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H. Nakayama · SciRah

Researcher profile · Semantic Scholar

H. Nakayama

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H. Nakayama — researcher profile on SciRah

h-index: 43
Works: 123
Citations: 6,849

Most-cited papers

A serine protease, HtrA2, is released from the mitochondria and interacts with XIAP, inducing cell death.
Yasuyuki Suzuki, Y. Imai, H. Nakayama, Kazuko Takahashi +2 more
2001Molecules and Cells1,182 citations Open access
Semantic Scholar
Human mitochondrial DNA is packaged with TFAM.
T. I. Alam, T. Kanki, Tsuyoshi Muta, K. Ukaji +5 more
2003Nucleic Acids Research400 citations Open access
Semantic Scholar
Landscape of the complete RNA chemical modifications in the human 80S ribosome
M. Taoka, Yuko Nobe, Yuka Yamaki, Ko Sato +7 more
2018Nucleic Acids Research335 citations Open access
Semantic Scholar
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells.
K. Sakamoto, Akiko Hayashi, A. Sakamoto, D. Kiga +9 more
2002Nucleic Acids Research271 citations Open access
Semantic Scholar
An unnatural base pair for incorporating amino acid analogs into proteins
I. Hirao, T. Ohtsuki, T. Fujiwara, T. Mitsui +10 more
2002Nature Biotechnology221 citations
Semantic Scholar
Lipoproteins in bacteria: structures and biosynthetic pathways
H. Nakayama, K. Kurokawa, B. Lee
2012The FEBS Journal212 citations Open access
Semantic Scholar
A direct nanoflow liquid chromatography-tandem mass spectrometry system for interaction proteomics.
T. Natsume, Y. Yamauchi, H. Nakayama, T. Shinkawa +3 more
2002Analytical Chemistry190 citations
Semantic Scholar
An engineered Escherichia coli tyrosyl–tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system
D. Kiga, K. Sakamoto, Koichiro Kodama, T. Kigawa +10 more
2002Proceedings of the National Academy of Sciences of the United States of America159 citations Open access
Semantic Scholar
The Triacylated ATP Binding Cluster Transporter Substrate-binding Lipoprotein of Staphylococcus aureus Functions as a Native Ligand for Toll-like Receptor 2*
K. Kurokawa, Hanna Lee, Kyungbaeg Roh, Miwako Asanuma +11 more
2009Journal of Biological Chemistry147 citations Open access
Semantic Scholar
Human Leukocyte-derived Arginine Aminopeptidase
T. Tanioka, A. Hattori, Shinako Masuda, Y. Nomura +3 more
2003Journal of Biological Chemistry146 citations Open access
Semantic Scholar
Pretaporter, a Drosophila protein serving as a ligand for Draper in the phagocytosis of apoptotic cells
T. Kuraishi, Y. Nakagawa, K. Nagaosa, Yumi Hashimoto +11 more
2009EMBO Journal109 citations Open access
Semantic Scholar
The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9
M. Taoka, Yuko Nobe, Yuka Yamaki, Y. Yamauchi +4 more
2016Nucleic Acids Research105 citations Open access
Semantic Scholar
Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data
H. Nakayama, Misaki Akiyama, M. Taoka, Y. Yamauchi +4 more
2009Nucleic Acids Research102 citations Open access
Semantic Scholar
Polyester synthesis genes associated with stress resistance are involved in an insect–bacterium symbiosis
J. Kim, Y. Won, N. Nikoh, H. Nakayama +9 more
2013Proceedings of the National Academy of Sciences of the United States of America100 citations Open access
Semantic Scholar
Cryo-EM structure of the transposon-associated TnpB enzyme
R. Nakagawa, H. Hirano, Satoshi N. Omura, Suchita P. Nety +18 more
2023Nature99 citations Open access
Semantic Scholar
The Anticancer Natural Product Pironetin Selectively Targets Lys352 of α-Tubulin
T. Usui, H. Watanabe, H. Nakayama, Y. Tada +8 more
200495 citations Open access
Semantic Scholar
Purification of Polyglutamine Aggregates and Identification of Elongation Factor-1α and Heat Shock Protein 84 as Aggregate-Interacting Proteins
K. Mitsui, H. Nakayama, T. Akagi, Munenori Nekooki +4 more
2002Journal of Neuroscience95 citations Open access
Semantic Scholar
A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs
M. Taoka, Yuko Nobe, Masayuki Hori, Aiko Takeuchi +5 more
2015Nucleic Acids Research91 citations Open access
Semantic Scholar
Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes.
T. Ogawa, K. Noguchi, M. Saito, Yoshiko Nagahata +9 more
2013Journal of the American Chemical Society91 citations
Semantic Scholar
Mitochondrial Nucleoid and Transcription Factor A
T. Kanki, H. Nakayama, Narie Sasaki, K. Takio +3 more
2004Annals of the New York Academy of Sciences87 citations
Semantic Scholar
Site‐Specific Functionalization of Proteins by Organopalladium Reactions
Koichiro Kodama, S. Fukuzawa, H. Nakayama, K. Sakamoto +7 more
2007ChemBioChem86 citations
Semantic Scholar
Regioselective Carbon–Carbon Bond Formation in Proteins with Palladium Catalysis; New Protein Chemistry by Organometallic Chemistry
Koichiro Kodama, S. Fukuzawa, H. Nakayama, T. Kigawa +7 more
2006ChemBioChem86 citations Open access
Semantic Scholar
Only a Small Subset of the Horizontally Transferred Chromosomal Genes in Escherichia coli Are Translated into Proteins*S
M. Taoka, Y. Yamauchi, T. Shinkawa, H. Kaji +4 more
2004Molecular & Cellular Proteomics84 citations Open access
Semantic Scholar
Novel Bacterial Lipoprotein Structures Conserved in Low-GC Content Gram-positive Bacteria Are Recognized by Toll-like Receptor 2*
K. Kurokawa, Kyoung-Hwa Ryu, R. Ichikawa, A. Masuda +10 more
2012Journal of Biological Chemistry82 citations Open access
Semantic Scholar
Lipid moieties on lipoproteins of commensal and non-commensal staphylococci induce differential immune responses
Minh-Thu Nguyen, Julia Uebele, Nimerta Kumari, H. Nakayama +9 more
2017Nature Communications72 citations Open access
Semantic Scholar
TDP-43 stabilises the processing intermediates of mitochondrial transcripts
Keiichi Izumikawa, Yuko Nobe, Harunori Yoshikawa, Hideaki Ishikawa +13 more
2017Scientific Reports72 citations Open access
Semantic Scholar
Diversity of Innate Immune Recognition Mechanism for Bacterial Polymeric meso-Diaminopimelic Acid-type Peptidoglycan in Insects
Yang Yu, Ji-won Park, Hyun-Mi Kwon, Hyun-Ok Hwang +8 more
2010Journal of Biological Chemistry67 citations Open access
Semantic Scholar
Human Leukocyte-derived Arginine Aminopeptidase THE THIRD MEMBER OF THE OXYTOCINASE SUBFAMILY OF AMINOPEPTIDASES*
T. Tanioka, A. Hattori, Shinako Masuda, Yoshihiro Nomura +3 more
200367 citations
Semantic Scholar
Environment-Mediated Accumulation of Diacyl Lipoproteins over Their Triacyl Counterparts in Staphylococcus aureus
K. Kurokawa, Min-Su Kim, R. Ichikawa, Kyoung-Hwa Ryu +3 more
2012Journal of Bacteriology60 citations Open access
Semantic Scholar
An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes
M. Taoka, Y. Yamauchi, Yuko Nobe, Shunpei Masaki +4 more
2009Nucleic Acids Research57 citations Open access
Semantic Scholar
Structural evidence of α‐aminoacylated lipoproteins of Staphylococcus aureus
Miwako Asanuma, K. Kurokawa, R. Ichikawa, Kyoung-Hwa Ryu +4 more
2011The FEBS Journal53 citations Open access
Semantic Scholar
Insect Gut Symbiont Susceptibility to Host Antimicrobial Peptides Caused by Alteration of the Bacterial Cell Envelope*
J. Kim, D. Son, Chan-Hee Kim, Jae-Hyun Cho +9 more
2015Journal of Biological Chemistry51 citations Open access
Semantic Scholar
Denaturing reversed phase liquid chromatographic separation of non-coding ribonucleic acids on macro-porous polystyrene-divinylbenzene resins.
Y. Yamauchi, M. Taoka, Yuko Nobe, Keiichi Izumikawa +3 more
2013Journal of Chromatography A51 citations
Semantic Scholar
Thiocyanate hydrolase is a cobalt-containing metalloenzyme with a cysteine-sulfinic acid ligand.
Y. Katayama, Kanako Hashimoto, H. Nakayama, H. Mino +6 more
2006Journal of the American Chemical Society50 citations
Semantic Scholar
PRMT1 is required for RAP55 to localize to processing bodies
Ken Matsumoto, H. Nakayama, Mami Yoshimura, A. Masuda +3 more
2012RNA Biology48 citations Open access
Semantic Scholar
Direct identification of human cellular microRNAs by nanoflow liquid chromatography-high-resolution tandem mass spectrometry and database searching.
H. Nakayama, Y. Yamauchi, M. Taoka, T. Isobe
2015Analytical Chemistry47 citations Open access
Semantic Scholar
A novel inhibitor for Fe-type nitrile hydratase: 2-cyano-2-propyl hydroperoxide.
M. Tsujimura, M. Odaka, H. Nakayama, N. Dohmae +7 more
2003Journal of the American Chemical Society46 citations
Semantic Scholar
A mass spectrometry-based method for direct determination of pseudouridine in RNA
Y. Yamauchi, Yuko Nobe, Keiichi Izumikawa, D. Higo +5 more
2015Nucleic Acids Research43 citations Open access
Semantic Scholar
TDP-43 regulates site-specific 2′-O-methylation of U1 and U2 snRNAs via controlling the Cajal body localization of a subset of C/D scaRNAs
Keiichi Izumikawa, Yuko Nobe, Hideaki Ishikawa, Y. Yamauchi +6 more
2019Nucleic Acids Research42 citations Open access
Semantic Scholar
4‐Isoavenaciolide covalently binds and inhibits VHR, a dual‐specificity phosphatase
Kazunori Ueda, T. Usui, H. Nakayama, M. Ueki +3 more
2002FEBS Letters42 citations Open access
Semantic Scholar
High-resolution mass spectrometric determination of the synthetic cannabinoids MAM-2201, AM-2201, AM-2232, and their metabolites in postmortem plasma and urine by LC/Q-TOFMS
Zai-Tsu Kei, H. Nakayama, Mayumi Yamanaka, K. Hisatsune +8 more
2015Zeitschrift für Rechtsmedizin39 citations
Semantic Scholar
Identification of truncated forms of U1 snRNA reveals a novel RNA degradation pathway during snRNP biogenesis
Hideaki Ishikawa, Yuko Nobe, Keiichi Izumikawa, Harunori Yoshikawa +8 more
2013Nucleic Acids Research38 citations Open access
Semantic Scholar
Metabolome disruption of the rat cerebrum induced by the acute toxic effects of the synthetic cannabinoid MAM-2201.
Zai-Tsu Kei, Y. Hayashi, Kei-ichiro Suzuki, H. Nakayama +5 more
2015Life Science37 citations
Semantic Scholar
Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells
Hideaki Ishikawa, Harunori Yoshikawa, Keiichi Izumikawa, Y. Miura +7 more
2016Nucleic Acids Research36 citations Open access
Semantic Scholar
Structural basis for catalytic activation of thiocyanate hydrolase involving metal-ligated cysteine modification.
T. Arakawa, Y. Kawano, Y. Katayama, H. Nakayama +3 more
2009Journal of the American Chemical Society36 citations
Semantic Scholar
A novel method for the biosynthesis of deuterated proteins with selective protonation at the aromatic rings of Phe, Tyr and Trp
Sundaresan Rajesh, D. Nietlispach, H. Nakayama, K. Takio +3 more
2003Journal of Biomolecular NMR35 citations
Semantic Scholar
Positional isomer differentiation of synthetic cannabinoid JWH-081 by GC-MS/MS.
Maiko Kusano, Zai-Tsu Kei, H. Nakayama, J. Nakajima +6 more
2015Journal of Mass Spectrometry30 citations
Semantic Scholar
RNA Cytidine Acetyltransferase of Small-Subunit Ribosomal RNA: Identification of Acetylation Sites and the Responsible Acetyltransferase in Fission Yeast, Schizosaccharomyces pombe
M. Taoka, Daisuke Ishikawa, Yuko Nobe, Hideaki Ishikawa +6 more
2014PLoS ONE29 citations Open access
Semantic Scholar
Mutational Study on αGln90 of Fe-Type Nitrile Hydratase from Rhodococcus sp. N771
Hiromi Takarada, Y. Kawano, K. Hashimoto, H. Nakayama +6 more
2006Bioscience, biotechnology and biochemistry29 citations
Semantic Scholar
A method for direct mass spectrometry-based identification of mono-methylated RNA nucleoside positional isomers and its application to the analysis of Leishmania ribosomal RNA.
H. Nakayama, Y. Yamauchi, Yuko Nobe, Ko Sato +4 more
2019Analytical Chemistry26 citations Open access
Semantic Scholar

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