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A. Muruganujan · SciRah

Researcher profile · Semantic Scholar

A. Muruganujan

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A. Muruganujan — researcher profile on SciRah

h-index: 22
Works: 39
Citations: 30K

Most-cited papers

The Sequence of the Human Genome
J. Venter, M. Adams, E. Myers, Peter W. Li +269 more
2001Science6,769 citations
Semantic Scholar
The Gene Ontology resource: enriching a GOld mine
S. Carbon, Eric Douglass, Benjamin M. Good, D. Unni +176 more
2020Nucleic Acids Res.3,172 citations Open access
Semantic Scholar
PANTHER: a library of protein families and subfamilies indexed by function.
P. Thomas, M. J. Campbell, A. Kejariwal, H. Mi +5 more
2003Genome Research2,975 citations Open access
Semantic Scholar
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
H. Mi, A. Muruganujan, Dustin Ebert, Xiaosong Huang +1 more
2018Nucleic Acids Res.2,704 citations Open access
Semantic Scholar
Large-scale gene function analysis with PANTHER Classification System
H. Mi, A. Muruganujan, J. Casagrande, P. Thomas
2013Nature Protocols2,418 citations Open access
Semantic Scholar
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
H. Mi, Xiaosong Huang, A. Muruganujan, Hai-Ming Tang +3 more
2016Nucleic Acids Res.2,004 citations Open access
Semantic Scholar
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
H. Mi, A. Muruganujan, P. Thomas
2012Nucleic Acids Res.1,779 citations Open access
Semantic Scholar
PANTHER: Making genome‐scale phylogenetics accessible to all
P. Thomas, Dustin Ebert, A. Muruganujan, Tremayne Mushayahama +2 more
2021Protein Science1,692 citations Open access
Semantic Scholar
Protocol Update for Large-scale genome and gene function analysis with PANTHER Classification System (v.14.0)
H. Mi, A. Muruganujan, Xiaosong Huang, Dustin Ebert +3 more
2019Nature Protocols1,374 citations Open access
Semantic Scholar
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
H. Mi, Dustin Ebert, A. Muruganujan, Caitlin Mills +3 more
2020Nucleic Acids Res.1,157 citations Open access
Semantic Scholar
The PANTHER database of protein families, subfamilies, functions and pathways
H. Mi, Betty Lazareva-Ulitsky, R. Loo, A. Kejariwal +8 more
2004Nucleic Acids Res.851 citations Open access
Semantic Scholar
PANTHER version 10: expanded protein families and functions, and analysis tools
H. Mi, S. Poudel, A. Muruganujan, J. Casagrande +1 more
2015Nucleic Acids Res.818 citations Open access
Semantic Scholar
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
P. Thomas, A. Kejariwal, M. J. Campbell, H. Mi +8 more
2003Nucleic Acids Res.686 citations Open access
Semantic Scholar
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium
H. Mi, Qing Dong, A. Muruganujan, P. Gaudet +2 more
2009Nucleic Acids Res.610 citations Open access
Semantic Scholar
Applications for protein sequence–function evolution data: mRNA/protein expression analysis and coding SNP scoring tools
P. Thomas, A. Kejariwal, N. Guo, H. Mi +3 more
2006Nucleic Acids Res.526 citations Open access
Semantic Scholar
The Gene Ontology knowledgebase in 2026
Suzi A James P Seth J Michael Dustin Marc Pascale Nomi Aleksander Balhoff Carbon Cherry Ebert Feuermann G, Suzi A. Aleksander, J. Balhoff, S. Carbon +132 more
2025Nucleic Acids Research228 citations Open access
Semantic Scholar
Alliance of Genome Resources Portal: unified model organism research platform
J. Agapite, Laurent-Philippe Albou, Suzi A. Aleksander, Joanna Argasinska +89 more
2019Nucleic Acids Res.158 citations Open access
Semantic Scholar
Harmonizing model organism data in the Alliance of Genome Resources
Julie Laurent-Philippe Suzanne A Micheal Anna V Giulia J Agapite Albou Aleksander Alexander Anagnostopoulos, J. Agapite, Laurent-Philippe Albou, Suzanne A. Aleksander +124 more
2022Genetics83 citations Open access
Semantic Scholar
Updates to the Alliance of Genome Resources central infrastructure
Suzanne A. Aleksander, A. Anagnostopoulos, Giulia Antonazzo, V. Arnaboldi +97 more
2024Genetics71 citations Open access
Semantic Scholar
Erratum: PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification (Nucleic Acids Research (2003) vol. 31 (334-341))
P. Thomas, A. Kejariwal, M. J. Campbell, H. Mi +8 more
200371 citations Open access
Semantic Scholar
A compendium of human gene functions derived from evolutionary modelling
M. Feuermann, H. Mi, Pascale Gaudet, A. Muruganujan +160 more
2025Nature32 citations Open access
Semantic Scholar
PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference
Peifen Zhang, T. Berardini, Dustin Ebert, Qian Li +7 more
2020Plant Direct32 citations Open access
Semantic Scholar
PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence
Caitlin Mills, A. Muruganujan, Dustin Ebert, C. Marconett +3 more
2020PLoS ONE22 citations Open access
Semantic Scholar
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools
James C. Hu, G. Sherlock, D. Siegele, Suzanne A. Aleksander +12 more
2013Nucleic Acids Res.22 citations Open access
Semantic Scholar
Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
Xiaosong Huang, Laurent-Philippe Albou, Tremayne Mushayahama, A. Muruganujan +2 more
2018Nucleic Acids Res.18 citations Open access
Semantic Scholar
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
E. Deutsch, R. Kramer, J. Ames, Andrew T. Bauman +21 more
2018bioRxiv7 citations Open access
Semantic Scholar
BioPAX Support in CellDesigner
A. Muruganujan, H. Mi
2011Nature Precedings5 citations Open access
Semantic Scholar
Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation
Zhu Liu, Tremayne Mushayahama, B. Queme, Dustin Ebert +4 more
2022Nucleic Acids Res.3 citations Open access
Semantic Scholar
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools
James C. Hu, G. Sherlock, D. Siegele, Suzanne A. Aleksander +12 more
2014Nucleic Acids Research3 citations Open access
Semantic Scholar
The sequence of the human genome (abstract only)
J. Venter, M. Adams, E. Myers, P.-W. Li +270 more
2001Annual International Conference on Research in Computational Molecular Biology3 citations
Semantic Scholar
BioPAX support in CellDesigner
H. Mi, A. Muruganujan, E. Demir, Yukiko Matsuoka +3 more
2011Bioinform.2 citations Open access
Semantic Scholar
Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium
Suzanne A. Aleksander, A. Anagnostopoulos, Giulia Antonazzo, V. Arnaboldi +97 more
2023bioRxiv1 citations Open access
Semantic Scholar
An Introduction to the PANTHER Pathway Resource
Huaiyu Myi, A. Muruganujan, S. Dong, P. Thomas
20091 citations
Semantic Scholar
From SNPs to pathways: a genome-wide benchmark of annotation discrepancies and their impact on protein- and pathway-level inference
B. Queme, A. Muruganujan, Dustin Ebert, Tremayne Mushayahama +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
SNPWay: streamlined SNP-to-function and pathway over-representation analysis
B. Queme, Ayaan Kakkar, A. Muruganujan, Paul D. Thomas +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
Peer Review #2 of "Integrated transcriptome meta-analysis of pancreatic ductal adenocarcinoma and matched adjacent pancreatic tissues (v0.1)"
S. Atay, M. Amrutkar, Gladhaug Ip, D. Aran +437 more
20200 citations Open access
Semantic Scholar
Peer Review #1 of "RITAN: rapid integration of term annotation and network resources (v0.1)"
M. Zimmermann, B. Kabat, D. Grill, R. Kennedy +484 more
20190 citations Open access
Semantic Scholar
Peer Review #1 of "Structural, functional and molecular dynamics analysis of cathepsin B gene SNPs associated with tropical calcific pancreatitis, a rare disease of tropics (v0.1)"
Garima Singh, Krishna Jayadev Magani, Rinku Sharma, B. Bhat +227 more
20190 citations Open access
Semantic Scholar

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