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C. Fraser · SciRah

Researcher profile · Semantic Scholar

C. Fraser

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C. Fraser — researcher profile on SciRah

h-index: 11
Works: 52
Citations: 638

Most-cited papers

Prevalence of persistent SARS-CoV-2 in a large community surveillance study
M. Ghafari, Matthew D. Hall, T. Golubchik, D. Ayoubkhani +29 more
2024Nature138 citations Open access
Semantic Scholar
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
C. Wymant, F. Blanquart, T. Golubchik, A. Gall +28 more
2018Virus Evolution96 citations Open access
Semantic Scholar
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
F. Blanquart, C. Wymant, M. Cornelissen, A. Gall +26 more
2017PLoS Biology65 citations Open access
Semantic Scholar
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts
L. Ferretti, C. Wymant, James I. Petrie, Daphne Tsallis +10 more
2023Nature50 citations Open access
Semantic Scholar
Early Analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein
T. Golubchik, K. Lythgoe, Matthew D. Hall, L. Ferretti +10 more
2021medRxiv50 citations Open access
Semantic Scholar
Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda
M. Monod, A. Brizzi, R. Galiwango, R. Ssekubugu +31 more
2023Nature Microbiology30 citations Open access
Semantic Scholar
Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions
J. Panovska-Griffiths, B. Swallow, R. Hinch, J. Cohen +12 more
2022Philosophical Transactions of the Royal Society A25 citations Open access
Semantic Scholar
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements
M. Kendall, L. Ferretti, C. Wymant, Daphne Tsallis +9 more
2024Science23 citations Open access
Semantic Scholar
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey
K. Lythgoe, T. Golubchik, Matthew D. Hall, T. House +27 more
2023Proceedings of the Royal Society B22 citations Open access
Semantic Scholar
Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages across Villages in Botswana Treatment-as-Prevention Trial.
V. Novitsky, M. Zahralban-Steele, S. Moyo, Tapiwa Nkhisang +46 more
2020Journal of Infectious Diseases19 citations Open access
Semantic Scholar
Evaluation of Phylogenetic Methods for Inferring the Direction of Human Immunodeficiency Virus (HIV) Transmission: HIV Prevention Trials Network (HPTN) 052
Yinfeng Zhang, C. Wymant, Oliver Laeyendecker, Kate Grabowski +19 more
202111 citations
Semantic Scholar
Modelling the effectiveness and social costs of daily lateral flow antigen tests versus quarantine in preventing onward transmission of COVID-19 from traced contacts
L. Ferretti, C. Wymant, A. Nurtay, Le-Le Zhao +10 more
2021medRxiv11 citations Open access
Semantic Scholar
Learning patterns of HIV-1 resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning
A. B. Igiraneza, P. Zacharopoulou, R. Hinch, C. Wymant +3 more
2024PLoS Computational Biology10 citations Open access
Semantic Scholar
Lineage replacement and evolution captured by the United Kingdom Covid Infection Survey
K. Lythgoe, T. Golubchik, Matthew D. Hall, T. House +26 more
2022medRxiv10 citations Open access
Semantic Scholar
Recombination Analysis of Near Full-Length HIV-1 Sequences and the Identification of a Potential New Circulating Recombinant Form from Rakai, Uganda
A. Capoferri, S. Lamers, M. Grabowski, R. Rose +36 more
2020AIDS Research and Human Retroviruses10 citations Open access
Semantic Scholar
A comprehensive genomics solution for HIV surveillance and clinical monitoring in a global health setting
D. Bonsall, T. Golubchik, M. de Cesare, Mohammed Limbada +17 more
2018bioRxiv10 citations Open access
Semantic Scholar
Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022
R. Hinch, J. Panovska-Griffiths, Thomas Ward, A. Charlett +2 more
2024Scientific Reports8 citations Open access
Semantic Scholar
Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study
Matthew D. Hall, T. Golubchik, D. Bonsall, L. Abeler-Dörner +82 more
2023The Lancet Microbe8 citations Open access
Semantic Scholar
HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data
T. Golubchik, L. Abeler-Dörner, Matthew D. Hall, C. Wymant +45 more
2025BMC Bioinformatics7 citations Open access
Semantic Scholar
Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity
L. Ferretti, T. Golubchik, F. Di Lauro, M. Ghafari +4 more
2025bioRxiv5 citations Open access
Semantic Scholar
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data
Zeng-Miao Wang, Peng Yang, Ruixue Wang, L. Ferretti +10 more
2024Nature Communications4 citations Open access
Semantic Scholar
Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study
Seungwon Kim, G. Kigozi, Michael A. Martin, R. Galiwango +15 more
2024Virus Evolution4 citations Open access
Semantic Scholar
Unpacking sources of transmission in HIV prevention trials with deep-sequence pathogen data
Lerato E. Magosi, E. Tchetgen, Vlad Novitsky, Molly Pretorius-Holme +13 more
2026Nature Communications3 citations Open access
Semantic Scholar
HIV drug resistance during antiretroviral therapy scale-up in Uganda, 2012–19: a population-based, longitudinal study
Michael A. Martin, S. Reynolds, Brian Foley, F. Nalugoda +14 more
2025The Lancet Microbe3 citations Open access
Semantic Scholar
Estimates of HIV-1 within-host recombination rates across the whole genome
Harriet Longley, D. Bonsall, Joshua T. Herbeck, G. Macintyre-Cockett +7 more
2025Virus Evolution2 citations
Semantic Scholar
Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda
Seungwon Kim, G. Kigozi, Michael A. Martin, R. Galiwango +15 more
2024medRxiv2 citations Open access
Semantic Scholar
Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples
Le-Le Zhao, Matthew D. Hall, C. Wymant, L. Abeler-Dörner +11 more
2023bioRxiv2 citations Open access
Semantic Scholar
Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 lineages circulating in Brazil; an exploratory analysis of a randomised controlled trial
S. C. Clemens, P. Folegatti, Katherine Emary, L. Weckx +24 more
20212 citations Open access
Semantic Scholar
Natural selection driven by escape from shifting antibody classes shapes SARS-CoV-2 evolution
C. Hamilton, M. Ghafari, A. Ledda, K. Lythgoe +2 more
2026bioRxiv1 citations Open access
Semantic Scholar
Patterns of HIV-1 Viral Load Suppression and Drug Resistance During the Dolutegravir Transition: A Population-based Longitudinal Study
Michael A. Martin, A. Blenkinsop, Michelle Moffa, S. Reynolds +19 more
2026Clinical Infectious Diseases1 citations Open access
Semantic Scholar
Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data
Michael A. Martin, A. Brizzi, Xiaoyue Xi, R. Galiwango +15 more
2025PLoS Pathogens1 citations Open access
Semantic Scholar
Evaluating the biomedical and behavioural drivers of HIV-1 incidence decline in adolescent girls and young women in Uganda: A mathematical modelling study
A. Akullian, V. Ssempijja, D. Bridenbecker, F. Nalugoda +18 more
2025medRxiv1 citations Open access
Semantic Scholar
Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution
Harriet Longley, C. Fraser, C. Wymant, K. Lythgoe
2025bioRxiv1 citations Open access
Semantic Scholar
Patterns of HIV-1 viral load suppression and drug resistance during the dolutegravir transition: a population-based longitudinal study
Michael A. Martin, A. Blenkinsop, Michelle Moffa, S. Reynolds +19 more
2025medRxiv1 citations Open access
Semantic Scholar
Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage.
A. Brizzi, J. Kagaayi, R. Ssekubugu, L. Abeler-Dörner +16 more
2025International Journal of Epidemiology1 citations Open access
Semantic Scholar
Population dynamics of HIV drug resistance during treatment scale-up in Uganda: a population-based longitudinal study
Michael A. Martin, S. Reynolds, Brian Foley, F. Nalugoda +14 more
2024medRxiv1 citations Open access
Semantic Scholar
Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage
A. Brizzi, J. Kagaayi, R. Ssekubugu, L. Abeler-Dörner +16 more
2024medRxiv1 citations Open access
Semantic Scholar
Estimating HIV Generation Time Distribution in Sub-Saharan Africa Using Phylogenetic Data from the Hptn071 Study
R. Hinch, T. Golubchik, W. Probert, D. Bonsall +13 more
2023Social Science Research Network1 citations Open access
Semantic Scholar
HIV Transmission in a Declining African Epidemic
G. Bell, M. K. Grabowski, J. Mpagazi, F. Di Lauro +25 more
2026medRxiv0 citations Open access
Semantic Scholar
Evaluating the biomedical and behavioral drivers of HIV incidence decline in adolescent girls and young women in Uganda: A mathematical modeling study
A. Akullian, V. Ssempijja, D. Bridenbecker, F. Nalugoda +18 more
2026PLoS Medicine0 citations Open access
Semantic Scholar
Usability and acceptability of capillary blood self-collection devices among adults living with HIV in Zambia: a randomized crossover trial
Mohammed Limbada, Comfort R. Phiri, A. Schaap, Melvin Simuyamba +13 more
2026BMC Infectious Diseases0 citations Open access
Semantic Scholar
The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study
M. Hall, W. Probert, L. Abeler-Dörner, C. Wymant +21 more
2026medRxiv0 citations Open access
Semantic Scholar
Molecular Epidemiology of HIV in an African Epidemic with Declining HIV incidence but High Prevalence: A Longitudinal, Population-based Study in Uganda
Seungwon Kim, A. Blenkinsop, Michael A. Martin, B. Mabvakure +15 more
2026medRxiv0 citations Open access
Semantic Scholar
Estimation of stratified seroprevalence directly from raw serological assay measurements with multi-level Bayesian mixture modelling
C. Wymant, M. Kendall, J.-A. Hay, C. Fraser
2026medRxiv0 citations Open access
Semantic Scholar
HIV Transmission in a Declining African Epidemic: A Matched Case-Control and Contact-Tracing Study
G. Bell, Mary Kathryn Grabowski, J. Mpagazi, F. Di Lauro +24 more
2026Epidemiology0 citations
Semantic Scholar
Clade I mpox vaccination: strategies for deployment and evaluation
Caitlin Pley, J. Panovska-Griffiths, R. Hinch, C. Wymant +12 more
2025EBioMedicine0 citations Open access
Semantic Scholar
The genetic architecture of HIV-1 virulence
François Blanquart, C. Wymant, Matthew D. Hall, R. Power +29 more
2025Virus Evolution0 citations Open access
Semantic Scholar
Learning patterns of HIV-1 co-resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning
A. B. Igiraneza, P. Zacharopoulou, R. Hinch, C. Wymant +3 more
2023bioRxiv0 citations Open access
Semantic Scholar
Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias
Helen R. Fryer, T. Golubchik, Matthew D. Hall, C. Fraser +29 more
2023PLoS Pathogens0 citations Open access
Semantic Scholar
Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission
M. Kraemer, Oliver G. Pybus, C. Fraser, S. Cauchemez +2 more
2022Nature Medicine0 citations Open access
Semantic Scholar

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