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D. Knights · SciRah

Researcher profile · Semantic Scholar

D. Knights

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D. Knights — researcher profile on SciRah

h-index: 9
Works: 22
Citations: 878

Most-cited papers

Chemotherapy‐driven dysbiosis in the intestinal microbiome
E. Montassier, T. Gastinne, P. Vangay, G. Al-Ghalith +7 more
2015Alimentary Pharmacology and Therapeutics463 citations Open access
Semantic Scholar
Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment
Michael B. Burns, Joshua Lynch, Timothy K. Starr, D. Knights +1 more
2014Genome Medicine214 citations Open access
Semantic Scholar
Cardiometabolic benefits of a non-industrialized-type diet are linked to gut microbiome modulation.
Fuyong Li, Anissa M. Armet, K. Korpela, Junhong Liu +22 more
2025Cell64 citations Open access
Semantic Scholar
Publisher Correction: Enterotypes in the landscape of gut microbial community composition
P. Costea, F. Hildebrand, M. Arumugam, F. Bäckhed +25 more
2018Nature Microbiology27 citations Open access
Semantic Scholar
Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk
Pamela Ferretti, Mattea Allert, Kelsey E. Johnson, Marco Rossi +8 more
2024bioRxiv21 citations Open access
Semantic Scholar
Human cytomegalovirus in breast milk is associated with milk composition and the infant gut microbiome and growth
Kelsey E. Johnson, Nelmary Hernandez-Alvarado, Mark Blackstad, Timothy J. Heisel +12 more
2024Nature Communications17 citations Open access
Semantic Scholar
Successful weight regain attenuation by autologous fecal microbiota transplantation is associated with non-core gut microbiota changes during weight loss; randomized controlled trial
Omer Kamer, E. Rinott, G. Tsaban, Alon Kaplan +18 more
2023Gut microbes17 citations Open access
Semantic Scholar
Maternal oral probiotic use is associated with decreased breastmilk inflammatory markers, infant fecal microbiome variation, and altered recognition memory responses in infants—a pilot observational study
Sara Gonia, Timothy J. Heisel, Neely C Miller, Jacob Haapala +9 more
2024Frontiers in Nutrition14 citations
Semantic Scholar
Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome
Kelsey E. Johnson, Timothy J. Heisel, Mattea Allert, Annalee J. Furst +11 more
2024Cell Genomics13 citations Open access
Semantic Scholar
A Randomized Pilot Study of Time-Restricted Eating Shows Minimal Microbiome Changes
Abigail J. Johnson, Alison C. Alvear, D. Knights, Lisa S. Chow +1 more
2025Nutrients8 citations
Semantic Scholar
Sugar-rich foods exacerbate antibiotic-induced microbiome injury
Angi Dai, P. Adintori, Tyler Funnell, William Jogia +35 more
2024bioRxiv5 citations Open access
Semantic Scholar
Metagenomic source tracking after microbiota transplant therapy
Susan L. Hoops, Daphne M Moutsoglou, Byron P. Vaughn, Alexander Khoruts +1 more
2025Gut microbes4 citations
Semantic Scholar
Industrialized human gut microbiota increases CD8+ T cells and mucus thickness in humanized mouse gut
P. Vangay, Tonya L. Ward, S. Lucas, L. Beura +8 more
2023Gut microbes4 citations Open access
Semantic Scholar
LMdist: Local Manifold distance accurately measures beta diversity in ecological gradients
Susan L. Hoops, D. Knights
2023Bioinform.4 citations Open access
Semantic Scholar
Shared environments can facilitate microbial transmission and alter metabolic outcomes
I. Comba, S. Hoops, L. Till, P. Vangay +7 more
2025Gut microbes2 citations Open access
Semantic Scholar
Mechanistic insights into microbiome-dependent and personalized responses to dietary fibre in a randomized controlled trial
Anissa M. Armet, Fuyong Li, E. Deehan, Daria D Nikolaeva +24 more
2025medRxiv2 citations
Semantic Scholar
Sugar-rich foods exacerbate antibiotic-induced microbiome disruption
An-Qi Dai, Annamaria Ballweg, William Jogia, Madhumitha Rangesa +40 more
2026Nature1 citations Open access
Semantic Scholar
607-P: Associations of Gut Microbiome with Glycemic Control in a Carbohydrate-Restricted, High-Protein Diet for Type 2 Diabetes Mellitus
Susan L. Hoops, D. Knights, A. Bantle
2024Diabetes1 citations
Semantic Scholar
Author Correction: Shallow shotgun sequencing reduces technical variation in microbiome analysis
Alex La Reau, Noah B. Strom, Ellen Filvaroff, Konstantinos Mavrommatis +2 more
2024Scientific Reports0 citations Open access
Semantic Scholar
Nutrition As a Predictor of Microbiome Injury in Allo-HCT
An-Qi Dai, P. Adintori, M. Docampo, J. Slingerland +15 more
2021Transplantation and Cellular Therapy0 citations Open access
Semantic Scholar
Probiotic supplementation accelerates gut microbiome maturation and reduces intestinal 1 inflammation in extremely preterm infants 2 3
Jumana Samara, S. Moossavi, B. Alshaikh, Van A. Ortega +17 more
20210 citations
Semantic Scholar
Loyola eCommons Loyola eCommons
S. Priya, Michael B. Burns, Tonya Ward, R. Mars +5 more
0 citations
Semantic Scholar

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