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Tokumasa Horiike · SciRah

Researcher profile · Semantic Scholar

Tokumasa Horiike

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Tokumasa Horiike — researcher profile on SciRah

h-index: 16
Works: 30
Citations: 639

Most-cited papers

Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis
Tokumasa Horiike, Kazuo Hamada, S. Kanaya, T. Shinozawa
2001Nature Cell Biology142 citations
Semantic Scholar
AN INTRODUCTION TO MOLECULAR PHYLOGENETIC ANALYSIS
Tokumasa Horiike
201655 citations Open access
Semantic Scholar
A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip
H. Hiura, Atsushi Sugawara, Hidehiko Ogawa, R. John +8 more
2010Nucleic Acids Research46 citations Open access
Semantic Scholar
The Origin of Eukaryotes Is Suggested as the Symbiosis of Pyrococcus into γ-Proteobacteria by Phylogenetic Tree Based on Gene Content
Tokumasa Horiike, Kazuo Hamada, Daisuke Miyata, T. Shinozawa
2004Journal of Molecular Evolution43 citations
Semantic Scholar
Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock: identity of EST sequences between Haplochromis chilotes and Haplochromis sp. "Redtailsheller".
M. Watanabe, N. Kobayashi, T. Shin-I, Tokumasa Horiike +3 more
2004Gene35 citations
Semantic Scholar
Evolutionary Analysis of the Highly Conserved Insect Odorant Coreceptor (Orco) Revealed a Positive Selection Mode, Implying Functional Flexibility
Alan Soffan, S. Subandiyah, Hirokazu Makino, Tomoaki Watanabe +1 more
2018Journal of Insect Science32 citations Open access
Semantic Scholar
Biochemical characterization of the Arabidopsis KS-type dehydrin protein, whose gene expression is constitutively abundant rather than stress dependent
M. Hara, Yuri Shinoda, Masayuki Kubo, D. Kashima +4 more
2011Acta Physiologiae Plantarum31 citations Open access
Semantic Scholar
Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs
Tokumasa Horiike, Daisuke Miyata, Kazuo Hamada, S. Saruhashi +5 more
2008Gene31 citations Open access
Semantic Scholar
Ortholog-Finder: A Tool for Constructing an Ortholog Data Set
Tokumasa Horiike, R. Minai, Daisuke Miyata, Yoji Nakamura +1 more
2016Genome Biology and Evolution25 citations Open access
Semantic Scholar
Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes.
Tokumasa Horiike, Kazuo Hamada, T. Shinozawa
2002Genes & Genetic Systems21 citations Open access
Semantic Scholar
The Evolution of Molybdenum Dependent Nitrogenase in Cyanobacteria
Tomoaki Watanabe, Tokumasa Horiike
2021Biology18 citations Open access
Semantic Scholar
A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip
H. Hiura, Atsushi Sugawara, Hidehiko Ogawa, R. John +8 more
2010Nucleic Acids Research17 citations Open access
Semantic Scholar
Molecular Chaperones: Proposal of a Systematic Computer-Oriented Nomenclature and Construction of a Centralized Database
H. Sghaier, Thuy Huyen Le Ai, Tokumasa Horiike, T. Shinozawa
2004Silico Biol.17 citations
Semantic Scholar
Presence of isochore structures in reptile genomes suggested by the relationship between GC contents of intron regions and those of coding regions.
Kazuo Hamada, Tokumasa Horiike, H. Ota, K. Mizuno +1 more
2003Genes & Genetic Systems17 citations Open access
Semantic Scholar
Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets.
N. Kobayashi, M. Watanabe, Tokumasa Horiike, Y. Kohara +1 more
2009Gene16 citations
Semantic Scholar
Comprehensive analysis of the origin of eukaryotic genomes.
S. Saruhashi, Kazuo Hamada, Daisuke Miyata, Tokumasa Horiike +1 more
2008Genes & Genetic Systems16 citations Open access
Semantic Scholar
Changes in body temperature pattern in vertebrates do not influence the codon usages of alpha-globin genes.
Kazuo Hamada, Tokumasa Horiike, S. Kanaya, Hiroshi K. Nakamura +4 more
2002Genes & Genetic Systems13 citations Open access
Semantic Scholar
Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms
H. Hirata, Misako Kashihara, Tokumasa Horiike, Tomohiro Suzuki +3 more
2016Genome Announcements12 citations Open access
Semantic Scholar
Metal-binding characteristics of the protein which shows the highest histidine content in the Arabidopsis genome
M. Hara, D. Kashima, Tokumasa Horiike, T. Kuboi
201010 citations Open access
Semantic Scholar
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information
Tomoaki Watanabe, Akinori Kure, Tokumasa Horiike
2023Genome Biology and Evolution9 citations Open access
Semantic Scholar
HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer
Tokumasa Horiike, Daisuke Miyata, Y. Tateno, R. Minai
2011Bioinformation9 citations Open access
Semantic Scholar
Determination of whole prokaryotic phylogeny by the development of a random extraction method.
S. Saruhashi, Kazuo Hamada, Tokumasa Horiike, T. Shinozawa
2007Gene8 citations
Semantic Scholar
Chronology of emergence of the genus Leptospira and over-representation of gene families enriched by vitamin B2, B12 biosynthesis, cell adhesion and external encapsulating structure in L. interrogans isolates from asymptomatic dogs.
Alongkorn Kurilung, C. Keeratipusana, Tokumasa Horiike, P. Suriyaphol +2 more
2019Infection, Genetics and Evolution4 citations
Semantic Scholar
Genetic population structure of the eight-barbel loach Lefua echigonia in the Ise Bay region, a single paleo-river basin in central Honshu, Japan
G. Ito, Yasunori Koya, S. Kitanishi, Tokumasa Horiike +1 more
2019Ichthyological Research4 citations
Semantic Scholar
Influence of Long-Branch Bias on Phylogenetic Analysis.
Tomoaki Watanabe, Shohei Nakata, Tokumasa Horiike
2025Genes & Genetic Systems3 citations Open access
Semantic Scholar
Genome Identifier: A Tool for Phylogenetic Analysis of Microbial Genomes
Yukinari Shimoyama, Tokumasa Horiike
2019IPSJ Transactions on Bioinformatics2 citations Open access
Semantic Scholar
Nucleus Symbiosis Hypothesis Formation of Eukaryotic Cell Nuclei by the Symbiosis of Archaea in Bacteria
T. Shinozawa, Tokumasa Horiike, Kazuo Hamada
20012 citations
Semantic Scholar
Does endo-symbiosis explain the origin of the nucleus? - Reply
T. Shinozawa, Tokumasa Horiike, Kazuo Hamada
2001Nature Cell Biology2 citations
Semantic Scholar
ゲノムデータの分子系統解析への応用と今後の展望
Tokumasa Horiike, Tomoaki Watanabe
2023KAGAKU TO SEIBUTSU0 citations Open access
Semantic Scholar
Genetic population structure of the eight-barbel loach Lefua echigonia in the Ise Bay region, a single paleo-river basin in central Honshu, Japan
G. Ito, Yasunori Koya, S. Kitanishi, Tokumasa Horiike +1 more
2019Ichthyological Research0 citations
Semantic Scholar

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T. Shinozawa×11
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T. Shinozawa — researcher profile on SciRah
Kazuo Hamada×10
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Daisuke Miyata×5
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Y. Tateno×4
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Tomoaki Watanabe

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S. Saruhashi×3

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S. Kanaya — researcher profile on SciRah

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H. Hiura — researcher profile on SciRah

Atsushi Sugawara×2

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Hidehiko Ogawa×2

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R. John — researcher profile on SciRah

Naoko Miyauchi×2

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