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Chandana Tennakoon · SciRah

Researcher profile · Semantic Scholar

Chandana Tennakoon

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Chandana Tennakoon — researcher profile on SciRah

h-index: 13
Works: 44
Citations: 1,730

Most-cited papers

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma
Wing-Kin Sung, Han-Cheng Zheng, Shu-Yu D. Li, Ronghua Chen +32 more
2012Nature Genetics912 citations
Semantic Scholar
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
Guo-Liang Li, M. Fullwood, Han Xu, F. Mulawadi +9 more
2010Genome Biology329 citations Open access
Semantic Scholar
BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation
Jing-Quan Lim, Chandana Tennakoon, Guo-Liang Li, Eleanor Wong +3 more
2012Genome Biology69 citations Open access
Semantic Scholar
BatMis: a fast algorithm for k-mismatch mapping
Chandana Tennakoon, Rikky W. Purbojati, Wing-Kin Sung
2012Bioinform.37 citations Open access
Semantic Scholar
Comprehensive analysis of transcriptome profiles in hepatocellular carcinoma
Yu Jin, Wai Yeow Lee, S. Toh, Chandana Tennakoon +7 more
2019Journal of Translational Medicine36 citations Open access
Semantic Scholar
Comprehensive Intrinsic Disorder Analysis of 6108 Viral Proteomes: From the Extent of Intrinsic Disorder Penetrance to Functional Annotation of Disordered Viral Proteins.
Naveen Kumar, R. Kaushik, Chandana Tennakoon, V. Uversky +3 more
2021Journal of Proteome Research32 citations Open access
Semantic Scholar
African swine fever virus NAM P1/95 is a mixture of genotype I and genotype VIII viruses
L. Goatley, G. Freimanis, Chandana Tennakoon, A. Bastos +2 more
2024Microbiology Resource Announcements25 citations Open access
Semantic Scholar
Evolutionary Signatures Governing the Codon Usage Bias in Coronaviruses and Their Implications for Viruses Infecting Various Bat Species
Naveen Kumar, R. Kaushik, Chandana Tennakoon, V. Uversky +6 more
2021Viruses22 citations Open access
Semantic Scholar
Multiple novel non-canonically transcribed sub-genomic mRNAs produced by avian coronavirus infectious bronchitis virus
S. Keep, Michael S. Oade, Filip Lidzbarski-Silvestre, K. Bentley +8 more
2020Journal of General Virology20 citations Open access
Semantic Scholar
Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa
I. Haga, B. Shih, G. Tore, Noemi Polo +24 more
2024Viruses19 citations Open access
Semantic Scholar
BATVI: Fast, sensitive and accurate detection of virus integrations
Chandana Tennakoon, Wing-Kin Sung
2017BMC Bioinformatics18 citations Open access
Semantic Scholar
Platform Comparison for Evaluation of ALK Protein Immunohistochemical Expression, Genomic Copy Number and Hotspot Mutation Status in Neuroblastomas
B. Yan, C. Kuick, M. Lim, Kavita Venkataraman +9 more
2014PLoS ONE17 citations Open access
Semantic Scholar
Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions
Naveen Kumar, R. Kaushik, Chandana Tennakoon, V. Uversky +3 more
2021Briefings Bioinform.14 citations Open access
Semantic Scholar
Deletion of the s2m RNA Structure in the Avian Coronavirus Infectious Bronchitis Virus and Human Astrovirus Results in Sequence Insertions
S. Keep, Giulia Dowgier, V. Lulla, P. Britton +6 more
2023Journal of Virology13 citations Open access
Semantic Scholar
Single-cell analysis reveals androgen receptor regulates the ER-to-Golgi trafficking pathway with CREB3L2 to drive prostate cancer progression
Ling-Ling Hu, Xin Chen, Nitin P Narwade, M. Lim +9 more
2021Oncogene13 citations
Semantic Scholar
Complete Coding Sequence of a Novel Bluetongue Virus Isolated from a Commercial Sheeppox Vaccine
P. Rajko-Nenow, N. Golender, V. Bumbarov, Hannah Brown +5 more
2020Microbiology Resource Announcements13 citations Open access
Semantic Scholar
SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data
L. Ferretti, Chandana Tennakoon, A. Silesian, Graham L. Freimanis +1 more
2019Genes13 citations Open access
Semantic Scholar
BioCarian: search engine for exploratory searches in heterogeneous biological databases
Nazar Zaki, Chandana Tennakoon
2017BMC Bioinformatics13 citations Open access
Semantic Scholar
Complete Genome Sequencing of Field Isolates of Peste des Petits Ruminants Virus from Tanzania Revealed a High Nucleotide Identity with Lineage III PPR Viruses
E. Kinimi, M. Mahapatra, T. Kgotlele, M. Makange +8 more
2021Animals12 citations Open access
Semantic Scholar
Knowledge graph construction and search for biological databases
Nazar Zaki, Chandana Tennakoon, Hany Al Ashwal
2017International Conference on Research and Innovation in Information Systems11 citations
Semantic Scholar
Exploiting Viral DNA Genomes to Explore the Dispersal History of African Swine Fever Genotype II Lineages in Europe
Fabiana Gámbaro, L. Goatley, Thomas J. Foster, Chandana Tennakoon +6 more
2025Genome Biology and Evolution10 citations Open access
Semantic Scholar
A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus
K. Chrzastek, Chandana Tennakoon, D. Bialy, Graham L. Freimanis +2 more
2022BMC Genomics10 citations Open access
Semantic Scholar
A Standardized Pipeline for Assembly and Annotation of African Swine Fever Virus Genome
Edward Spinard, Mark Dinhobl, Cassidy N. G. Erdelyan, J. O'Dwyer +22 more
2024Viruses9 citations Open access
Semantic Scholar
BatAlign: an incremental method for accurate alignment of sequencing reads
Jing-Quan Lim, Chandana Tennakoon, P. Guan, Wing-Kin Sung
2015Nucleic Acids Research9 citations Open access
Semantic Scholar
An Improved αvβ6-Receptor-Expressing Suspension Cell Line for Foot-and-Mouth Disease Vaccine Production
Yongjie Harvey, B. Jackson, B. V. Carr, K. Childs +5 more
2022Viruses8 citations Open access
Semantic Scholar
Detection of a novel reassortant epizootic hemorrhagic disease virus serotype 6 in cattle in Trinidad, West Indies, containing nine RNA segments derived from exotic EHDV strains with an Australian origin
P. Rajko-Nenow, T. Brown-Joseph, Chandana Tennakoon, J. Flannery +2 more
2019Infection, Genetics and Evolution8 citations Open access
Semantic Scholar
Recombinant infectious bronchitis virus containing mutations in non-structural proteins 10, 14, 15, and 16 and within the macrodomain provides complete protection against homologous challenge
S. Keep, Katalin Foldes, Guilia Dowgier, Graham L. Freimanis +9 more
2025Journal of Virology7 citations Open access
Semantic Scholar
Full genome sequence analysis of African swine fever virus isolates from Cameroon
L. Goatley, Graham L. Freimanis, Chandana Tennakoon, Thomas J. Foster +6 more
2023bioRxiv6 citations Open access
Semantic Scholar
Using pangenome variation graphs to improve mutation detection in a large DNA virus
Tim Downing, Chandana Tennakoon, Lidia Lasecka-Dykes, Caroline F. Wright
2026bioRxiv5 citations Open access
Semantic Scholar
Universal amplification and sequencing of foot-and-mouth disease virus complete genomes using nanopore technology
Andrew E. Shaw, K. Lebani, Lina González Gordon, Ugonna E. Ihearahu +12 more
2025BMC Genomics5 citations Open access
Semantic Scholar
Panalyze: automated virus pangenome variation graph construction, analysis and annotation
Chandana Tennakoon, Thibaut Freville, Tim Downing
2025bioRxiv5 citations Open access
Semantic Scholar
The Genomic and Epigenomic Landscapes of Blast Crisis Transformation in Chronic Myeloid Leukemia
S. Ong, T. Pathiraja, Asif Javed, Xin Xuan Sheila Soh +17 more
20155 citations
Semantic Scholar
Biological Knowledge Graph Construction, Search, and Navigation
Chandana Tennakoon, Nazar Zaki, Hiba Arnaout, Shady Elbassuoni +2 more
2019Leveraging Biomedical and Healthcare Data3 citations
Semantic Scholar
A random priming amplification method for whole genome sequencing of SARS-CoV-2 and H1N1 influenza A virus
K. Chrzastek, Chandana Tennakoon, D. Bialy, Graham L. Freimanis +2 more
2021bioRxiv2 citations Open access
Semantic Scholar
Evaluating how infectious bursal disease virus (IBDV) infection influences influenza H3N8 challenge in chickens
Salik Nazki, Chandana Tennakoon, V. R. Reddy, Ya-Na Chen +5 more
2026Journal of General Virology1 citations Open access
Semantic Scholar
Prior infection with IBDV prolonged the shedding of a mallard H3N8 influenza A virus (IAV) challenge from the oropharyngeal cavity of some chickens and increased the number of amino acid substitutions in the IAV samples
Salik Nazki, Chandana Tennakoon, V. R. Reddy, Ya-Na Chen +5 more
2025bioRxiv1 citations Open access
Semantic Scholar
Efficient Exploration of Biological Data Using Semantic Web Compatible Databases
Nazar Zaki, Chandana Tennakoon
20162016 3rd International Conference on Soft Computing & Machine Intelligence (ISCMI)1 citations
Semantic Scholar
Panalyze: automated virus pangenome variation graph construction and analysis
Chandana Tennakoon, Thibaut Freville, Tim Downing
1 citations
Semantic Scholar
First detection of High pathogenicity Avian Influenza A(H5N1) Clade 2.3.4.4b Genotype EA-2024-DI.2.1 in Egypt associated with migratory wild birds
N. Hagag, Amany Adel, Mostafa R. Zaher, A. Zanaty +13 more
2026bioRxiv0 citations Open access
Semantic Scholar
Spike protein derived from an apathogenic IBV strain confers attenuated phenotype to a nephropathogenic IBV strain
James Kirk, Samantha Sives, Adam Rayment, Amber Tappin +13 more
2026Journal of Virology0 citations Open access
Semantic Scholar
1 A random priming amplification method for whole genome sequencing of SARS-CoV-2 and 1 H 1 N 1 influenza A virus . 2
K. Chrzastek, Chandana Tennakoon, D. Bialy, Graham L. Freimanis +3 more
20210 citations
Semantic Scholar
Contributors
D. Agoston, Alanoud Al Jaberi, Ali Alawieh, L. Angelis +30 more
2019Leveraging Biomedical and Healthcare Data0 citations
Semantic Scholar
Methods of Creating Knowledge Graph by Linking Biological Databases
Nazar Zaki, Chandana Tennakoon, Hany Al Ashwal, Alanoud Al Jaberi +1 more
2018Practical Applications of Computational Biology & Bioinformatics0 citations
Semantic Scholar
Functional Analysis of the CML Blast Crisis Transcriptome and Epigenome Using Crispr-CAS9 and Pharmacologic Approaches
T. Ko, Xin Xuan Sheila Soh, Willie Yu, Peter S. Winter +23 more
20150 citations
Semantic Scholar

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Erica Bickerton×4
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J. Flannery — researcher profile on SciRah

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Nazar Zaki — researcher profile on SciRah

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W. Lee — researcher profile on SciRah

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R. Kaushik — researcher profile on SciRah

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V. Uversky — researcher profile on SciRah

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