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Derek J. Bailey · SciRah

Researcher profile · Semantic Scholar

Derek J. Bailey

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Derek J. Bailey — researcher profile on SciRah

h-index: 26
Works: 43
Citations: 4,928

Most-cited papers

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics*
Amelia C. Peterson, J. Russell, Derek J. Bailey, M. Westphall +1 more
2012Molecular & Cellular Proteomics1,090 citations Open access
Semantic Scholar
Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome
Alexander S. Hebert, Kristin E. Dittenhafer-Reed, Wei Yu, Derek J. Bailey +13 more
2012Molecules and Cells647 citations Open access
Semantic Scholar
The One Hour Yeast Proteome
Alexander S. Hebert, Alicia L. Richards, Derek J. Bailey, Arne Ulbrich +3 more
2013Molecular & Cellular Proteomics506 citations Open access
Semantic Scholar
Proteomic and phosphoproteomic comparison of human ES and iPS cells
D. Phanstiel, J. Brumbaugh, C. Wenger, Shu-Lan Tian +9 more
2011Nature Methods276 citations Open access
Semantic Scholar
Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics
Devin K. Schweppe, J. Eng, Qing Yu, Derek J. Bailey +6 more
2019bioRxiv267 citations Open access
Semantic Scholar
Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer
Alexander S. Hebert, S. Prasad, M. Belford, Derek J. Bailey +8 more
2018Analytical Chemistry238 citations Open access
Semantic Scholar
Building ProteomeTools based on a complete synthetic human proteome
D. Zolg, M. Wilhelm, K. Schnatbaum, J. Zerweck +20 more
2017Nature Methods228 citations Open access
Semantic Scholar
Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry
Devin K. Schweppe, S. Prasad, M. Belford, José Navarrete-Perea +11 more
2019Analytical Chemistry195 citations Open access
Semantic Scholar
Neutron-encoded mass signatures for multi-plexed proteome quantification
Alexander S. Hebert, Anna E. Merrill, Derek J. Bailey, Amelia J Still +4 more
2013Nature Methods178 citations Open access
Semantic Scholar
A quantitative map of the liver mitochondrial phosphoproteome reveals post-translational control of ketogenesis
Paul A. Grimsrud, Joshua J. Carson, Alexander S. Hebert, Shane L. Hubler +10 more
2012Cell Metabolism164 citations Open access
Semantic Scholar
COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA
C. Wenger, D. Phanstiel, M. V. Lee, Derek J. Bailey +1 more
2011Proteomics164 citations Open access
Semantic Scholar
Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis*
Christopher M. Rose, M. Venkateshwaran, J. Volkening, Paul A. Grimsrud +10 more
2012Molecular & Cellular Proteomics117 citations Open access
Semantic Scholar
One-hour proteome analysis in yeast
Alicia L. Richards, Alexander S. Hebert, Arne Ulbrich, Derek J. Bailey +3 more
2015Nature Protocols106 citations Open access
Semantic Scholar
A Novel Differential Ion Mobility Device Expands the Depth of Proteome Coverage and the Sensitivity of Multiplex Proteomic Measurements*
S. Pfammatter, É. Bonneil, F. McManus, S. Prasad +4 more
2018Molecular & Cellular Proteomics95 citations Open access
Semantic Scholar
NeuCode Labels for Relative Protein Quantification *
Anna E. Merrill, Alexander S. Hebert, Matthew E. MacGilvray, Christopher M. Rose +7 more
2014Molecular & Cellular Proteomics86 citations Open access
Semantic Scholar
Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics
Qing Yu, João A. Paulo, Jose Naverrete-Perea, G. McAlister +7 more
2020Analytical Chemistry61 citations Open access
Semantic Scholar
Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation*
Alexander S. Hebert, Anna E. Merrill, Jonathan A. Stefely, Derek J. Bailey +4 more
2013Molecular & Cellular Proteomics58 citations Open access
Semantic Scholar
Instant spectral assignment for advanced decision tree-driven mass spectrometry
Derek J. Bailey, Christopher M. Rose, G. McAlister, J. Brumbaugh +5 more
2012Proceedings of the National Academy of Sciences of the United States of America55 citations Open access
Semantic Scholar
Intelligent Data Acquisition Blends Targeted and Discovery Methods
Derek J. Bailey, Molly T. McDevitt, M. Westphall, D. Pagliarini +1 more
2014Journal of Proteome Research51 citations Open access
Semantic Scholar
The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)*
N. Riley, Matthew J P Rush, Christopher M. Rose, Alicia L. Richards +5 more
2015Molecular & Cellular Proteomics47 citations Open access
Semantic Scholar
High-Resolution Filtering for Improved Small Molecule Identification via GC/MS
Nicholas W. Kwiecien, Derek J. Bailey, Matthew J P Rush, J. Cole +4 more
2015Analytical Chemistry46 citations Open access
Semantic Scholar
Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics
T. Rhoads, Christopher M. Rose, Derek J. Bailey, N. Riley +9 more
2014Analytical Chemistry45 citations Open access
Semantic Scholar
Neutron Encoded Labeling for Peptide Identification
Christopher M. Rose, Anna E. Merrill, Derek J. Bailey, Alexander S. Hebert +2 more
2013Analytical Chemistry42 citations Open access
Semantic Scholar
Statistical Analysis of Electron Transfer Dissociation Pairwise Fragmentation Patterns
Wen-Zhou Li, Chi Song, Derek J. Bailey, G. Tseng +2 more
2011Analytical Chemistry34 citations Open access
Semantic Scholar
Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation.
Pavel V. Shliaha, S. Gibb, V. Gorshkov, Malena Schack Jespersen +6 more
2018Analytical Chemistry27 citations Open access
Semantic Scholar
A Proteogenomic Survey of the Medicago truncatula Genome*
J. Volkening, Derek J. Bailey, Christopher M. Rose, Paul A. Grimsrud +6 more
2012Molecular & Cellular Proteomics27 citations Open access
Semantic Scholar
Characterizing Peptide Neutral Losses Induced by Negative Electron-Transfer Dissociation (NETD)
Neil G. Rumachik, G. McAlister, J. Russell, Derek J. Bailey +2 more
2012Journal of the American Society for Mass Spectrometry26 citations Open access
Semantic Scholar
NeuCode labels with parallel reaction monitoring for multiplexed, absolute protein quantification
Gregory K. Potts, Emily A. Voigt, Derek J. Bailey, Christopher M. Rose +4 more
2016Analytical Chemistry24 citations Open access
Semantic Scholar
Organic acid quantitation by NeuCode methylamidation.
Arne Ulbrich, Derek J. Bailey, M. Westphall, J. Coon
2014Analytical Chemistry16 citations
Semantic Scholar
Integration of Segmented Ion Fractionation and Differential Ion Mobility on a Q-Exactive Hybrid Quadrupole Orbitrap Mass Spectrometer.
S. Pfammatter, Zhaoguan Wu, É. Bonneil, Derek J. Bailey +7 more
2021Analytical Chemistry12 citations
Semantic Scholar
The negative mode proteome with AI-NETD 1 The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation
N. Riley, Matthew J P Rush, Christopher M. Rose, Alicia L. Richards +7 more
20155 citations
Semantic Scholar
Post-Hoc Vibration Mitigation for Single-Molecule Tracking and Diffusion Measurements in Lipid Membranes
Derek J. Bailey, J. T. Kindt, M. M. Taylor, A. Paulson +4 more
20101 citations
Semantic Scholar
MODULAR OPEN RF ARCHITECTURE (MORA): STANDARDIZING THE RF CHAIN
Jason Broczkowski, Derek J. Bailey, Troy M. Ryder, Jason Dirner
2024SAE technical paper series0 citations
Semantic Scholar
Correction to Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry
Devin K. Schweppe, S. Prasad, M. Belford, José Navarrete-Perea +11 more
2020Analytical Chemistry0 citations Open access
Semantic Scholar
A Modified Orbitrap Tribrid Mass Spectrometer with Real Time Search and Advanced Spectral Processing Enhances Multiplexed Proteome Coverage and Quantification Accuracy
A. Robitaille, R. Huguet, Derek J. Bailey, G. McAlister +6 more
20190 citations
Semantic Scholar
Real-time, High Density Monitoring of pTyr Signaling Targets in Human Tumors Using Heavy Peptide Triggered Targeted Quantitation
Aaron S. Gajadhar, Lauren E. Stopfer, C. T. Flower, F. White +11 more
20190 citations
Semantic Scholar
NeuCode labels with parallel reaction monitoring for multiplexed, absolute protein quantification
Gregory K. Potts, Emily A. Voigt, Derek J. Bailey, M. Westphall +4 more
20160 citations
Semantic Scholar
FT-ICR Theory – Ion Cyclotron Motion
Alexander S. Hebert, Alicia L. Richards, Derek J. Bailey, Arne Ulbrich +3 more
20150 citations
Semantic Scholar
Intelligent data acquisition for mass spectrometry-based proteomics
Derek J. Bailey
20140 citations
Semantic Scholar
NeuCode Labels for Relative Protein Quantification* □ S
Anna E. Merrill, Alexander S. Hebert, Matthew E. MacGilvray, Christopher M. Rose +7 more
20140 citations
Semantic Scholar
Title: A proteogenomic survey of the Medicago truncatula genome
J. Volkening, Derek J. Bailey, Christopher M. Rose, Paul A. Grimsrud +4 more
20120 citations
Semantic Scholar
Precursor selection with an artificial intelligence algorithm increases coverage and reproducibility of proteomic samples
Derek J. Bailey, J. Coon, G. McAlister, M. Westphall
20120 citations
Semantic Scholar
Recombinant expression, purification, and construction of fluorescently labeled alpha‐hemolysin for single‐molecule optical studies
A. Paulson, Brynna H. Jones, Derek J. Bailey, Kathleen E. Hubbell +2 more
20080 citations
Semantic Scholar

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