4 more
2019bioRxiv2 citations Open access
Semantic Scholar
Neogenin-1: A new receptor critical for hematopoietic stem cell function
G. de Haan, Erik Zwart, B. Dethmers-Ausema, R. V. van Os +4 more
20172 citations Open access
Semantic Scholar
A NOVEL MODEL OF HUMAN LYMPHO-MYELOID PROGENITOR HIERARCHY BASED ON SINGLE CELL FUNCTIONAL AND TRANSCRIPTIONAL ANALYSIS
D. Karamitros, B. Stoilova, Zahra Aboukhalil, A. Reinisch +16 more
20172 citations
Semantic Scholar
Low-dose IL-2 reduces IL-21+ T cells and induces a long-lived anti-inflammatory gene expression signature inversely modulated in COVID-19 patients
Jia-Yuan Zhang, F. Hamey, D. Trzupek, M. Mickunas +11 more
2022medRxiv1 citations Open access
Semantic Scholar
Sorting apples from oranges in single-cell expression comparisons
F. Hamey, B. Göttgens
2018Nature Methods1 citations Open access
Semantic Scholar
Single cell assays unveil functional and transcriptional heterogeneity of human hemopoietic lympho-myeloid progenitors
B. Stoilova, D. Karamitros, Zahra Aboukhalil, A. Reinisch +16 more
20171 citations Open access
Semantic Scholar
Automated Detection of Fluorescent Probes in Molecular Imaging
F. Hamey, Yoli Shavit, Valdone Maciulyte, C. Town +2 more
2014Computational Intelligence Methods for Bioinformatics and Biostatistics1 citations
Semantic Scholar
3185 – THE HEMATOPOIETIC ECOSYSTEM IN ACUTE MYELOID LEUKEMIA
Guo-Huan Sun, Zhenyi Wang, Zining Yang, Jingjing Li +13 more
2023Experimental Hematology0 citations Open access
Semantic Scholar
Single-cell multi-omics analysis reveals IFN-driven alterations in T lymphocytes and natural killer cells in systemic lupus erythematosus [version 1; peer review: 1 approved, 2 approved with reservations]
D. Trzupek, Mercede Lee, F. Hamey, L. Wicker +2 more
20220 citations
Semantic Scholar
In this issue: Graphical abstracts
F. Hamey, W. Lau, I. Kucinski, Xiao-Nan Wang +5 more
2021Allergy. European Journal of Allergy and Clinical Immunology0 citations
Semantic Scholar
RNA-seq [version 1; peer review: awaiting peer review]
J. Ronen, A. Akalin, F. Hamey
20200 citations
Semantic Scholar
Discrimination of Dormant and Active Hematopoietic Stem Cells by G 0 Markers Reveals Dormancy Regulation by Basal Cytoplasmic Calcium
T. Fukushima, Yosuke Tanaka, F. Hamey, Chih-Hsiang Chang +16 more
2019Social Science Research Network0 citations Open access
Semantic Scholar
Charting the single-cell transcriptional landscape of haematopoiesis
F. Hamey
20190 citations
Semantic Scholar
Mbd3/NuRD-mediated chromatin remodelling controls lymphoid cell fate and inhibits tumorigenesis by opposing transcriptional pioneering during B cell programming
Stephen J. Loughran, F. Comoglio, Alice Giustacchini, Y. Errami +7 more
20170 citations Open access
Semantic Scholar
Functional and transcriptional heterogeneity of human hemopoietic lympho-myeloid progenitors at the single cell level
F. Hamey, B. Göttgens
20170 citations
Semantic Scholar
A Novel Model of Human Hemopoiesis Based on Single Cell Functional and Transcriptional Analysis of Lympho-Myeloid Progenitors
B. Stoilova, D. Karamitros, Zahra Aboukhalil, F. Hamey +16 more
20170 citations
Semantic Scholar
Resolving the cellular hierarchy of thrombocyte lineage development using single cell RNA-Seq
Iain Macauley, C. Labalette, V. Svensson, Lauren Ferreira +3 more
20170 citations Open access
Semantic Scholar

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