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John C. Braisted · SciRah

Researcher profile · Semantic Scholar

John C. Braisted

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John C. Braisted — researcher profile on SciRah

h-index: 23
Works: 43
Citations: 9,353

Most-cited papers

TM4: a free, open-source system for microarray data management and analysis.
A. Saeed, V. Sharov, J. White, J. Li +17 more
2003BioTechniques4,928 citations Open access
Semantic Scholar
9) TM4 Microarray Software Suite
A. Saeed, N. Bhagabati, John C. Braisted, W. Liang +6 more
20061,768 citations
Semantic Scholar
TM4 microarray software suite.
A. Saeed, N. Bhagabati, John C. Braisted, W. Liang +6 more
2006Methods in Enzymology1,259 citations
Semantic Scholar
Fluorescence polarization assays in high-throughput screening and drug discovery: a review
M. Hall, Adam Yasgar, Tyler Peryea, John C. Braisted +3 more
2016Methods and Applications in Fluorescence201 citations Open access
Semantic Scholar
Proteomic Analysis of Laser-Captured Paraffin-Embedded Tissues: A Molecular Portrait of Head and Neck Cancer Progression
V. Patel, B. Hood, A. Molinolo, N. Lee +5 more
2008Clinical Cancer Research176 citations Open access
Semantic Scholar
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
John C. Braisted, Srilatha Kuntumalla, C. Vogel, E. Marcotte +8 more
2008BMC Bioinformatics170 citations Open access
Semantic Scholar
DUOXA1-mediated ROS production promotes cisplatin resistance by activating ATR-Chk1 pathway in ovarian cancer
Yun-Xiao Meng, Chi-Wei Chen, Mingo M. H. Yung, Wei Sun +17 more
2018Cancer Letters76 citations Open access
Semantic Scholar
Identification of Pax5 as a target of MTA1 in B-cell lymphomas.
S. Balasenthil, Anupama E. Gururaj, A. Talukder, R. Bagheri-Yarmand +6 more
2007Cancer Research70 citations Open access
Semantic Scholar
Small-Molecule Screens: A Gateway to Cancer Therapeutic Agents with Case Studies of Food and Drug Administration–Approved Drugs
N. Coussens, John C. Braisted, Tyler Peryea, G. Sittampalam +2 more
2017Pharmacological Reviews67 citations Open access
Semantic Scholar
A chemical–biological similarity-based grouping of complex substances as a prototype approach for evaluating chemical alternatives
Fabian A. Grimm, Yasuhiro Iwata, O. Sirenko, G. Chappell +12 more
2016Green chemistry : an international journal and green chemistry resource : GC65 citations Open access
Semantic Scholar
Inhibition of natriuretic peptide receptor 1 reduces itch in mice
H. J. Solinski, P. Dranchak, E. Oliphant, Xing-Long Gu +4 more
2019Science Translational Medicine53 citations Open access
Semantic Scholar
Robotic high-throughput biomanufacturing and functional differentiation of human pluripotent stem cells
C. Tristan, P. Ormanoglu, J. Slamecka, C. Malley +14 more
2021Stem Cell Reports48 citations Open access
Semantic Scholar
Transcriptional profiling of canine osteosarcoma identifies prognostic gene expression signatures with translational value for humans
Joshua D. Mannheimer, G. Tawa, D. Gerhold, John C. Braisted +6 more
2023Communications Biology42 citations Open access
Semantic Scholar
In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism
Srilatha Kuntumalla, Quanshun Zhang, John C. Braisted, R. Fleischmann +4 more
2011BMC Microbiology40 citations Open access
Semantic Scholar
SENP1-mediated deSUMOylation of JAK2 regulates its kinase activity and platinum drug resistance
Jing Li, Rui-Qin Wu, Mingo M. H. Yung, Jing Sun +15 more
2021Cell Death and Disease37 citations Open access
Semantic Scholar
Autocrine activation of JAK2 by IL-11 promotes platinum drug resistance
Wei Zhou, Wei Sun, Mingo M. H. Yung, S. Dai +28 more
2018Oncogene36 citations Open access
Semantic Scholar
Investigating the Genome Diversity of B. cereus and Evolutionary Aspects of B. anthracis Emergence
L. Papazisi, D. Rasko, Shashikala Ratnayake, Geoff R Bock +15 more
2011Genomics33 citations Open access
Semantic Scholar
Robotic High-Throughput Biomanufacturing and Functional Differentiation of Human Pluripotent Stem Cells
C. Tristan, P. Ormanoglu, J. Slamecka, C. Malley +13 more
2020bioRxiv31 citations Open access
Semantic Scholar
Role of luxS in Bacillus anthracis growth and virulence factor expression
Marcus B. Jones, S. Peterson, Rosslyn Benn, John C. Braisted +5 more
2010Virulence29 citations Open access
Semantic Scholar
Quantitative high-throughput screening assays for the discovery and development of SIRPα-CD47 interaction inhibitors
Thomas W. Miller, Joshua D. Amason, E. Garcin, Laurence Lamy +8 more
2019PLoS ONE28 citations Open access
Semantic Scholar
Cytotoxic Profiling of Annotated and Diverse Chemical Libraries Using Quantitative High Throughput Screening
Olivia W. Lee, S. Austin, Madison Gamma, Dorian M. Cheff +9 more
2018bioRxiv25 citations Open access
Semantic Scholar
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types
Eleanor Howe, A. de Souza, D. Lahr, Simon Chatwin +26 more
2014Nucleic Acids Res.24 citations Open access
Semantic Scholar
Characterizing the Escherichia coli O157:H7 Proteome Including Protein Associations with Higher Order Assemblies
R. Pieper, Quanshun Zhang, David J. Clark, Shih-Ting Huang +6 more
2011PLoS ONE23 citations Open access
Semantic Scholar
Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species
G. Tawa, John C. Braisted, D. Gerhold, Gurmit S. Grewal +4 more
2021PLoS Comput. Biol.22 citations Open access
Semantic Scholar
Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets
R. Pieper, Quanshun Zhang, David J. Clark, P. Parmar +6 more
2013PLoS ONE20 citations Open access
Semantic Scholar
The MT1G Gene in LUHMES Neurons Is a Sensitive Biomarker of Neurotoxicity
Z. Tong, John C. Braisted, Pei-Hsuan Chu, D. Gerhold
2020Neurotoxicity research19 citations Open access
Semantic Scholar
A Stem Cell-Derived Endothelial Cell Model that Responds to Tobacco Smoke Like Primary Endothelial Cells
Pei-Hsuan Chu, Gui-Bin Chen, David Kuo, John C. Braisted +5 more
2020Chemical Research in Toxicology15 citations Open access
Semantic Scholar
The Toxmatrix: Chemo-genomic profiling identifies interactions that reveal mechanisms of toxicity
Z. Tong, Ruili Huang, Yuhong Wang, Carleen Klumpp-Thomas +6 more
2017Chemical Research in Toxicology10 citations Open access
Semantic Scholar
Terfenadine resensitizes doxorubicin activity in drug-resistant ovarian cancer cells via an inhibition of CaMKII/CREB1 mediated ABCB1 expression
Wei Huang, Shu Yang, Yu-Shan Cheng, N. Sima +5 more
2022Frontiers in Oncology9 citations Open access
Semantic Scholar
Human Pluripotent Stem Cells for High-Throughput Drug Screening and Characterization of Small Molecules
Seungmi Ryu, Pei-Hsuan Chu, C. Malley, John C. Braisted +10 more
2021Methods in molecular biology7 citations Open access
Semantic Scholar
nEASE: a method for gene ontology subclassification of high-throughput gene expression data
T. Chittenden, Eleanor Howe, Jennifer M. Taylor, J. Mar +7 more
2012Bioinform.7 citations Open access
Semantic Scholar
Genome-Edited Coincidence and PMP22-HiBiT Fusion Reporter Cell Lines Enable an Artifact-Suppressive Quantitative High-Throughput Screening Strategy for PMP22 Gene-Dosage Disorder Drug Discovery.
Natalia J Martinez, John C. Braisted, P. Dranchak, John J. Moran +8 more
2021ACS Pharmacology & Translational Science6 citations Open access
Semantic Scholar
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from genes, proteins, and metabolites
John C. Braisted, Andrew C. Patt, Cole Tindall, T. Eicher +4 more
2022bioRxiv5 citations Open access
Semantic Scholar
A general assay platform to study protein pharmacology using ligand-dependent structural dynamics
Daniel A Ciulla, P. Dranchak, Mahesh Aitha, R. H. P. van Neer +6 more
2025Nature Communications3 citations Open access
Semantic Scholar
qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data
B. Queme, John C. Braisted, P. Dranchak, James Inglese
2022bioRxiv3 citations Open access
Semantic Scholar
Enhancing the Fitness of Embryoid Bodies and Organoids by Chemical Cytoprotection
Seungmin Ryu, C. Weber, Pei-Hsuan Chu, C. Tristan +10 more
2022bioRxiv2 citations Open access
Semantic Scholar
Identification of Pax 5 as a Target of MTA 1 in B-Cell Lymphomas
S. Balasenthil, Anupama E. Gururaj, A. Talukder, R. Bagheri-Yarmand +6 more
20072 citations
Semantic Scholar
Abstract 278: No cell left behind: Residual ovarian spheroids drive recurrence and are sensitive to the pro-oxidant elesclomol
Ian Goldlust, Kelli M. Wilson, L. Szabova, Xiaohu Zhang +21 more
20161 citations
Semantic Scholar
Erratum to: Role of luxS in Bacillus anthracis growth and virulence factor expression
Marcus B. Jones, S. Peterson, Rosslyn Benn, John C. Braisted +5 more
20111 citations Open access
Semantic Scholar
Correction to: Autocrine activation of JAK2 by IL-11 promotes platinum drug resistance
Wei Zhou, Wei Sun, Mingo M. H. Yung, S. Dai +28 more
2026Oncogene0 citations
Semantic Scholar
Correction to: Human Pluripotent Stem Cells for High-Throughput Drug Screening and Characterization of Small Molecules
Seungmi Ryu, Pei-Hsuan Chu, C. Malley, John C. Braisted +10 more
2022Methods in molecular biology0 citations Open access
Semantic Scholar
Comparative Proteomic Analysis of Enterohemorrhagic E. coli (EHEC) Grown In Vitro Versus In Vivo using a 2-DE Gel Approach.
Quanshun Zhang, David J. Clark, P. Parmar, H. Alami +8 more
20100 citations
Semantic Scholar
Lymphomas Identification of Pax 5 as a Target of MTA 1 in B-Cell
S. Balasenthil, Anupama E. Gururaj, A. Talukder, R. Bagheri-Yarmand +6 more
20070 citations
Semantic Scholar

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