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M. de Cesare · SciRah

Researcher profile · Semantic Scholar

M. de Cesare

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M. de Cesare — researcher profile on SciRah

h-index: 22
Works: 56
Citations: 3,232

Most-cited papers

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
P. Bradley, N. C. Gordon, T. Walker, L. Dunn +24 more
2015Nature Communications523 citations Open access
Semantic Scholar
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
J. Weirather, M. de Cesare, Yun-Hao Wang, P. Piazza +4 more
2017F1000Research461 citations Open access
Semantic Scholar
SARS-CoV-2 within-host diversity and transmission
K. Lythgoe, M. Hall, L. Ferretti, M. de Cesare +32 more
2021Science377 citations Open access
Semantic Scholar
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
Camilla L. C. Ip, M. Loose, John R. Tyson, M. de Cesare +21 more
2015F1000Research302 citations Open access
Semantic Scholar
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E. Alm, E. Broberg, T. Connor, Emma B. Hodcroft +496 more
2020Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin199 citations Open access
Semantic Scholar
Sequencing of human genomes with nanopore technology
R. Bowden, R. Davies, A. Heger, A. Pagnamenta +16 more
2019Nature Communications170 citations Open access
Semantic Scholar
Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
P. Bradley, N. C. Gordon, T. Walker, L. Dunn +24 more
2016Nature Communications164 citations Open access
Semantic Scholar
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity
C. Wymant, M. Hall, O. Ratmann, D. Bonsall +5 more
2017bioRxiv162 citations Open access
Semantic Scholar
Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico
J. Thézé, Tony Li, L. du Plessis, Jerome Bouquet +25 more
2018Cell Host and Microbe90 citations Open access
Semantic Scholar
Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)
A. Mcnaughton, H. Roberts, D. Bonsall, M. de Cesare +11 more
2018Scientific Reports89 citations Open access
Semantic Scholar
A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings
D. Bonsall, T. Golubchik, M. de Cesare, Mohammed Limbada +18 more
2020Journal of Clinical Microbiology67 citations Open access
Semantic Scholar
A highly virulent variant of HIV-1 circulating in the Netherlands
C. Wymant, D. Bezemer, F. Blanquart, L. Ferretti +28 more
2022Science65 citations Open access
Semantic Scholar
Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus
Gu-Lung Lin, S. Drysdale, M. Snape, D. O'Connor +16 more
2021Nature Communications51 citations Open access
Semantic Scholar
Chloroplast DNA markers (cpSSRs, SNPs) for Miscanthus, Saccharum and related grasses (Panicoideae, Poaceae)
M. de Cesare, T. Hodkinson, S. Barth
2010Molecular breeding51 citations
Semantic Scholar
Early Analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein
T. Golubchik, K. Lythgoe, Matthew D. Hall, L. Ferretti +10 more
2021medRxiv50 citations Open access
Semantic Scholar
Flexible and cost-effective genomic surveillance of P. falciparum malaria with targeted nanopore sequencing
M. de Cesare, M. Mwenda, A. Jeffreys, Jacob Chirwa +15 more
2023bioRxiv44 citations Open access
Semantic Scholar
Shared SARS-CoV-2 diversity suggests localised transmission of minority variants
K. Lythgoe, M. Hall, L. Ferretti, M. de Cesare +31 more
2020bioRxiv42 citations Open access
Semantic Scholar
Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus
Gu-Lung Lin, S. Drysdale, M. Snape, D. O'Connor +16 more
2024Nature Communications38 citations Open access
Semantic Scholar
Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype
C. Goh, K. Burnham, M. Ansari, M. de Cesare +7 more
2020Scientific Reports33 citations Open access
Semantic Scholar
Evidence of tenofovir resistance in chronic hepatitis B virus (HBV) infection: An observational case series of South African adults
Jolynne Mokaya, Tongai Gibson Maponga, A. Mcnaughton, M. van Schalkwyk +12 more
2020Journal of Clinical Virology28 citations Open access
Semantic Scholar
Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis
P. Bradley, N. C. Gordon, T. Walker, L. Dunn +24 more
2015bioRxiv28 citations Open access
Semantic Scholar
Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting
I. Elliott, E. Batty, D. Ming, M. Robinson +4 more
2018bioRxiv25 citations Open access
Semantic Scholar
Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load.
Jessica M. Fogel, D. Bonsall, V. Cummings, R. Bowden +13 more
2020Journal of Antimicrobial Chemotherapy22 citations Open access
Semantic Scholar
Targeted metagenomic sequencing enhances the identification of pathogens associated with acute infection
C. Goh, T. Golubchik, M. A. Ansari, M. de Cesare +19 more
2019bioRxiv18 citations Open access
Semantic Scholar
Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans
I. Elliott, N. Thangnimitchok, M. de Cesare, Piyada Linsuwanon +5 more
2021Infection, Genetics and Evolution15 citations Open access
Semantic Scholar
Within-host genomics of SARS-CoV-2
K. Lythgoe, M. Hall, L. Ferretti, M. de Cesare +31 more
202015 citations Open access
Semantic Scholar
Simultaneous Viral Whole-Genome Sequencing and Differential Expression Profiling in Respiratory Syncytial Virus Infection of Infants.
Gu-Lung Lin, T. Golubchik, S. Drysdale, D. O'Connor +11 more
2020Journal of Infectious Diseases15 citations Open access
Semantic Scholar
Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient
C. Petridou, D. Bonsall, Aleem Ahmed, M. Roberts +7 more
2019Emerging Infectious Diseases14 citations Open access
Semantic Scholar
A comprehensive genomics solution for HIV surveillance and clinical monitoring in a global health setting
D. Bonsall, T. Golubchik, M. de Cesare, Mohammed Limbada +17 more
2018bioRxiv10 citations Open access
Semantic Scholar
Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study
Matthew D. Hall, T. Golubchik, D. Bonsall, L. Abeler-Dörner +82 more
2023The Lancet Microbe8 citations Open access
Semantic Scholar
Endemic HBV among hospital in-patients in Bangladesh, including evidence of occult infection
F. Chowdhury, A. Mcnaughton, M. R. Amin, L. Barai +15 more
2021Journal of General Virology7 citations Open access
Semantic Scholar
Nuclear SSR markers for Miscanthus, Saccharum, and related grasses (Saccharinae, Poaceae)
T. Hodkinson, M. de Cesare, S. Barth
2013Applications in Plant Sciences7 citations Open access
Semantic Scholar
Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data
R. Mayne, S. Secret, Cyndi G. Geoghegan, A. Trebes +16 more
2024bioRxiv6 citations Open access
Semantic Scholar
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA
Le-Le Zhao, M. Hall, M. de Cesare, G. Macintyre-Cockett +5 more
2022Proceedings of the Royal Society B6 citations Open access
Semantic Scholar
Case Report: Application of hepatitis B virus (HBV) deep sequencing to distinguish between acute and chronic infection
L. O. Downs, A. Mcnaughton, M. de Cesare, M. Ansari +6 more
2020Wellcome Open Research5 citations Open access
Semantic Scholar
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 2; peer review: 2 approved]
J. Weirather, M. de Cesare, Yun-Hao Wang, P. Piazza +7 more
5 citations
Semantic Scholar
Demographic characteristics of sources of HIV-1 transmission in Zambia
M. Hall, T. Golubchik, D. Bonsall, L. Abeler-Dörner +18 more
20214 citations Open access
Semantic Scholar
HIV genotyping and phylogenetics in the HPTN 071 (PopART) study: validation of a high-throughput sequencing assay for viral load quantification, genotyping, resistance testing and high-resolution transmission networking
D. Bonsall, T. Golubchik, B. Kosloff, Mohammed Limbada +13 more
20194 citations
Semantic Scholar
MinION Analysis and Reference Consortium: Phase 1 data release and analysis [version 1; peer review: 2 approved]
Camilla L. C. Ip, M. Loose, John R. Tyson, M. de Cesare +19 more
20223 citations
Semantic Scholar
Association between disease severity and co-detection of respiratory pathogens in infants with RSV infection
Gu-Lung Lin, S. Drysdale, M. Snape, D. O'Connor +17 more
2023medRxiv2 citations Open access
Semantic Scholar
Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes
K. T. Christensen, Florian Pierard, D. Bonsall, R. Bowden +15 more
2023Viruses2 citations Open access
Semantic Scholar
Rolling circle amplification and nanopore-based deep sequencing of full-length HBV genomes
A. Mcnaughton, D. Bonsall, M. de Cesare, A. Brown +4 more
20182 citations
Semantic Scholar
Estimating HIV Generation Time Distribution in Sub-Saharan Africa Using Phylogenetic Data from the Hptn071 Study
R. Hinch, T. Golubchik, W. Probert, D. Bonsall +13 more
2023Social Science Research Network1 citations Open access
Semantic Scholar
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 1; peer review: 2 approved with reservations]
J. Weirather, M. de Cesare, Yun-Hao Wang, P. Piazza +4 more
20221 citations
Semantic Scholar
Publisher Correction: Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus
Gu-Lung Lin, S. Drysdale, M. Snape, D. O'Connor +42 more
2021Nature Communications1 citations Open access
Semantic Scholar
Targeted sequence capture of Orientia tsutsugamushi DNA from chiggers and humans
I. Elliott, N. Thangnimitchok, M. de Cesare, Piyada Linsuwanon +5 more
2021bioRxiv1 citations Open access
Semantic Scholar
Characterisation of Miscanthus genetic resources: a combined analysis of plastid and nuclear microsatellites, nrDNA sequences, flow cytometry and morphology.
M. de Cesare
20121 citations
Semantic Scholar
The genetic architecture of HIV-1 virulence
François Blanquart, C. Wymant, Matthew D. Hall, R. Power +29 more
2025Virus Evolution0 citations Open access
Semantic Scholar
A putative hepatitis B virus sequence motif associated with hepatocellular carcinoma in South African adults
T. Maponga, A. Mcnaughton, C. Campbell, M. de Cesare +14 more
2024medRxiv0 citations Open access
Semantic Scholar
SARS-CoV-2 genomics beyond the consensus sequence: evidence for circulating mixed viral populations
K. Lythgoe, M. Hall, L. Ferretti, M. de Cesare +23 more
20200 citations Open access
Semantic Scholar

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