Sohyoung Kim

Most-cited papers

1. The Systems Biology Graphical Notation

   N. Le Novère, M. Hucka, H. Mi, S. Moodie +35 more

   2009Nature Biotechnology977 citations

   Semantic Scholar

   Save

2. Predicted Functions of MdmX in Fine-Tuning the Response of p53 to DNA Damage

   Sohyoung Kim, M. Aladjem, G. McFadden, K. Kohn

   2010PLoS Comput. Biol.197 citations Open access

   Semantic Scholar

   Save

3. Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling.

   S. Nishizuka, Sing-Tsung Chen, Fuad G. Gwadry, J. Alexander +19 more

   2003Cancer Research194 citations

   Semantic Scholar

   Save

4. Genome-wide binding potential and regulatory activity of the glucocorticoid receptor’s monomeric and dimeric forms

   T. A. Johnson, Ville Paakinaho, Sohyoung Kim, G. Hager +1 more

   2021Nature Communications60 citations Open access

   Semantic Scholar

   Save

5. Targeted H3R26 Deimination Specifically Facilitates Estrogen Receptor Binding by Modifying Nucleosome Structure

   Michael J. Guertin, Xue-Sen Zhang, L. Anguish, Sohyoung Kim +4 more

   2014PLoS Genetics56 citations Open access

   Semantic Scholar

   Save

6. Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells

   W. Reinhold, M. Reimers, A. Maunakea, Sohyoung Kim +13 more

   2007Molecular Cancer Therapeutics55 citations Open access

   Semantic Scholar

   Save

7. Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response

   Ruhul Amin, Anjali Shukla, J. J. Zhu, Sohyoung Kim +14 more

   2021Nature Communications50 citations Open access

   Semantic Scholar

   Save

8. The glucocorticoid receptor associates with the cohesin loader NIPBL to promote long-range gene regulation

   Lorenzo Rinaldi, Gregory Fettweis, Sohyoung Kim, David A. Garcia +10 more

   2022Science Advances43 citations Open access

   Semantic Scholar

   Save

9. Electrochemical evaluation of the reaction rate between methyl viologen mediator and diaphorase enzyme for the electrocatalytic reduction of NAD+ and digital simulation for its voltammetric responses

   Sohyoung Kim, S. Yun, C. Kang

   199940 citations

   Semantic Scholar

   Save

10. High Quality ATAC-Seq Data Recovered from Cryopreserved Breast Cell Lines and Tissue

    Saori Fujiwara, Songjoon Baek, L. Varticovski, Sohyoung Kim +1 more

    2019Scientific Reports31 citations Open access

    Semantic Scholar

    Save

11. The bioinformatics of microarray gene expression profiling.

    J. Weinstein, U. Scherf, Jae K. Lee, S. Nishizuka +10 more

    2002Cytometry31 citations Open access

    Semantic Scholar

    Save

12. An analysis of the class of gene regulatory functions implied by a biochemical model.

    J. Grefenstette, Sohyoung Kim, S. Kauffman

    2006Bio Systems29 citations

    Semantic Scholar

    Save

13. SMYD3 represses tumor-intrinsic interferon response in HPV-negative squamous cell carcinoma of the head and neck

    N. Nigam, B. Bernard, Samantha Sevilla, Sohyoung Kim +34 more

    2023Cell Reports26 citations Open access

    Semantic Scholar

    Save

14. HIV vaccine candidate efficacy in female macaques mediated by cAMP-dependent efferocytosis and V2-specific ADCC

    Massimiliano Bissa, Sohyoung Kim, V. Galli, S. Fourati +31 more

    2023Nature Communications24 citations Open access

    Semantic Scholar

    Save

15. Differential accumulation of transcripts for ACC synthase and ACC oxidase homologs in etiolated mung bean hypocotyls in response to various stimuli.

    Su-Jin Yu, Sohyoung Kim, June-Seung Lee, Dong-Hee Lee

    1998Molecules and Cells24 citations Open access

    Semantic Scholar

    Save

16. Erratum: The Systems Biology Graphical Notation

    N. Le Novère, M. Hucka, H. Mi, S. Moodie +35 more

    2009Nature Biotechnology20 citations Open access

    Semantic Scholar

    Save

17. Corticosterone pattern-dependent glucocorticoid receptor binding and transcriptional regulation within the liver

    B. Flynn, Matthew T. Birnie, Y. Kershaw, A. Pauža +9 more

    2021PLoS Genetics18 citations Open access

    Semantic Scholar

    Save

18. WHSC1 monomethylates histone H1 and induces stem-cell like features in squamous cell carcinoma of the head and neck

    V. Saloura, T. Vougiouklakis, R. Bao, Sohyoung Kim +9 more

    2020Neoplasia15 citations Open access

    Semantic Scholar

    Save

19. Effective asexual reproduction of a widespread soft coral: comparative assessment of four different fragmentation methods

    Sohyoung Kim, C. Wild, A. Tilstra

    2022PeerJ13 citations Open access

    Semantic Scholar

    Save

20. The formation of a diaphorase enzyme multilayer bound to a self-assembled monolayer for the mediated enzyme-catalyzed reduction of NAD+

    Sohyoung Kim, S. Yun, C. Kang

    199911 citations

    Semantic Scholar

    Save

21. Transcription factors form a ternary complex with NIPBL/MAU2 to localize cohesin at enhancers.

    Gregory Fettweis, Kaustubh Wagh, D. Stavreva, Alba Jiménez-Panizo +16 more

    2025Nucleic Acids Research7 citations Open access

    Semantic Scholar

    Save

22. Short-term ocean acidification decreases pulsation and growth of the widespread soft coral Xenia umbellata

    A. Tilstra, Lorena Braxator, Bianca M. Thobor, S. D. Mezger +5 more

    2023PLoS ONE7 citations Open access

    Semantic Scholar

    Save

23. Experimental Comparison of Symbolic Learning Programs For The Classification of Gene Network Topo

    Andreas D. Lattner, Sohyoung Kim, G. Cervone, J. Grefenstette

    20036 citations

    Semantic Scholar

    Save

24. Inference of large-scale topology of gene regulation networks by neural nets

    Sohyoung Kim, J. Weinstein, J. Grefenstette

    2003SMC'03 Conference Proceedings. 2003 IEEE International Conference on Systems, Man and Cybernetics. Conference Theme - System Security and Assurance (Cat. No.03CH37483)4 citations

    Semantic Scholar

    Save

25. Transcription factors form a ternary complex with NIPBL/MAU2 to localize cohesin at enhancers

    Gregory Fettweis, Kaustubh Wagh, D. Stavreva, Alba Jiménez-Panizo +15 more

    2024bioRxiv3 citations Open access

    Semantic Scholar

    Save

26. Nuclear Receptors Dynamics and Gene Regulation in Response to Ultradian Hormone Pulses

    D. Stavreva, Ho-Ang Le, Kaustubh Wagh, Hannah LaPoint +5 more

    2025Endocrinology1 citations

    Semantic Scholar

    Save

27. Abstract 2959: Investigating the oncogenic effects and mechanisms of the SMYD3 methyltransferase in HPV-negative head and neck squamous cell carcinoma

    M. Murali, Daniel Tsai, N. Nigam, K. Burkitt +3 more

    2022Cancer Research1 citations

    Semantic Scholar

    Save

28. Depletion of nuclear pore protein NUP210 suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response

    R. Amin, Anjali Shukla, J. J. Zhu, Sohyoung Kim +14 more

    2021bioRxiv1 citations Open access

    Semantic Scholar

    Save

29. Genome wide ChIP-Seq analysis of Glucocorticoid Receptor and RNA Polymerase 2 binding in rat liver during physiological and non-physiological corticosterone replacement

    B. Flynn, Matthew T. Birnie, Yvonne M. Kershaw, Songjoon Baek +5 more

    20161 citations

    Semantic Scholar

    Save

30. Abstract 4783: Novel molecular markers of bladder cancer progression identified by global chromatin profiling

    L. Varticovski, Sohyoung Kim, M. Nickerson, Bethtrice Thompson +7 more

    20151 citations

    Semantic Scholar

    Save

31. 8644 Dynamic Insights into Glucocorticoid Receptor Dysfunction: Novel patient-derived T437I Mutation and Its Impact on Glucocorticoid Receptor Function

    T. Tettey, Sohyoung Kim, Kaustubh Wagh, Q. Lao +6 more

    2024Journal of the Endocrine Society0 citations Open access

    Semantic Scholar

    Save

32. Abstract 6284: SUV420H1 as a novel target in HPV-negative head and neck squamous cell carcinoma

    Arfa Moshiri, Hui Cheng, Sohyoung Kim, V. Saloura

    2023Cancer Research0 citations

    Semantic Scholar

    Save

33. PD07-12 IDENTIFICATION OF CHROMATIN SIGNATURES PREDICTIVE OF PROSTATE CANCER PROGRESSION

    Michael Rothberg, J. Enders, Cheyenne Williams, Michael A. Daneshvar +14 more

    2022Journal of Urology0 citations

    Semantic Scholar

    Save

34. PD44-04 IDENTIFICATION OF CHROMATIN SIGNATURES PREDICTIVE OF PROSTATE CANCER PROGRESSION

    Cheyenne Williams, Michael A. Daneshvar, Nitin K. Yerram, Sohyoung Kim +15 more

    20210 citations

    Semantic Scholar

    Save

35. Abstract 2117: Immunomodulatory functions of SMYD3 in HPV-negative head and neck squamous cell carcinoma

    N. Nigam, B. Bernard, K. Burkitt, Sohyoung Kim +4 more

    2021Molecular and Cellular Biology/Genetics0 citations Open access

    Semantic Scholar

    Save

36. Targeting nuclear pore protein, NUP210, reduces metastasis through heterochromatin-mediated silencing of mechanosensitive genes

    R. Amin, Anjali Shukla, J. J. Zhu, Sohyoung Kim +11 more

    20200 citations Open access

    Semantic Scholar

    Save

37. Institutional Investors and Firms’ Payout Policy

    H. Choi, Sohyoung Kim

    2018International Business Review0 citations

    Semantic Scholar

    Save

38. Abstract 3352: Genome-wide enhancer identify signature predictive of metastatic phenotypes in bladder cancers

    Sohyoung Kim, L. Varticovski, Q. Lao, Songjoon Baek +8 more

    20170 citations

    Semantic Scholar

    Save

39. An integrated view of nuclear receptor/chromatin interactions: From genome wide to real time molecular dynamics

    G. Hager, Ville Paakinaho, Sohyoung Kim, Stephanie A. Morris +7 more

    20150 citations

    Semantic Scholar

    Save

40. Abstract 4782: Genome-wide chromatin profiling in bladder and prostate cancers

    Sohyoung Kim, L. Varticovski, Q. Lao, Songjoon Baek +7 more

    20150 citations

    Semantic Scholar

    Save

41. Bladder cancer global unbiased chromatin landscape characterization by DHS-seq to identify novel features unique for each stage of progression.

    L. Varticovski, Sohyoung Kim, M. Nickerson, Lars Grøntved +4 more

    20140 citations

    Semantic Scholar

    Save

42. Abstract 474: Changes in global chromatin landscape identify bladder cancer progression

    Sohyoung Kim, L. Varticovski, Lars Grøntved, Songjoon Baek +5 more

    20140 citations

    Semantic Scholar

    Save

43. E-cadherin promoter region methylation and its correlation with transcript level for the NCI-60 cancer cell lines

    W. Reinhold, Sohyoung Kim, C. Stewart, S. Lababidi +9 more

    20040 citations

    Semantic Scholar

    Save

44. Mechanisms and models of gene regulation

    Sohyoung Kim, J. Grefenstette

    20040 citations

    Semantic Scholar

    Save

45. A Spontaneous Growth of a Glucose Oxidase Enzyme Layer over an Aminoethanethiol Monolayer on a Gold Electrode for an Amperometric Glucose Sensor

    C. Kang, Sohyoung Kim, Hyosul Shin

    20010 citations

    Semantic Scholar

    Save

46. Isolation and sequence analysis of promoter DNA fragments of the Luciferin-binding protein gene inGonyaulax polyedra

    Sohyoung Kim, Heejung Lee, Dong-Hee Lee

    2000Journal of Plant Biology0 citations

    Semantic Scholar

    Save

47. Corrigendum : Multi-site assessment of the precision and reproducibility of multiple reaction monitoring – based measurements of proteins in plasma

    N. Le Novère, M. Hucka, H. Mi, S. Moodie +35 more

    0 citations

    Semantic Scholar

    Save