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Yoji Nakamura · SciRah

Researcher profile · Semantic Scholar

Yoji Nakamura

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Yoji Nakamura — researcher profile on SciRah

h-index: 24
Works: 93
Citations: 2,350

Most-cited papers

Biased biological functions of horizontally transferred genes in prokaryotic genomes
Yoji Nakamura, T. Itoh, H. Matsuda, T. Gojobori
2004Nature Genetics504 citations Open access
Semantic Scholar
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Yousuke Nishio, Yoji Nakamura, Y. Kawarabayasi, Y. Usuda +7 more
2003Genome Research229 citations Open access
Semantic Scholar
The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)
Yoji Nakamura, Naobumi V. Sasaki, Masahiro Kobayashi, N. Ojima +16 more
2013PLoS ONE185 citations Open access
Semantic Scholar
Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna
Yoji Nakamura, Kazuki Mori, K. Saitoh, K. Oshima +20 more
2013Proceedings of the National Academy of Sciences of the United States of America138 citations Open access
Semantic Scholar
Full-Genome Sequencing and Confirmation of the Causative Agent of Erythrocytic Inclusion Body Syndrome in Coho Salmon Identifies a New Type of Piscine Orthoreovirus
Tomokazu Takano, Akatsuki Nawata, T. Sakai, Tomomasa Matsuyama +8 more
2016PLoS ONE91 citations Open access
Semantic Scholar
Comparative study of the validity of three regions of the 18S‐rRNA gene for massively parallel sequencing‐based monitoring of the planktonic eukaryote community
Akifumi S. Tanabe, S. Nagai, Kohsuke Hida, Motoshige Yasuike +4 more
2016Molecular Ecology Resources86 citations
Semantic Scholar
The genome stability in Corynebacterium species due to lack of the recombinational repair system.
Yoji Nakamura, Yousuke Nishio, K. Ikeo, T. Gojobori
2003Gene80 citations
Semantic Scholar
A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication
W. Kai, K. Nomura, A. Fujiwara, Yoji Nakamura +10 more
2014BMC Genomics79 citations Open access
Semantic Scholar
Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species
Motoshige Yasuike, I. Nishiki, Y. Iwasaki, Yoji Nakamura +7 more
2017PLoS ONE58 citations Open access
Semantic Scholar
Comparative genomics reveals that a fish pathogenic bacterium Edwardsiella tarda has acquired the locus of enterocyte effacement (LEE) through horizontal gene transfer
Yoji Nakamura, Tomokazu Takano, Motoshige Yasuike, T. Sakai +2 more
2013BMC Genomics47 citations Open access
Semantic Scholar
Effects of plankton net characteristics on metagenetic community analysis of metazoan zooplankton in a coastal marine ecosystem
Junya Hirai, Motoshige Yasuike, A. Fujiwara, Yoji Nakamura +4 more
201536 citations
Semantic Scholar
Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Yousuke Nishio, Yoji Nakamura, Y. Usuda, S. Sugimoto +5 more
2004Molecular biology and evolution33 citations Open access
Semantic Scholar
Reproduction-Related Genes in the Pearl Oyster Genome
Toshie Matsumoto, T. Masaoka, A. Fujiwara, Yoji Nakamura +2 more
2013Zoological Science32 citations
Semantic Scholar
A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis
Tomomasa Matsuyama, Motoshige Yasuike, A. Fujiwara, Yoji Nakamura +11 more
2017PLoS ONE30 citations Open access
Semantic Scholar
Gene cluster analysis method identifies horizontally transferred genes with high reliability and indicates that they provide the main mechanism of operon gain in 8 species of gamma-Proteobacteria.
Keiichi Homma, S. Fukuchi, Yoji Nakamura, T. Gojobori +1 more
2007Molecular biology and evolution30 citations Open access
Semantic Scholar
Detection of Growth-Related Quantitative Trait Loci and High-Resolution Genetic Linkage Maps Using Simple Sequence Repeat Markers in the Kelp Grouper (Epinephelus bruneus)
Kanonkporn Kessuwan, S. Kubota, Qi Liu, M. Sano +5 more
2015Marine Biotechnology28 citations Open access
Semantic Scholar
Dopamine Receptor Genes and Evolutionary Differentiation in the Domestication of Fighting Cocks and Long-Crowing Chickens
Tomoyoshi Komiyama, H. Iwama, N. Osada, Yoji Nakamura +3 more
2014PLoS ONE27 citations Open access
Semantic Scholar
Molecular diet analysis of Anguilliformes leptocephalus larvae collected in the western North Pacific
S. Chow, Nobuharu Inaba, S. Nagai, Hiroaki Kurogi +8 more
2019PLoS ONE26 citations Open access
Semantic Scholar
Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS)-based technique.
S. Nagai, Hungyen Chen, Y. Kawakami, Keigo Yamamoto +9 more
2019Harmful Algae25 citations Open access
Semantic Scholar
Ortholog-Finder: A Tool for Constructing an Ortholog Data Set
Tokumasa Horiike, R. Minai, Daisuke Miyata, Yoji Nakamura +1 more
2016Genome Biology and Evolution25 citations Open access
Semantic Scholar
Complete Genome Sequence Analysis of Two Pseudomonas plecoglossicida Phages, Potential Therapeutic Agents
Y. Kawato, Motoshige Yasuike, Yoji Nakamura, Yuya Shigenobu +3 more
2014Applied and Environmental Microbiology25 citations Open access
Semantic Scholar
A genetic linkage map of kelp grouper (Epinephelus bruneus) based on microsatellite markers
Qi Liu, T. Sakamoto, S. Kubota, N. Okamoto +8 more
201325 citations Open access
Semantic Scholar
Automated screening and primer design of fish microsatellite DNA loci on pyrosequencing data
Yoji Nakamura, Yuya Shigenobu, T. Sugaya, T. Kurokawa +1 more
2013Ichthyological Research24 citations
Semantic Scholar
Rate and polarity of gene fusion and fission in Oryza sativa and Arabidopsis thaliana.
Yoji Nakamura, T. Itoh, W. Martin
2007Molecular biology and evolution24 citations Open access
Semantic Scholar
The yellowtail (Seriola quinqueradiata) genome and transcriptome atlas of the digestive tract
Motoshige Yasuike, Y. Iwasaki, I. Nishiki, Yoji Nakamura +5 more
2018DNA Research22 citations Open access
Semantic Scholar
A novel jumbo Tenacibaculum maritimum lytic phage with head-fiber-like appendages
Y. Kawato, Indah Istiqomah, Alkhateib Y. Gaafar, M. Hanaoka +6 more
2019Archives of Virology21 citations
Semantic Scholar
Comparative Genomic Characterization of Three Streptococcus parauberis Strains in Fish Pathogen, as Assessed by Wide-Genome Analyses
S. Nho, J. Hikima, Seong Bin Park, H. Jang +11 more
2013PLoS ONE19 citations Open access
Semantic Scholar
Identification of novel MAGE-A6- and MAGE-A12-derived HLA-A24-restricted cytotoxic T lymphocyte epitopes using an in silico peptide-docking assay
Yasuto Akiyama, Masaru Komiyama, Yoji Nakamura, A. Iizuka +8 more
2012Cancer Immunology and Immunotherapy19 citations Open access
Semantic Scholar
Full-genome sequence of a novel myovirus, GF-2, infecting Edwardsiella tarda: comparison with other Edwardsiella myoviral genomes
Motoshige Yasuike, I. Nishiki, Y. Iwasaki, Yoji Nakamura +7 more
2015Archives of Virology16 citations
Semantic Scholar
Targeted mutagenesis of the ryanodine receptor by Platinum TALENs causes slow swimming behaviour in Pacific bluefin tuna (Thunnus orientalis)
K. Higuchi, Y. Kazeto, Y. Ozaki, T. Yamaguchi +18 more
2019Scientific Reports15 citations Open access
Semantic Scholar
Rhodopsin gene copies in Japanese eel originated in a teleost-specific genome duplication
Yoji Nakamura, Motoshige Yasuike, Miyuki Mekuchi, Y. Iwasaki +4 more
2017Zoological Letters15 citations Open access
Semantic Scholar
Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs
Hiroki Ban, Shinya Sato, S. Yoshikawa, K. Yamada +7 more
2023Communications Biology14 citations Open access
Semantic Scholar
Prediction of the Sex-Associated Genomic Region in Tunas (Thunnus Fishes)
Yoji Nakamura, K. Higuchi, K. Kumon, Motoshige Yasuike +3 more
2021International Journal of Genomics14 citations Open access
Semantic Scholar
A functional genomics tool for the Pacific bluefin tuna: Development of a 44K oligonucleotide microarray from whole-genome sequencing data for global transcriptome analysis.
Motoshige Yasuike, A. Fujiwara, Yoji Nakamura, Y. Iwasaki +6 more
2016Gene14 citations Open access
Semantic Scholar
Ichthyobacterium seriolicida gen. nov., sp. nov., a member of the phylum 'Bacteroidetes', isolated from yellowtail fish (Seriola quinqueradiata) affected by bacterial haemolytic jaundice, and proposal of a new family, Ichthyobacteriaceae fam. nov.
Tomokazu Takano, Tomomasa Matsuyama, T. Sakai, Yoji Nakamura +7 more
2016International Journal of Systematic and Evolutionary Microbiology14 citations Open access
Semantic Scholar
Complete Genome Sequence of Nonagglutinating Lactococcus garvieae Strain 122061 Isolated from Yellowtail in Japan
I. Nishiki, Daisaku Oinaka, Y. Iwasaki, Motoshige Yasuike +6 more
2016Genome Announcements13 citations Open access
Semantic Scholar
Constructing Genetic Linkage Maps Using the Whole Genome Sequence of Pacific Bluefin Tuna (Thunnus orientalis) and a Comparison of Chromosome Structure among Teleost Species
Tsubasa Uchino, Yoji Nakamura, M. Sekino, W. Kai +6 more
201613 citations Open access
Semantic Scholar
Transcriptome characterization of gonadal sex differentiation in Pacific bluefin tuna, Thunnus orientalis (Temminck et Schlegel)
Takao Hayashida, Satoshi Soma, Yoji Nakamura, K. Higuchi +2 more
2023Scientific Reports12 citations Open access
Semantic Scholar
Estimation of tuna population by the improved analytical pipeline of unique molecular identifier-assisted HaCeD-Seq (haplotype count from eDNA)
K. Yoshitake, A. Fujiwara, Aiko Matsuura, M. Sekino +10 more
2021Scientific Reports12 citations Open access
Semantic Scholar
Influences of diurnal sampling bias on fixed-point monitoring of plankton biodiversity determined using a massively parallel sequencing-based technique.
S. Nagai, Kohsuke Hida, Shingo Urushizaki, Goh Onitsuka +8 more
2016Gene12 citations
Semantic Scholar
Complete Genome Sequence of the Edwardsiella ictaluri-Specific Bacteriophage PEi21, Isolated from River Water in Japan
Motoshige Yasuike, W. Kai, Yoji Nakamura, A. Fujiwara +7 more
2014Genome Announcements12 citations Open access
Semantic Scholar
Development of ten microsatellite markers for Alexandrium ostenfeldii, a bloom-forming dinoflagellate producing diverse phycotoxins
S. Nagai, Motoshige Yasuike, Yoji Nakamura, P. Tahvanainen +1 more
2015Journal of Applied Phycology11 citations
Semantic Scholar
Complete Genome Sequence of a Novel Myovirus Which Infects Atypical Strains of Edwardsiella tarda
Motoshige Yasuike, Emi Sugaya, Yoji Nakamura, Yuya Shigenobu +7 more
2013Genome Announcements11 citations Open access
Semantic Scholar
Universal primers for exon-priming intron-crossing (EPIC) PCR on ribosomal protein genes in marine animals
S. Chow, T. Yanagimoto, Yoji Nakamura
2015International Aquatic Research10 citations Open access
Semantic Scholar
Development of novel microsatellite markers for Cymodocea rotundata Ehrenberg (Cymodoceaceae), a pioneer seagrass species widely distributed in the Indo-Pacific
Dan M. Arriesgado, Yuichi Nakajima, Y. Matsuki, C. Lian +8 more
2013Conservation Genetics Resources10 citations
Semantic Scholar
Complete Genome Sequences of Edwardsiella tarda-Lytic Bacteriophages KF-1 and IW-1
Motoshige Yasuike, Emi Sugaya, Yoji Nakamura, Yuya Shigenobu +6 more
2013Genome Announcements10 citations Open access
Semantic Scholar
Genotyping‐by‐sequencing for construction of a new genetic linkage map and QTL analysis of growth‐related traits in Pacific bluefin tuna
Tsubasa Uchino, Eri Hosoda, Yoji Nakamura, Motoshige Yasuike +10 more
20189 citations Open access
Semantic Scholar
Identification of cytomegalovirus (CMV)pp65 antigen-specific human monoclonal antibodies using single B cell-based antibody gene cloning from melanoma patients.
A. Iizuka, Masaru Komiyama, Sachiko Tai, Chie Oshita +11 more
2011Immunology Letters9 citations
Semantic Scholar
V-GAP: Viral genome assembly pipeline.
Yoji Nakamura, Motoshige Yasuike, I. Nishiki, Y. Iwasaki +7 more
2016Gene8 citations Open access
Semantic Scholar
Characterization of 12 polymorphic microsatellite DNA loci in the blue shark, Prionace glauca, isolated by next generation sequencing approach
M. Taguchi, Yuya Shigenobu, M. Ohkubo, T. Yanagimoto +4 more
2013Conservation Genetics Resources8 citations
Semantic Scholar

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Motoshige Yasuike×30
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Motoshige Yasuike — researcher profile on SciRah
A. Fujiwara×25
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A. Fujiwara — researcher profile on SciRah
Takanori Kobayashi×15
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M. Sano — researcher profile on SciRah

T. Gojobori×11

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I. Nishiki — researcher profile on SciRah

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Y. Iwasaki — researcher profile on SciRah

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T. Sugaya — researcher profile on SciRah

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Y. Kawato — researcher profile on SciRah

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T. Nakai — researcher profile on SciRah