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M. Däumer · SciRah

Researcher profile · Semantic Scholar

M. Däumer

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M. Däumer — researcher profile on SciRah

h-index: 33
Works: 81
Citations: 3,148

Most-cited papers

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes
N. Beerenwinkel, M. Däumer, M. Oette, K. Korn +5 more
2003Nucleic Acids Res.273 citations Open access
Semantic Scholar
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
O. Zagordi, R. Klein, M. Däumer, N. Beerenwinkel
2010Nucleic Acids Research208 citations Open access
Semantic Scholar
Predicting HIV Coreceptor Usage on the Basis of Genetic and Clinical Covariates
T. Sing, Andrew J. Low, N. Beerenwinkel, Oliver Sander +7 more
2007Antiviral Therapy177 citations Open access
Semantic Scholar
Learning Multiple Evolutionary Pathways from Cross-Sectional Data
N. Beerenwinkel, J. Rahnenführer, M. Däumer, D. Hoffmann +3 more
2004J. Comput. Biol.157 citations
Semantic Scholar
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
F. Giallonardo, A. Töpfer, Mélanie Rey, Sandhya Prabhakaran +15 more
2014Nucleic Acids Research142 citations Open access
Semantic Scholar
Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 pyrosequencing
A. Cozzi-Lepri, M. Noguera-Julián, F. Di Giallonardo, R. Schuurman +19 more
2014Journal of Antimicrobial Chemotherapy124 citations Open access
Semantic Scholar
Primary HIV Drug Resistance and Efficacy of First-Line Antiretroviral Therapy Guided by Resistance Testing
M. Oette, R. Kaiser, M. Däumer, R. Petch +8 more
2006Journal of Acquired Immune Deficiency Syndromes124 citations Open access
Semantic Scholar
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance.
N. Beerenwinkel, M. Däumer, T. Sing, Jorg Rahnenfuhrer +4 more
2005Journal of Infectious Diseases109 citations Open access
Semantic Scholar
Reactivation of an occult hepatitis B virus escape mutant in an anti-HBs positive, anti-HBc negative lymphoma patient.
Sabine Awerkiew, M. Däumer, M. Reiser, U. Wend +4 more
2007Journal of Clinical Virology93 citations
Semantic Scholar
Deep Sequencing Reveals Mutagenic Effects of Ribavirin during Monotherapy of Hepatitis C Virus Genotype 1-Infected Patients
J. Dietz, Sven-Eric Schelhorn, D. Fitting, U. Mihm +11 more
2013Journal of Virology91 citations Open access
Semantic Scholar
Compensatory Mutations at the HIV Cleavage Sites P7/P1 and P1/P6-Gag in Therapy-Naive and Therapy-Experienced Patients
J. Verheyen, E. Litau, T. Sing, M. Däumer +8 more
2006Antiviral Therapy85 citations Open access
Semantic Scholar
Evolution of raltegravir resistance during therapy.
Nadine Sichtig, S. Sierra, R. Kaiser, M. Däumer +7 more
2009Journal of Antimicrobial Chemotherapy84 citations
Semantic Scholar
New findings in HCV genotype distribution in selected West European, Russian and Israeli regions.
V. Kartashev, M. Döring, L. Nieto, E. Coletta +96 more
2016Journal of Clinical Virology73 citations Open access
Semantic Scholar
Impact of Valency of a Glycoprotein B-Specific Monoclonal Antibody on Neutralization of Herpes Simplex Virus
A. Krawczyk, J. Krauss, A. Eis-Hübinger, M. Däumer +6 more
2010Journal of Virology65 citations Open access
Semantic Scholar
Read length versus Depth of Coverage for Viral Quasispecies Reconstruction
O. Zagordi, M. Däumer, C. Beisel, N. Beerenwinkel
2012PLoS ONE64 citations Open access
Semantic Scholar
Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database.
A. Altmann, M. Däumer, N. Beerenwinkel, Y. Peres +9 more
2009Journal of Infectious Diseases63 citations Open access
Semantic Scholar
Successful therapy of hepatitis B with tenofovir in HIV-infected patients failing previous adefovir and lamivudine treatment
O. Schildgen, C. Schewe, M. Vogel, M. Däumer +4 more
2004AIDS (London)63 citations Open access
Semantic Scholar
Methods for optimizing antiviral combination therapies
N. Beerenwinkel, Thomas Lengauer, M. Däumer, R. Kaiser +4 more
2003Intelligent Systems in Molecular Biology63 citations Open access
Semantic Scholar
Trends of prevalence of primary HIV drug resistance in Germany.
A. Sagir, M. Oette, R. Kaiser, M. Däumer +8 more
2007Journal of Antimicrobial Chemotherapy56 citations Open access
Semantic Scholar
Prevalence of minor variants of HIV strains at reverse transcriptase position 103 in therapy-naïve patients and their impact on the virological failure.
M. Balduin, M. Oette, M. Däumer, D. Hoffmann +2 more
2009Journal of Clinical Virology52 citations
Semantic Scholar
Rapid Rebound of a Preexisting CXCR4-tropic Human Immunodeficiency Virus Variant After Allogeneic Transplantation With CCR5 &Dgr;32 Homozygous Stem Cells
J. Verheyen, A. Thielen, N. Lübke, M. Dirks +9 more
2018Clinical Infectious Diseases50 citations Open access
Semantic Scholar
Rapid Selection of Sotrovimab Escape Variants in Severe Acute Respiratory Syndrome Coronavirus 2 Omicron-Infected Immunocompromised Patients
S. Gliga, N. Lübke, A. Killer, H. Gruell +17 more
2022Clinical Infectious Diseases48 citations Open access
Semantic Scholar
HIV-GRADE: A Publicly Available, Rules-Based Drug Resistance Interpretation Algorithm Integrating Bioinformatic Knowledge
M. Obermeier, A. Pironti, T. Berg, P. Braun +13 more
2012Intervirology48 citations Open access
Semantic Scholar
Robustness, sensitivity and reproducibility of eDNA metabarcoding as an environmental biomonitoring tool in coastal salmon aquaculture – An inter-laboratory study
Verena Dully, H. Balliet, L. Frühe, M. Däumer +4 more
202042 citations Open access
Semantic Scholar
Failure of Dolutegravir First-Line ART with Selection of Virus Carrying R263K and G118R.
Nadine Lübke, B. Jensen, F. Hüttig, T. Feldt +12 more
2019New England Journal of Medicine41 citations
Semantic Scholar
Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking
T. Sing, V. Svicher, N. Beerenwinkel, F. Ceccherini-Silberstein +10 more
2005European Conference on Principles of Data Mining and Knowledge Discovery40 citations Open access
Semantic Scholar
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data
M. Döring, J. Büch, G. Friedrich, A. Pironti +9 more
2018Nucleic Acids Res.39 citations Open access
Semantic Scholar
Computational methods for the design of effective therapies against drug resistant HIV strains
N. Beerenwinkel, T. Sing, T. Lengauer, J. Rahnenführer +15 more
2005Bioinform.38 citations Open access
Semantic Scholar
Evaluation of Three Glycoprotein G2-Based Enzyme Immunoassays for Detection of Antibodies to Herpes Simplex Virus Type 2 in Human Sera
A. Eis-Hübinger, M. Däumer, B. Matz, K. Schneweis
1999Journal of Clinical Microbiology37 citations Open access
Semantic Scholar
Next-generation sequencing to assess HIV tropism
L. Swenson, M. Däumer, R. Paredes
2012Current Opinion in HIV and AIDS35 citations Open access
Semantic Scholar
Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants.
M. Noguera-Julián, A. Cozzi-Lepri, F. Di Giallonardo, R. Schuurman +30 more
2016Clinical Microbiology and Infection33 citations Open access
Semantic Scholar
An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing.
B. Simen, Michael S. Braverman, I. Abbate, J. Aerssens +16 more
2014Journal of Virological Methods33 citations
Semantic Scholar
Primary drug-resistance in HIV-positive patients on initiation of first-line antiretroviral therapy in Germany.
M. Oette, R. Kaiser, M. Däumer, D. Akbari +10 more
2004European Journal of Medical Research33 citations
Semantic Scholar
Full genome ultra‐deep pyrosequencing associates G‐to‐A hypermutation of the hepatitis B virus genome with the natural progression of hepatitis B
B. Beggel, C. Münk, M. Däumer, K. Hauck +3 more
2013Journal of Viral Hepatitis29 citations
Semantic Scholar
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis
M. Däumer, R. Kaiser, R. Klein, Thomas Lengauer +2 more
2011BMC Medical Informatics Decis. Mak.28 citations Open access
Semantic Scholar
Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART.
C. Lehmann, M. Däumer, I. Boussaad, T. Sing +6 more
2006Journal of Clinical Virology28 citations
Semantic Scholar
Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy.
M. Balduin, S. Sierra, M. Däumer, J. Rockstroh +8 more
2005Journal of Clinical Virology25 citations
Semantic Scholar
A novel internally controlled real-time reverse transcription-PCR assay for HIV-1 RNA targeting the pol integrase genomic region.
Jens Müller, A. Eis-Hübinger, M. Däumer, R. Kaiser +4 more
2007Journal of Virological Methods21 citations
Semantic Scholar
Multicenter Evaluation of Two Next-Generation HIV-1 Quantitation Assays, Aptima Quant Dx and Cobas 6800, in Comparison to the RealTime HIV-1 Reference Assay
F. Wiesmann, R. Ehret, G. Naeth, M. Däumer +9 more
2018Journal of Clinical Microbiology20 citations Open access
Semantic Scholar
Characterisation of the epitope for a herpes simplex virus glycoprotein B-specific monoclonal antibody with high protective capacity
M. Däumer, B. Schneider, Doris M. Giesen, Sheriff Aziz +7 more
2011Medical Microbiology and Immmunology19 citations
Semantic Scholar
In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing.
Stefanie A Knoepfel, F. Di Giallonardo, M. Däumer, A. Thielen +1 more
2011Journal of Virological Methods19 citations
Semantic Scholar
Selective Pressures of HLA Genotypes and Antiviral Therapy on Human Immunodeficiency Virus Type 1 Sequence Mutation at a Population Level
G. Ahlenstiel, K. Roomp, M. Däumer, J. Nattermann +8 more
2007Clinical and Vaccine Immunology19 citations Open access
Semantic Scholar
Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach.
S. Sierra, R. Kaiser, Nadine Lübke, A. Thielen +9 more
2011Journal of Visualized Experiments18 citations Open access
Semantic Scholar
Therapeutic Immune Recovery and Reduction of CXCR4-Tropic HIV-1
J. Bader, M. Däumer, F. Schöni-Affolter, J. Böni +4 more
2017Clinical Infectious Diseases17 citations Open access
Semantic Scholar
HIV-1 persistent viremia is frequently followed by episodes of low-level viremia
Marek Widera, M. Dirks, B. Bleekmann, R. Jablonka +5 more
2017Medical Microbiology and Immmunology17 citations Open access
Semantic Scholar
Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting
Andreas Walker, Torsten Houwaart, P. Finzer, L. Ehlkes +21 more
2021Clinical Infectious Diseases15 citations Open access
Semantic Scholar
A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing
Elizabeth P. St. John, B. Simen, Gregory S. Turenchalk, Michael S. Braverman +15 more
2016PLoS ONE15 citations Open access
Semantic Scholar
Inferring Viral Tropism from Genotype with Massively Parallel Sequencing: Qualitative and Quantitative Analysis
M. Däumer, R. Kaiser, R. Klein, Thomas Lengauer +2 more
200814 citations
Semantic Scholar
High turnaround times and low viral resuppression rates after reinforced adherence counselling following a confirmed virological failure diagnostic algorithm in HIV‐infected patients on first‐line antiretroviral therapy from Tanzania
A. Kroidl, Tassilo Burger, Agatha Urio, Roki Mugeniwalwo +8 more
2020Tropical medicine & international health13 citations Open access
Semantic Scholar
HIV-1 Tropism Testing in Subjects Achieving Undetectable HIV-1 RNA: Diagnostic Accuracy, Viral Evolution and Compartmentalization
C. Pou, F. Codoñer, A. Thielen, R. Bellido +13 more
2013PLoS ONE13 citations Open access
Semantic Scholar

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