Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Hanlee P. Ji · SciRah

Researcher profile · Semantic Scholar

Hanlee P. Ji

Share profile

Hanlee P. Ji — researcher profile on SciRah

h-index: 44
Works: 248
Citations: 13K

Most-cited papers

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
José Alquicira-Hernández, Anuja Sathe, Hanlee P. Ji, Q. Nguyen +1 more
2019Genome Biology416 citations Open access
Semantic Scholar
The Human Pangenome Project: a global resource to map genomic diversity
Ting Wang, L. Antonacci-Fulton, K. Howe, Heather A. Lawson +34 more
2022Nature404 citations Open access
Semantic Scholar
Single cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment
Anuja Sathe, Susan M. Grimes, Billy T. Lau, Jiamin Chen +4 more
2019Clinical Cancer Research324 citations Open access
Semantic Scholar
Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts
Anuja Sathe, Kaishu Mason, S. Grimes, Zilu Zhou +10 more
2020bioRxiv182 citations Open access
Semantic Scholar
An expanded universe of cancer targets
W. Hahn, J. Bader, Theodore P. Braun, A. Califano +121 more
2021Cell178 citations Open access
Semantic Scholar
Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints.
Noemi Andor, E. Simonds, D. Czerwinski, Jiamin Chen +8 more
2019Blood108 citations Open access
Semantic Scholar
Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution
Noemi Andor, Billy T. Lau, C. Catalanotti, Anuja Sathe +8 more
2020NAR Genomics and Bioinformatics90 citations Open access
Semantic Scholar
Improved read/write cost tradeoff in DNA-based data storage using LDPC codes
Shubham Chandak, Hanlee P. Ji, Kedar Tatwawadi, Billy T. Lau +6 more
2019bioRxiv84 citations Open access
Semantic Scholar
Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing
Billy T. Lau, A. Almeda, Marie C. Schauer, M. McNamara +7 more
2022bioRxiv83 citations Open access
Semantic Scholar
The COVID-19 XPRIZE and the need for scalable, fast, and widespread testing
Matthew Mackay, Anna C. Hooker, Ebrahim Afshinnekoo, M. Salit +16 more
2020Nature Biotechnology76 citations Open access
Semantic Scholar
Single Cell Analysis Can Define Distinct Evolution of Tumor Sites in Follicular Lymphoma.
S. Haebe, Tanaya Shree, Anuja Sathe, Grady Day +8 more
2021Blood74 citations Open access
Semantic Scholar
Transitioning single-cell genomics into the clinic
Jennifer Lim, Venessa T. Chin, K. Fairfax, C. Moutinho +3 more
2023Nature reviews genetics72 citations
Semantic Scholar
Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2
Bo Zhou, Steve S. Ho, S. Greer, N. Spies +14 more
2019Nucleic Acids Research60 citations Open access
Semantic Scholar
Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer
Chi-Yun Wu, Billy T. Lau, Heonseok Kim, Anuja Sathe +3 more
2021Nature Biotechnology56 citations Open access
Semantic Scholar
New Approaches to Moderate CRISPR-Cas9 Activity: Addressing Issues of Cellular Uptake and Endosomal Escape.
Maja van Hees, S. Slott, A. Hansen, H. Kim +2 more
2021Molecular Therapy40 citations Open access
Semantic Scholar
A deep learning model for molecular label transfer that enables cancer cell identification from histopathology images
Andrew Su, Hojoon Lee, Xiao Tan, Carlos J. Suarez +3 more
2021bioRxiv36 citations Open access
Semantic Scholar
Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells
H. Kim, S. Grimes, Tianqi Chen, Anuja Sathe +4 more
2023Nature Biotechnology31 citations Open access
Semantic Scholar
Pepsinogens and Gastrin Demonstrate Low Discrimination for Gastric Precancerous Lesions in a Multi-Ethnic United States Cohort.
R. Huang, Sungho Park, Jeanne Shen, T. Longacre +2 more
2021Clinical Gastroenterology and Hepatology28 citations
Semantic Scholar
A functional CRISPR/Cas9 screen identifies kinases that modulate FGFR inhibitor response in gastric cancer
Jiamin Chen, J. Bell, Billy T. Lau, T. Whittaker +2 more
2019Oncogenesis28 citations Open access
Semantic Scholar
A Summary of the 2020 Gastric Cancer Summit at Stanford University
R. Huang, H. Koh, J. Hwang, C. Abnet +31 more
2020Gastroenterology27 citations Open access
Semantic Scholar
Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies
Billy T. Lau, Dmitri S. Pavlichin, Anna C. Hooker, A. Almeda +7 more
2021Genome Medicine26 citations Open access
Semantic Scholar
GITR and TIGIT immunotherapy provokes divergent multicellular responses in the tumor microenvironment of gastrointestinal cancers
Anuja Sathe, Carlos Ayala, Xiang-Qi Bai, Susan M. Grimes +5 more
2023Genome Medicine25 citations Open access
Semantic Scholar
One Size Does Not Fit All: Marked Heterogeneity in Incidence of and Survival from Gastric Cancer among Asian American Subgroups
R. Huang, Nora Sharp, Ruth Talamoa, Hanlee P. Ji +2 more
2020Cancer Epidemiology, Biomarkers and Prevention25 citations
Semantic Scholar
Characterization of the consensus mucosal microbiome of colorectal cancer
Lan Zhao, S. Grimes, S. Greer, Matthew Kubit +3 more
2021bioRxiv20 citations Open access
Semantic Scholar
Magnetic DNA random access memory with nanopore readouts and exponentially-scaled combinatorial addressing
Billy T. Lau, Shubham Chandak, Sharmili Roy, Kedar Tatwawadi +3 more
2021bioRxiv20 citations Open access
Semantic Scholar
Tumor-associated microbiome features of metastatic colorectal cancer and clinical implications
H. An, Mira Partha, Hojoon Lee, Billy T. Lau +5 more
2024Frontiers in Oncology16 citations Open access
Semantic Scholar
Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing
H. Kim, S. Grimes, Anna C. Hooker, Billy T. Lau +1 more
2021Genome Biology16 citations Open access
Semantic Scholar
Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes
GiWon Shin, S. Greer, L. Xia, Hojoon Lee +3 more
2019Nucleic Acids Research16 citations Open access
Semantic Scholar
Therapeutic Monitoring of Circulating DNA Mutations in Metastatic Cancer with Personalized Digital PCR.
Christina M. Wood-Bouwens, Derrick S. Haslem, Bryce Moulton, A. Almeda +4 more
2019Journal of Molecular Diagnostics15 citations Open access
Semantic Scholar
ALTEN: A High‐Fidelity Primary Tissue‐Engineering Platform to Assess Cellular Responses Ex Vivo
Andrew M. K. Law, Jiamin Chen, Yolanda Colino-Sanguino, Laura Rodriguez de la Fuente +21 more
2022Advancement of science14 citations Open access
Semantic Scholar
Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8
GiWon Shin, S. Greer, E. Hopmans, S. Grimes +7 more
2020Genome Medicine14 citations Open access
Semantic Scholar
Germline variants of ATG7 in familial cholangiocarcinoma alter autophagy and p62
S. Greer, Jiamin Chen, M. H. Ogmundsdottir, Carlos Ayala +13 more
2022Scientific Reports13 citations Open access
Semantic Scholar
Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer
Chi-Yun Wu, Billy T. Lau, Heonseok Kim, Anuja Sathe +3 more
2020bioRxiv12 citations Open access
Semantic Scholar
Unique k-mer sequences for validating cancer-related substitution, insertion and deletion mutations
Hojoon Lee, Ahmed Shuaibi, J. Bell, Dmitri S. Pavlichin +1 more
2020bioRxiv12 citations Open access
Semantic Scholar
Follicular lymphoma evolves with a surmountable dependency on acquired glycosylation motifs in the B cell receptor.
S. Haebe, Grady Day, D. Czerwinski, Anuja Sathe +8 more
2023Blood11 citations Open access
Semantic Scholar
Single cell and spatial alternative splicing analysis with long read sequencing
Yuntian Fu, H. Kim, J. I. Adams, S. Grimes +6 more
2023bioRxiv10 citations Open access
Semantic Scholar
Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data
Chi-Yun Wu, Anuja Sathe, Jiazhen Rong, P. Hess +4 more
2022bioRxiv10 citations Open access
Semantic Scholar
Exploratory Genomic Analysis of High Grade Neuroendocrine Neoplasms Across Diverse Primary Sites
T. Sun, Lan Zhao, P. Van Hummelen, B. Martin +6 more
2022Endocrine-Related Cancer9 citations Open access
Semantic Scholar
Structural variant analysis for linked-read sequencing data with gemtools
S. Greer, Hanlee P. Ji
2019Bioinform.9 citations Open access
Semantic Scholar
A spatially mapped gene expression signature for intestinal stem-like cells identifies high-risk precursors of gastric cancer
R. Huang, Ignacio A. Wichmann, Andrew Su, Anuja Sathe +10 more
2023bioRxiv8 citations Open access
Semantic Scholar
Predictive Model to Guide Brain Magnetic Resonance Imaging Surveillance in Patients With Metastatic Lung Cancer: Impact on Real-World Outcomes
J. Wu, V. Ding, Sophia J. Luo, E. Choi +11 more
2022JCO Precision Oncology8 citations Open access
Semantic Scholar
Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer
L. Xia, P. Van Hummelen, Matthew Kubit, Hojoon Lee +10 more
2019Scientific Reports8 citations Open access
Semantic Scholar
Resolving the 22q11.2 deletion using CTLR-Seq reveals chromosomal rearrangement mechanisms and individual variance in breakpoints
Bo Zhou, C. Purmann, Hanmin Guo, GiWon Shin +13 more
2024Proceedings of the National Academy of Sciences of the United States of America7 citations Open access
Semantic Scholar
Ultra-fast detection and quantification of nucleic acids by amplification-free fluorescence assay.
Jesper Uhd, Laura Miotke, Hanlee P. Ji, M. Dunaeva +8 more
2020In Analysis7 citations Open access
Semantic Scholar
Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing
H. Kim, S. Grimes, Anna C. Hooker, Billy T. Lau +1 more
2021Genome Biology6 citations Open access
Semantic Scholar
Single-cell multi-gene identification of somatic mutations and gene rearrangements in cancer
S. Grimes, H. Kim, Sharmili Roy, Anuja Sathe +8 more
2023NAR Cancer5 citations Open access
Semantic Scholar
Dissecting Cellular Heterogeneity using Single-cell RNA Sequencing
A. Sat, Hanlee P. Ji
20195 citations
Semantic Scholar
Site to Site Comparison of Follicular Lymphoma Biopsies By Single Cell RNA Sequencing
S. Haebe, Tanaya Shree, Anuja Sathe, Grady Day +5 more
2019Blood5 citations Open access
Semantic Scholar
A clinical trial of therapeutic vaccination in lymphoma with serial tumor sampling and single-cell analysis
Tanaya Shree, S. Haebe, D. Czerwinski, Erik Eckhert +14 more
2023Blood Advances4 citations Open access
Semantic Scholar
Genetic risk of cholangiocarcinoma is linked to the autophagy gene ATG7
S. Greer, M. H. Ogmundsdottir, Jiamin Chen, Billy T. Lau +12 more
2019bioRxiv4 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

Billy T. Lau×19
Invite
Billy T. Lau — researcher profile on SciRah
S. Grimes×18
Invite
S. Grimes — researcher profile on SciRah
Anuja Sathe×17
Invite
Anuja Sathe — researcher profile on SciRah
Hojoon Lee×13
Invite
Hojoon Lee — researcher profile on SciRah

×10

Invite

S. Greer — researcher profile on SciRah

Invite

R. Huang — researcher profile on SciRah

Invite

A. Almeda — researcher profile on SciRah

Invite

H. Kim — researcher profile on SciRah

Susan M. Grimes×5

Invite

Susan M. Grimes — researcher profile on SciRah

Invite

Jiamin Chen — researcher profile on SciRah

Carlos J. Suarez×5

Invite

Carlos J. Suarez — researcher profile on SciRah

Xiang-Qi Bai×5

Invite

Xiang-Qi Bai — researcher profile on SciRah