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Y. Satou · SciRah

Researcher profile · Semantic Scholar

Y. Satou

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Y. Satou — researcher profile on SciRah

h-index: 60
Works: 177
Citations: 13K

Most-cited papers

The amphioxus genome and the evolution of the chordate karyotype
N. Putnam, Thomas W. Butts, D. E. Ferrier, R. F. Furlong +33 more
2008Nature1,616 citations Open access
Semantic Scholar
The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
L. Holland, R. Albalat, K. Azumi, Èlia Benito-Gutiérrez +60 more
2008Genome Research499 citations Open access
Semantic Scholar
Regulatory Blueprint for a Chordate Embryo
K. Imai, M. Levine, N. Satoh, Y. Satou
2006Science373 citations
Semantic Scholar
Axial patterning in cephalochordates and the evolution of the organizer
Jr-Kai Yu, Y. Satou, N. Holland, T. Shin-I +4 more
2007Nature232 citations
Semantic Scholar
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
Y. Satou, K. Mineta, M. Ogasawara, Yasunori Sasakura +16 more
2008Genome Biology209 citations Open access
Semantic Scholar
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.
J. Vinson, D. Jaffe, K. O'Neill, E. Karlsson +9 more
2005Genome Research204 citations Open access
Semantic Scholar
An Integrated Database of the Ascidian, Ciona intestinalis: Towards Functional Genomics
Y. Satou, T. Kawashima, E. Shoguchi, Akie Nakayama +1 more
2005Zoological Science202 citations Open access
Semantic Scholar
Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system
K. Imai, Alberto Stolfi, M. Levine, Y. Satou
2009Development164 citations Open access
Semantic Scholar
The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.
Olivier Tassy, Delphine Dauga, Fabrice Daian, Daniel Sobral +25 more
2010Genome Research121 citations Open access
Semantic Scholar
A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona
Y. Satou, Ryohei Nakamura, De-Li Yu, R. Yoshida +5 more
2019Genome Biology and Evolution104 citations Open access
Semantic Scholar
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets
Matija Brozovic, C. Dantec, Justine Dardaillon, Delphine Dauga +35 more
2017Nucleic Acids Res.104 citations Open access
Semantic Scholar
High-throughput protein expression screening and purification in Escherichia coli.
R. Vincentelli, Agnès Cimino, A. Geerlof, A. Kubo +2 more
2011Methods100 citations Open access
Semantic Scholar
Blastema induction in aneurogenic state and Prrx-1 regulation by MMPs and FGFs in Ambystoma mexicanum limb regeneration.
Akira Satoh, Aki Makanae, Ayako Hirata, Y. Satou
2011Developmental Biology89 citations Open access
Semantic Scholar
Gene expression profile during the life cycle of the urochordate Ciona intestinalis.
K. Azumi, S. Sabău, Manabu Fujie, T. Usami +9 more
2007Developmental Biology73 citations Open access
Semantic Scholar
Guidelines for the Nomenclature of Genetic Elements in Tunicate Genomes
Alberto Stolfi, Yasunori Sasakura, D. Chalopin, Y. Satou +10 more
2014Genesis71 citations Open access
Semantic Scholar
Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis
Y. Satou, Makoto Hamaguchi, K. Takeuchi, K. Hastings +1 more
2006Nucleic Acids Research68 citations Open access
Semantic Scholar
Genomic cis-regulatory networks in the early Ciona intestinalis embryo
A. Kubo, N. Suzuki, Xuyang Yuan, K. Nakai +3 more
2010Development67 citations
Semantic Scholar
Ci-Tbx6b and Ci-Tbx6c are key mediators of the maternal effect gene Ci-macho1 in muscle cell differentiation in Ciona intestinalis embryos.
K. Yagi, Naohito Takatori, Y. Satou, N. Satoh
2005Developmental Biology65 citations Open access
Semantic Scholar
A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae
Jr-Kai Yu, Ming-Chih Wang, T. Shin-I, Y. Kohara +3 more
2008Development, Genes and Evolution60 citations Open access
Semantic Scholar
Conserved function of caspase-8 in apoptosis during bony fish evolution.
S. Sakata, Yi-Lin Yan, Y. Satou, Akihiro Momoi +6 more
2007Gene57 citations Open access
Semantic Scholar
Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis.
Kyoko Miwata, Takuto Chiba, Reiko Horii, Lixy Yamada +4 more
2006Developmental Biology56 citations Open access
Semantic Scholar
Genetic pathways for differentiation of the peripheral nervous system in ascidians
K. Waki, K. Imai, Y. Satou
2015Nature Communications51 citations Open access
Semantic Scholar
Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis.
E. Shoguchi, T. Kawashima, Y. Satou, Makoto Hamaguchi +5 more
2005Genome Research50 citations Open access
Semantic Scholar
High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: alternative expression modes and gene function correlates.
J. Matsumoto, K. Dewar, Jessica Wasserscheid, G. Wiley +5 more
2010Genome Research47 citations Open access
Semantic Scholar
A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo
I. Oda-Ishii, A. Kubo, Willi Kari, N. Suzuki +2 more
2016PLoS Genetics46 citations Open access
Semantic Scholar
Multiple Signaling Pathways Coordinate to Induce a Threshold Response in a Chordate Embryo
Naoyuki Ohta, Y. Satou
2013PLoS Genetics42 citations Open access
Semantic Scholar
The evolutionary conservation of the core components necessary for the extrinsic apoptotic signaling pathway, in Medaka fish
K. Sakamaki, M. Nozaki, K. Kominami, Y. Satou
2007BMC Genomics41 citations Open access
Semantic Scholar
A bHLH transcription factor gene, Twist-like 1, is essential for the formation of mesodermal tissues of Ciona juveniles.
M. Tokuoka, N. Satoh, Y. Satou
2005Developmental Biology39 citations Open access
Semantic Scholar
A Manually Curated Gene Model Set for an Ascidian, Ciona robusta (Ciona intestinalis Type A)
Y. Satou, M. Tokuoka, I. Oda-Ishii, S. Tokuhiro +3 more
2022Zoological Science38 citations Open access
Semantic Scholar
A time delay gene circuit is required for palp formation in the ascidian embryo
Tatsuro Ikeda, Terumi Matsuoka, Y. Satou
2013Development38 citations
Semantic Scholar
Foxg specifies sensory neurons in the anterior neural plate border of the ascidian embryo
Bo-Qi Liu, Y. Satou
2019Nature Communications36 citations Open access
Semantic Scholar
A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis.
D. Keys, Byung In Lee, Anna Di Gregorio, N. Harafuji +16 more
2005Proceedings of the National Academy of Sciences of the United States of America36 citations Open access
Semantic Scholar
Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain.
M. Hamada, Naoki Shimozono, Naoyuki Ohta, Y. Satou +5 more
2011Developmental Biology35 citations Open access
Semantic Scholar
The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution.
K. Sakamaki, K. Shimizu, Hiroaki Iwata, K. Imai +16 more
2014Molecular biology and evolution34 citations Open access
Semantic Scholar
CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality
T. Endo, Keisuke Ueno, Kouki Yonezawa, K. Mineta +16 more
2010Nucleic Acids Res.34 citations Open access
Semantic Scholar
Gene regulatory networks for the development and evolution of the chordate heart.
Y. Satou, N. Satoh
2006Genes & Development34 citations Open access
Semantic Scholar
Gene regulatory systems that control gene expression in the Ciona embryo
Y. Satou, K. Imai
2015Proceedings of the Japan Academy. Series B, Physical and biological sciences33 citations Open access
Semantic Scholar
Cis-Acting Transcriptional Repression Establishes a Sharp Boundary in Chordate Embryos
K. Imai, Yutaka Daido, T. Kusakabe, Y. Satou
2012Science33 citations
Semantic Scholar
Controlling Cell Fate Specification System by Key Genes Determined from Network Structure
Kenji Kobayashi, Kazuki Maeda, M. Tokuoka, A. Mochizuki +1 more
2018iScience26 citations Open access
Semantic Scholar
Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis.
Terumi Matsuoka, Tatsuro Ikeda, Kotaro Fujimaki, Y. Satou
2013Developmental Biology26 citations Open access
Semantic Scholar
Regulatory genes in the ancestral chordate genomes
Y. Satou, Shu-ichi Wada, Yasunori Sasakura, N. Satoh
2008Development, Genes and Evolution26 citations Open access
Semantic Scholar
Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: receptor and enzyme genes associated with endocrine system in the neural complex.
Toshio Sekiguchi, T. Kawashima, Y. Satou, N. Satoh
2007General and Comparative Endocrinology25 citations
Semantic Scholar
Cataloging transcription factor and major signaling molecule genes for functional genomic studies in Ciona intestinalis
Y. Satou, N. Satoh
2005Development, Genes and Evolution25 citations Open access
Semantic Scholar
A single-cell analysis of the molecular lineage of chordate embryogenesis
Teng-Jiao Zhang, Yi-Chi Xu, K. Imai, T. Fei +6 more
2020Science Advances23 citations Open access
Semantic Scholar
Tfap2 and Sox1/2/3 cooperatively specify ectodermal fates in ascidian embryos
K. Imai, H. Hikawa, Kenji Kobayashi, Y. Satou
2017Development23 citations Open access
Semantic Scholar
Differential temporal control of Foxa.a and Zic-r.b specifies brain versus notochord fate in the ascidian embryo
Tatsuro Ikeda, Y. Satou
2017Development23 citations Open access
Semantic Scholar
A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis
Michael J. Gilchrist, Daniel Sobral, P. Khoueiry, Fabrice Daian +8 more
2015Developmental Biology22 citations Open access
Semantic Scholar
M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras.
E. Keduka, Kai-Ho Ai, M. Hamada, Haruko Watanabe-Takano +5 more
2009Gene21 citations
Semantic Scholar
Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos
K. Imai, C. Hudson, I. Oda-Ishii, H. Yasuo +1 more
2016Development20 citations Open access
Semantic Scholar
Analysis of large scale expression sequenced tags (ESTs) from the anural ascidian, Molgula tectiformis.
Fuki Gyoja, Y. Satou, T. Shin-I, Y. Kohara +2 more
2007Developmental Biology19 citations Open access
Semantic Scholar

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