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J. Weinstein · SciRah

Researcher profile · Semantic Scholar

J. Weinstein

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J. Weinstein — researcher profile on SciRah

h-index: 112
Works: 374
Citations: 131K

Most-cited papers

The Immune Landscape of Cancer
V. Thorsson, D. Gibbs, S. Brown, D. Wolf +496 more
2018Immunity4,928 citations Open access
Semantic Scholar
Oncogenic Signaling Pathways in The Cancer Genome Atlas
F. Sánchez-Vega, M. Mina, J. Armenia, W. Chatila +496 more
2018Cell2,752 citations Open access
Semantic Scholar
Comprehensive molecular characterization of muscle invasive bladder cancer
A. G. Robertson, Jaegil Kim, H. Al-Ahmadie, J. Bellmunt +170 more
2017Cell2,406 citations Open access
Semantic Scholar
Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
A. Ally, M. Balasundaram, R. Carlsen, E. Chuah +232 more
2017Cell2,309 citations Open access
Semantic Scholar
Comprehensive Characterization of Cancer Driver Genes and Mutations
M. Bailey, C. Tokheim, E. Porta-Pardo, Sohini Sengupta +496 more
2018Cell2,066 citations Open access
Semantic Scholar
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M. Ceccarelli, F. Barthel, T. Malta, Thais S. Sabedot +202 more
2016Cell1,978 citations Open access
Semantic Scholar
Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
T. Malta, A. Sokolov, A. Gentles, T. Burzykowski +19 more
2018Cell1,907 citations Open access
Semantic Scholar
Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
Benjamin J. Raphael, R. Hruban, Andrew J. Aguirre, R. Moffitt +262 more
2017Cancer Cell1,752 citations Open access
Semantic Scholar
Comprehensive molecular portraits of invasive lobular breast cancer
G. Ciriello, M. Gatza, Andrew H. Beck, M. Wilkerson +137 more
2015Cell1,737 citations Open access
Semantic Scholar
Integrated genomic and molecular characterization of cervical cancer
R. Burk, Zi-Gui Chen, C. Saller, Katherine Tarvin +297 more
2017Nature1,275 citations Open access
Semantic Scholar
A Consensus Molecular Classification of Muscle-invasive Bladder Cancer
A. Kamoun, A. de Reyniès, Yves Allory, G. Sjödahl +38 more
2019European Urology1,187 citations Open access
Semantic Scholar
Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas
Joshua D. Campbell, Anton Alexandrov, Jaegil Kim, J. Wala +26 more
2016Nature Genetics1,122 citations Open access
Semantic Scholar
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
T. Knijnenburg, Ling-Hua Wang, M. Zimmermann, N. Chambwe +34 more
2018Cell Reports982 citations Open access
Semantic Scholar
COMPREHENSIVE AND INTEGRATED GENOMIC CHARACTERIZATION OF ADULT SOFT TISSUE SARCOMAS
A. Abeshouse, C. Adebamowo, S. Adebamowo, R. Akbani +260 more
2017Cell950 citations Open access
Semantic Scholar
Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas
L. Donehower, T. Soussi, A. Korkut, Yue-Xin Liu +9 more
2019Cell Reports568 citations Open access
Semantic Scholar
A comprehensive Pan-Cancer molecular study of gynecologic and breast cancers
Ashton C. Berger, A. Korkut, R. Kanchi, A. Hegde +44 more
2018Cancer Cell566 citations Open access
Semantic Scholar
A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations
Yi-Qun Zhang, P. Ng, M. Kucherlapati, Feng-Ju Chen +38 more
2017Cancer Cell557 citations Open access
Semantic Scholar
TANRIC: An interactive open platform to explore the function of lncRNAs in cancer
Jun Li, Leng Han, P. Roebuck, L. Diao +4 more
2015Cancer Research476 citations Open access
Semantic Scholar
Integrated Molecular Characterization of Uterine Carcinosarcoma
A. Cherniack, Hui Shen, Vonn Walter, Chip Stewart +15 more
2017Cancer Cell413 citations Open access
Semantic Scholar
Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
Hoon Kim, Si-Yuan Zheng, S. Amini, S. Virk +19 more
2015Genome Research389 citations Open access
Semantic Scholar
The integrated genomic landscape of thymic epithelial tumors
M. Radovich, C. Pickering, I. Felau, G. Ha +183 more
2018Cancer Cell365 citations Open access
Semantic Scholar
Meta-Analysis of the Luminal and Basal Subtypes of Bladder Cancer and the Identification of Signature Immunohistochemical Markers for Clinical Use
V. Dadhania, Miao Zhang, Li Zhang, J. Bondaruk +12 more
2016EBioMedicine343 citations Open access
Semantic Scholar
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
Joshua D. Campbell, C. Yau, R. Bowlby, Yue-Xin Liu +56 more
2018Cell Reports319 citations Open access
Semantic Scholar
The Immune Landscape of Cancer.
V. Thorsson, D. Gibbs, S. Brown, D. Wolf +53 more
2019Immunity287 citations Open access
Semantic Scholar
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
Xin-Xin Peng, Zhong-Yuan Chen, F. Farshidfar, Xiao-Yan Xu +17 more
2018Cell Reports273 citations Open access
Semantic Scholar
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
Han Chen, Chunyan Li, Xin-Xin Peng, Zhi-Cheng Zhou +2 more
2018Cell256 citations Open access
Semantic Scholar
Assessment of Luminal and Basal Phenotypes in Bladder Cancer
Charles C. Guo, J. Bondaruk, Hui Yao, Zi-Qiao Wang +17 more
2020Scientific Reports158 citations Open access
Semantic Scholar
A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily
A. Korkut, S. Zaidi, R. Kanchi, Shuyun Rao +41 more
2018Cell Systems155 citations Open access
Semantic Scholar
Gene Expression Profile of the Clinically Aggressive Micropapillary Variant of Bladder Cancer
Charles C. Guo, V. Dadhania, Li Zhang, Tadeusz Majewski +15 more
2016European Urology148 citations Open access
Semantic Scholar
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
V. Cardinale, E. Gaudio, D. Alvaro, A. Franchitto +196 more
2017Cell Reports146 citations Open access
Semantic Scholar
Invasive Bladder Cancer: Genomic Insights and Therapeutic Promise
Jaegil Kim, R. Akbani, C. Creighton, S. Lerner +3 more
2015Clinical Cancer Research129 citations Open access
Semantic Scholar
ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments
Di Du, L. Tan, Yu-Meng Wang, Bo Peng +4 more
2019BMC Bioinformatics110 citations Open access
Semantic Scholar
Explore, Visualize and Analyze Functional Cancer Proteomic Data Using The Cancer Proteome Atlas
Jun Li, R. Akbani, Wei Zhao, Yi-Ling Lu +3 more
2017Cancer Research104 citations Open access
Semantic Scholar
Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps
Michael C. Ryan, Mark Stucky, C. Wakefield, James M. Melott +3 more
2019F1000Research96 citations Open access
Semantic Scholar
Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas.
L. Donehower, T. Soussi, A. Korkut, Yue-Xin Liu +9 more
2019Cell Reports90 citations Open access
Semantic Scholar
Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer
A. G. Robertson, Jaegil Kim, H. Al-Ahmadie, J. Bellmunt +38 more
2018Cell83 citations Open access
Semantic Scholar
TransVar: a trans-level variant annotator for precision genomics
Wan-Ding Zhou, Teng-Hui Chen, Z. Chong, M. A. Rohrdanz +7 more
2015Nature Methods83 citations Open access
Semantic Scholar
Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers
Zhao Zhang, Youqiong Ye, Jing Gong, H. Ruan +8 more
2018Communications Biology81 citations Open access
Semantic Scholar
Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype
G. Johanning, G. Malouf, Xiao-Feng Zheng, F. Esteva +3 more
2017Scientific Reports79 citations Open access
Semantic Scholar
Glutaminase activity of L-asparaginase contributes to durable preclinical activity against acute lymphoblastic leukemia
Wai-Kin Chan, Thomas D. Horvath, L. Tan, T. Link +11 more
2019Molecular Cancer Therapeutics64 citations Open access
Semantic Scholar
Altered Expression and Splicing of ESRP1 in Malignant Melanoma Correlates with Epithelial–Mesenchymal Status and Tumor-Associated Immune Cytolytic Activity
Jun Yao, O. Caballero, Ying Huang, Calvin Lin +7 more
2016Cancer immunology research62 citations
Semantic Scholar
The mechanism of catalysis by L-asparaginase.
J. Lubkowski, Juan M. Vanegas, Wai-Kin Chan, P. Lorenzi +6 more
2020Biochemistry55 citations
Semantic Scholar
Ether phospholipids are required for mitochondrial reactive oxygen species homeostasis
Ziheng Chen, I-Lin Ho, M. Soeung, Er-Yen Yen +23 more
2023Nature Communications48 citations Open access
Semantic Scholar
NSD1 Inactivation and SETD2 Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas
Xiao-Ping Su, Jian-Ping Zhang, R. Mouawad, E. Compérat +14 more
2017Cancer Research46 citations Open access
Semantic Scholar
Urothelial-to-Neural Plasticity Drives Progression to Small Cell Bladder Cancer
Guo-Liang Yang, J. Bondaruk, D. Cogdell, Zi-Qiao Wang +22 more
2020iScience44 citations Open access
Semantic Scholar
A Galaxy implementation of next-generation clustered heat maps for interactive exploration of molecular profiling data
B. Broom, Michael C. Ryan, Robert Brown, F. Ikeda +7 more
2017Cancer Research41 citations Open access
Semantic Scholar
Catalytic Role of the Substrate Defines Specificity of Therapeutic l-Asparaginase.
A. Anishkin, Juan M. Vanegas, D. Rogers, P. Lorenzi +5 more
2015Journal of Molecular Biology32 citations Open access
Semantic Scholar
A user guide for the online exploration and visualization of PCAWG data
M. Goldman, Junjun Zhang, Nuno A. Fonseca, I. Cortés-Ciriano +20 more
2020Nature Communications29 citations Open access
Semantic Scholar
The origin of bladder cancer from mucosal field effects
J. Bondaruk, R. Jaksik, Zi-Qiao Wang, D. Cogdell +22 more
2021bioRxiv24 citations Open access
Semantic Scholar
Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations
Yunyun Jiang, G. Malouf, Jian-Ping Zhang, Xiao-Feng Zheng +10 more
2015OncoTarget24 citations Open access
Semantic Scholar

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