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M. MacCoss · SciRah

Researcher profile · Semantic Scholar

M. MacCoss

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M. MacCoss — researcher profile on SciRah

h-index: 89
Works: 372
Citations: 39K

Most-cited papers

The ProteomeXchange consortium at 10 years: 2023 update
E. Deutsch, N. Bandeira, Yasset Pérez-Riverol, Vagisha Sharma +18 more
2022Nucleic Acids Res.732 citations Open access
Semantic Scholar
The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics
E. Deutsch, N. Bandeira, Vagisha Sharma, Yasset Pérez-Riverol +17 more
2019Nucleic Acids Res.664 citations Open access
Semantic Scholar
Proteogenomic Data and Resources for Pan-Cancer Analysis
Yi-Ze Li, Yong-Chao Dou, Felipe da Veiga Leprevost, Yifat Geffen +75 more
2023Cancer Cell229 citations Open access
Semantic Scholar
Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries
Lindsay K. Pino, Seth Just, M. MacCoss, B. Searle
2020Molecular & Cellular Proteomics208 citations Open access
Semantic Scholar
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition
Lilian R. Heil, Eugen Damoc, T. Arrey, A. Pashkova +18 more
2023bioRxiv198 citations Open access
Semantic Scholar
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
L. Gatto, R. Aebersold, Jüergen Cox, Vadim Demichev +17 more
2022Nature Methods163 citations Open access
Semantic Scholar
Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows
D. Amodei, J. Egertson, B. MacLean, Richard S. Johnson +6 more
2019Journal of the American Society for Mass Spectrometry139 citations Open access
Semantic Scholar
Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice
Y. Chiao, Hui-Liang Zhang, Mariya T. Sweetwyne, Jeremy A. Whitson +18 more
2020bioRxiv105 citations Open access
Semantic Scholar
Rapamycin persistently improves cardiac function in aged, male and female mice, even following cessation of treatment
Ellen Quarles, N. Basisty, Y. Chiao, G. Merrihew +11 more
2019Aging Cell90 citations Open access
Semantic Scholar
Putting Humpty Dumpty back together again: What does protein quantification mean in bottom-up proteomics?
D. Plubell, L. Käll, B. Webb-Robertson, L. Bramer +6 more
2022Journal of Proteome Research77 citations Open access
Semantic Scholar
Sampling the proteome by emerging single-molecule and mass spectrometry methods
M. MacCoss, J. Alfaro, Danielle A. Faivre, Christine C. Wu +2 more
2022Nature Methods76 citations Open access
Semantic Scholar
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics
Lindsay K. Pino, Han-Yin Yang, William Stafford Noble, B. Searle +2 more
2019bioRxiv65 citations Open access
Semantic Scholar
Profiling Mouse Brown and White Adipocytes to Identify Metabolically Relevant Small ORFs and Functional Microproteins
Thomas F. Martinez, Sally Lyons-Abbott, A. Bookout, E. V. de Souza +27 more
2022bioRxiv64 citations Open access
Semantic Scholar
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
K. Kirkwood, Brian S. Pratt, N. Shulman, Kaipo Tamura +3 more
2022Nature Protocols49 citations Open access
Semantic Scholar
Thesaurus: quantifying phosphopeptide positional isomers
B. Searle, R. T. Lawrence, M. MacCoss, J. Villén
2019Nature Methods46 citations Open access
Semantic Scholar
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome
Christine C. Wu, Kristine A. Tsantilas, Jea-Hoo Park, D. Plubell +15 more
2024bioRxiv44 citations Open access
Semantic Scholar
Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity
K. Kirkwood, M. W. Christopher, J. Burgess, S. Littau +8 more
2021bioRxiv43 citations Open access
Semantic Scholar
The mitochondrially targeted peptide elamipretide (SS-31) improves ADP sensitivity in aged mitochondria by increasing uptake through the adenine nucleotide translocator (ANT)
Gavin A. Pharaoh, Varun Kamat, Sricharan Kannan, Rudolph S. Stuppard +9 more
2023GeroScience36 citations Open access
Semantic Scholar
Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer’s disease
Zhi-Jian Huang, G. Merrihew, Eric B. Larson, Jea-Hoo Park +8 more
2023Nature Communications34 citations Open access
Semantic Scholar
Skeletal muscle TFEB signaling promotes central nervous system function and reduces neuroinflammation during aging and neurodegenerative disease
Ian Matthews, Allison Birnbaum, A. Gromova, Amy Huang +17 more
2023bioRxiv34 citations Open access
Semantic Scholar
Abstract LB-242: Proteomic Data Commons: A resource for proteogenomic analysis
Ratna R. Thangudu, P. Rudnick, M. Holck, D. Singhal +6 more
2020Bioinformatics, Convergence Science, and Systems Biology34 citations
Semantic Scholar
The metabolome as a biomarker of aging in Drosophila melanogaster
Xia-Qing Zhao, Forrest T Golic, Benjamin R. Harrison, M. Manoj +6 more
2022Aging Cell33 citations Open access
Semantic Scholar
Comparison of unit resolution versus high-resolution accurate mass for parallel reaction monitoring
Lilian R. Heil, P. Remes, M. MacCoss
2021bioRxiv33 citations Open access
Semantic Scholar
New Views of Old Proteins: Clarifying the Enigmatic Proteome
K. Burnum-Johnson, T. Conrads, R. Drake, A. Herr +16 more
2021Molecular & Cellular Proteomics32 citations Open access
Semantic Scholar
Kinetochore-associated Stu2 promotes chromosome biorientation in vivo
Matthew P. Miller, Rena K Evans, A. Zelter, Elisabeth A. Geyer +5 more
2019PLoS Genetics32 citations Open access
Semantic Scholar
CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation
A. Brilot, A. S. Lyon, A. Zelter, Shruthi Viswanath +6 more
2020bioRxiv31 citations Open access
Semantic Scholar
Assessing Protein Sequence Database Suitability Using De Novo Sequencing*
Richard S. Johnson, B. Searle, B. Nunn, Jason M. Gilmore +4 more
2019Molecular & Cellular Proteomics31 citations Open access
Semantic Scholar
Elamipretide (SS-31) treatment attenuates age-associated post-translational modifications of heart proteins
Jeremy A. Whitson, M. Martín-Pérez, Tong Zhang, Matthew J. Gaffrey +10 more
2021GeroScience29 citations Open access
Semantic Scholar
Does DIA data contain hidden gems? A case study related to Alzheimer’s disease
Evan E. Hubbard, Lilian R. Heil, G. Merrihew, J. Chhatwal +12 more
2021Journal of Proteome Research29 citations Open access
Semantic Scholar
Acarbose has sex-dependent and -independent effects on age-related physical function, cardiac health, and lipid biology
Jonathan J. Herrera, Sean Louzon, Kaitlyn Pifer, Danielle C. Leander +10 more
2020JCI Insight29 citations Open access
Semantic Scholar
Avant-garde: An automated data-driven DIA data curation tool.
A. S. V. Jacome, R. Peckner, N. Shulman, Karsten Krug +7 more
2019Nature Methods29 citations Open access
Semantic Scholar
Mitochondrial Inorganic Polyphosphate (polyP) Is a Potent Regulator of Mammalian Bioenergetics in SH-SY5Y Cells: A Proteomics and Metabolomics Study
M. Guitart-Mampel, Pedro Urquiza, F. Carnevale, J. Anderson +8 more
2022Frontiers in Cell and Developmental Biology28 citations Open access
Semantic Scholar
De Novo Design of Tyrosine and Serine Kinase Driven Protein Switches
Nicholas B. Woodall, Zara Y. Weinberg, Jesslyn E. Park, F. Busch +9 more
2021Nature Structural & Molecular Biology27 citations Open access
Semantic Scholar
Mass spectrometric identification of immunogenic SARS-CoV-2 epitopes and cognate TCRs
K. Pan, Yulun Chiu, Eric C. Huang, Michelle Chen +6 more
2021Proceedings of the National Academy of Sciences of the United States of America26 citations Open access
Semantic Scholar
Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging
J. Russell, Taek-Kyun Kim, Ayush Noori, G. Merrihew +5 more
2020GeroScience26 citations Open access
Semantic Scholar
Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment
P. Remes, Ping F. Yip, M. MacCoss
2020Analytical Chemistry26 citations Open access
Semantic Scholar
A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer’s disease
G. Merrihew, Jea-Hoo Park, D. Plubell, B. Searle +12 more
2023bioRxiv24 citations Open access
Semantic Scholar
Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins.
A. Federation, V. Nandakumar, B. Searle, Andrew B. Stergachis +8 more
2020Cell Reports23 citations Open access
Semantic Scholar
A male steroid controls female sexual behaviour in the malaria mosquito
Duo Peng, E. Kakani, Enzo Mameli, C. Vidoudez +7 more
2022Nature22 citations Open access
Semantic Scholar
Multiplexed quantification of insulin and C-peptide by LC-MS/MS without the use of antibodies
North Foulon, E. Goonatilleke, M. MacCoss, Michelle A. Emrick +1 more
2022Journal of Mass Spectrometry and Advances in the Clinical Lab22 citations Open access
Semantic Scholar
Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry
Michael Riffle, M. Hoopmann, Daniel Jaschob, Guo Zhong +5 more
2021bioRxiv22 citations Open access
Semantic Scholar
Mutual Balance of Histone Deacetylases 1 and 2 and the Acetyl Reader ATAD2 Regulates the Level of Acetylation of Histone H4 on Nascent Chromatin of Human Cells
Pavlo Lazarchuk, John Hernandez-Villanueva, M. Pavlova, A. Federation +2 more
2020Molecular and Cellular Biology21 citations Open access
Semantic Scholar
De novo design of high-affinity protein binders to bioactive helical peptides
Susana Vázquez Torres, P. J. Leung, Isaac D. Lutz, Preetham Venkatesh +19 more
2022bioRxiv20 citations Open access
Semantic Scholar
The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data
Attila Kertész-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, J. Eng +8 more
2022bioRxiv19 citations Open access
Semantic Scholar
Ripple: A Practical Declarative Programming Framework for Serverless Compute
Shannon Joyner, M. MacCoss, Christina Delimitrou, Hakim Weatherspoon
2020arXiv.org19 citations
Semantic Scholar
Building spectral libraries from narrow window data independent acquisition mass spectrometry data
Lilian R. Heil, William E. Fondrie, Christopher D. McGann, A. Federation +3 more
2022Journal of Proteome Research17 citations Open access
Semantic Scholar
Affinity Purification-Mass Spectrometry Identifies a Novel Interaction between a Polerovirus and a Conserved Innate Immunity Aphid Protein that Regulates Transmission Efficiency.
S. DeBlasio, Jennifer R. Wilson, C. Tamborindeguy, Richard S. Johnson +4 more
2021Journal of Proteome Research15 citations Open access
Semantic Scholar
Slowed protein turnover in aging Drosophila reflects a shift in cellular priorities.
E. S. Vincow, Ruth E. Thomas, G. Merrihew, M. MacCoss +1 more
2021The journals of gerontology. Series A, Biological sciences and medical sciences15 citations Open access
Semantic Scholar
Peptidomics approaches for the identification of bioactive molecules from Diaphorina citri.
L. Fleites, Richard J. Johnson, Angela Kruse, R. Nachman +3 more
2020Journal of Proteome Research15 citations
Semantic Scholar
Improved analysis of crosslinking mass spectrometry data with Kojak 2.0, advanced by integration into the Trans-Proteomic Pipeline
M. Hoopmann, David D. Shteynberg, A. Zelter, Michael Riffle +7 more
2023Journal of Proteome Research14 citations Open access
Semantic Scholar

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