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D. Vavylonis · SciRah

Researcher profile · Semantic Scholar

D. Vavylonis

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D. Vavylonis — researcher profile on SciRah

h-index: 29
Works: 156
Citations: 3,808

Most-cited papers

Spontaneous Cdc42 Polarization Independent of GDI-Mediated Extraction and Actin-Based Trafficking
Felipe Bendezú, Vincent Vincenzetti, D. Vavylonis, Romain Wyss +2 more
2015PLoS Biology131 citations Open access
Semantic Scholar
Nanoscale Movements of Cellulose Microfibrils in Primary Cell Walls
Tian Zhang, D. Vavylonis, Daniel M. Durachko, D. Cosgrove
2017Nature Plants128 citations Open access
Semantic Scholar
Reconstitution of contractile actomyosin rings in vesicles
Thomas Litschel, Charlotte F. Kelley, Daniel Holz, Maral Adeli Koudehi +5 more
2020Nature Communications117 citations Open access
Semantic Scholar
Disentangling loosening from softening: insights into primary cell wall structure.
Tian Zhang, Haosu Tang, D. Vavylonis, D. Cosgrove
2019The Plant Journal106 citations Open access
Semantic Scholar
SOAX: A software for quantification of 3D biopolymer networks
Ting Xu, D. Vavylonis, Feng-Ching Tsai, G. Koenderink +5 more
2015Scientific Reports99 citations Open access
Semantic Scholar
Two Functionally Distinct Sources of Actin Monomers Supply the Leading Edge of Lamellipodia
Eric A. Vitriol, Laura M. McMillen, M. Kapustina, Shawn M. Gomez +2 more
2015Cell Reports78 citations Open access
Semantic Scholar
Compressive forces stabilize microtubules in living cells
Yuhui Li, O. Kučera, D. Cuvelier, David M. Rutkowski +10 more
2023Nature Materials74 citations Open access
Semantic Scholar
ACD toxin-produced actin oligomers poison formin-controlled actin polymerization
David B. Heisler, E. Kudryashova, Dmitry Grinevich, C. Suarez +7 more
2015Science57 citations Open access
Semantic Scholar
Local pheromone release from dynamic polarity sites underlies cell-cell pairing during yeast mating
L. Merlini, Bita Khalili, Felipe Bendezú, D. Hurwitz +3 more
2016Current Biology52 citations Open access
Semantic Scholar
New single-molecule speckle microscopy reveals modification of the retrograde actin flow by focal adhesions at nanometer scales
Sawako Yamashiro, H. Mizuno, Matthew B. Smith, G. L. Ryan +3 more
2014Molecular Biology of the Cell46 citations Open access
Semantic Scholar
Model of Fission Yeast Cell Shape Driven by Membrane-Bound Growth Factors and the Cytoskeleton
Tyler C. Drake, D. Vavylonis
2013PLoS Comput. Biol.43 citations Open access
Semantic Scholar
3D Actin Network Centerline Extraction with Multiple Active Contours
Ting Xu, D. Vavylonis, Xiaolei Huang
2013Medical Image Anal.42 citations Open access
Semantic Scholar
Dynamic network morphology and tension buildup in a 3D model of cytokinetic ring assembly.
T. Bidone, Haosu Tang, D. Vavylonis
2014Biophysical Journal40 citations Open access
Semantic Scholar
Distributed actin turnover in the lamellipodium and FRAP kinetics.
Matthew B. Smith, T. Kiuchi, Naoki Watanabe, D. Vavylonis
2013Biophysical Journal40 citations Open access
Semantic Scholar
Cell patterning by secretion-induced plasma membrane flows
Veneta Gerganova, Iker Lamas, David M. Rutkowski, Aleksandar Vještica +4 more
2020bioRxiv29 citations Open access
Semantic Scholar
Myosin-dependent actin stabilization as revealed by single-molecule imaging of actin turnover
Sawako Yamashiro, Soichiro Tanaka, Laura M. McMillen, Daisuke Taniguchi +2 more
2018Molecular Biology of the Cell26 citations Open access
Semantic Scholar
Actin cable distribution and dynamics arising from cross-linking, motor pulling, and filament turnover
Haosu Tang, D. Laporte, D. Vavylonis
2014Molecular Biology of the Cell25 citations Open access
Semantic Scholar
Actin cross-linking toxin is a universal inhibitor of tandem-organized and oligomeric G-actin binding proteins
E. Kudryashova, David B. Heisler, B. Williams, Alyssa J. Harker +5 more
2018Current Biology24 citations Open access
Semantic Scholar
Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes
David M. Rutkowski, D. Vavylonis
2021bioRxiv23 citations Open access
Semantic Scholar
Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer
Brandon G Horan, Gül H. Zerze, Y. C. Kim, D. Vavylonis +1 more
2018FEBS Letters23 citations Open access
Semantic Scholar
ER-PM contacts define actomyosin kinetics for proper contractile ring assembly
Dan Zhang, T. Bidone, D. Vavylonis
2016Current Biology23 citations Open access
Semantic Scholar
Cell Protrusion and Retraction Driven by Fluctuations in Actin Polymerization: A Two-Dimensional Model
G. L. Ryan, Daniel Holz, Sawako Yamashiro, Daisuke Taniguchi +2 more
2017Cytoskeleton22 citations Open access
Semantic Scholar
Building a dendritic actin filament network branch by branch: models of filament orientation pattern and force generation in lamellipodia
Daniel Holz, D. Vavylonis
2018Biophysical Reviews21 citations Open access
Semantic Scholar
Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks
Bita Khalili, L. Merlini, Vincent Vincenzetti, Sophie G. Martin +1 more
2018PLoS Comput. Biol.21 citations Open access
Semantic Scholar
Convection-Induced Biased Distribution of Actin Probes in Live Cells.
Sawako Yamashiro, Daisuke Taniguchi, Soichiro Tanaka, T. Kiuchi +2 more
2019Biophysical Journal18 citations Open access
Semantic Scholar
Automated Tracking of Biopolymer Growth and Network Deformation with TSOAX
Ting Xu, Christos Langouras, Maral Adeli Koudehi, B. Vos +4 more
2018Scientific Reports17 citations Open access
Semantic Scholar
Organization of Associating or Crosslinked Actin Filaments in Confinement
Maral Adeli Koudehi, David M. Rutkowski, D. Vavylonis
2019bioRxiv15 citations Open access
Semantic Scholar
Myosin-I synergizes with Arp2/3 complex to enhance the pushing forces of branched actin networks
Meng-Qi Xu, David M. Rutkowski, G. Rebowski, M. Boczkowska +4 more
2024Science Advances14 citations Open access
Semantic Scholar
Image analysis tools to quantify cell shape and protein dynamics near the leading edge.
G. L. Ryan, Naoki Watanabe, D. Vavylonis
2013Cell Structure and Function14 citations Open access
Semantic Scholar
Force transmission by retrograde actin flow-induced dynamic molecular stretching of Talin
Sawako Yamashiro, David M. Rutkowski, K. Lynch, Ying Liu +2 more
2023Nature Communications12 citations Open access
Semantic Scholar
Fission Yeast Polarization: Modeling Cdc42 Oscillations, Symmetry Breaking, and Zones of Activation and Inhibition
Bita Khalili, Hailey Lovelace, David M. Rutkowski, Daniel Holz +1 more
2020Cells12 citations Open access
Semantic Scholar
Lamellipodium tip actin barbed ends serve as a force sensor
Kazuma Koseki, Daisuke Taniguchi, Sawako Yamashiro, H. Mizuno +2 more
2019Genes to Cells11 citations Open access
Semantic Scholar
Multiple polarity kinases inhibit phase separation of F-BAR protein Cdc15 and antagonize cytokinetic ring assembly in fission yeast
R. Bhattacharjee, Aaron R. Hall, M. Mangione, Maya G Igarashi +4 more
2022bioRxiv10 citations Open access
Semantic Scholar
Insights into actin polymerization and nucleation using a coarse grained model
Brandon G Horan, Aaron R. Hall, D. Vavylonis
2019bioRxiv10 citations Open access
Semantic Scholar
Computational model of polarized actin cables and cytokinetic actin ring formation in budding yeast
Haosu Tang, T. Bidone, D. Vavylonis
2015Cytoskeleton10 citations Open access
Semantic Scholar
Formation of contractile networks and fibers in the medial cell cortex through myosin-II turnover, contraction, and stress-stabilization
Wei Nie, M. Wei, D. Ou-yang, S. Jedlicka +1 more
2015Cytoskeleton9 citations Open access
Semantic Scholar
Force transmission by retrograde actin flow-induced dynamic molecular stretching of Talin
Sawako Yamashiro, David M. Rutkowski, Kelli Ann Lynch, Ying Liu +2 more
2023Research Square8 citations Open access
Semantic Scholar
Cdc42 GTPase-activating proteins (GAPs) regulate generational inheritance of cell polarity and cell shape in fission yeast
Marbelys Rodriguez Pino, Illyce Nuñez, Chuan Chen, Maitreyi E. Das +5 more
2021Molecular Biology of the Cell8 citations Open access
Semantic Scholar
Model of Turnover Kinetics in the Lamellipodium: Implications of Slow- and Fast-Diffusing Capping Protein and Arp2/3 Complex
Laura M. McMillen, D. Vavylonis
2016Physical Biology8 citations Open access
Semantic Scholar
Myosin-I Synergizes with Arp2/3 Complex to Enhance Pushing Forces of Branched Actin Networks
Meng-Qi Xu, David M. Rutkowski, G. Rebowski, M. Boczkowska +4 more
2024bioRxiv7 citations Open access
Semantic Scholar
How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems?
J. Doudna, R. Bar-Ziv, J. Elf, V. Noireaux +5 more
2017Cell Systems7 citations Open access
Semantic Scholar
Cdc42 mobility and membrane flows regulate fission yeast cell shape and survival
David M. Rutkowski, Vincent Vincenzetti, D. Vavylonis, Sophie G. Martin
2023bioRxiv6 citations Open access
Semantic Scholar
Steps of actin filament branch formation by Arp2/3 complex investigated with coarse-grained molecular dynamics
Shuting Zhang, D. Vavylonis
2023Frontiers in Cell and Developmental Biology5 citations Open access
Semantic Scholar
Rounding Out the Understanding of ACD Toxicity with the Discovery of Cyclic Forms of Actin Oligomers
Harper Smith, N. Pinkerton, David B. Heisler, E. Kudryashova +8 more
2021International Journal of Molecular Sciences5 citations Open access
Semantic Scholar
A mechanism with severing near barbed ends and annealing explains structure and dynamics of dendritic actin networks
Daniel Holz, Aaron R. Hall, Eiji Usukura, Sawako Yamashiro +2 more
2021bioRxiv5 citations Open access
Semantic Scholar
Molecular viewing of actin polymerizing actions and beyond: Combination analysis of single‐molecule speckle microscopy with modeling, FRAP and s‐FDAP (sequential fluorescence decay after photoactivation)
Naoki Watanabe, Sawako Yamashiro, D. Vavylonis, T. Kiuchi
2013Development, Growth and Differentiation5 citations Open access
Semantic Scholar
Ca2+-dependent vesicular and non-vesicular lipid transfer controls hypoosmotic plasma membrane expansion
Baicong Mu, David M. Rutkowski, G. Grenci, D. Vavylonis +1 more
2025BMC Biology4 citations Open access
Semantic Scholar
Cell Biology: Capturing Formin’s Mechano-Inhibition
D. Vavylonis, Brandon G Horan
2017Current Biology4 citations Open access
Semantic Scholar
3D printing cytoskeletal networks: ROS-induced filament severing leads to surge in actin polymerization
Thomas Litschel, D. Vavylonis, David A. Weitz
2025bioRxiv3 citations Open access
Semantic Scholar
Cdc42 mobility and membrane flows regulate fission yeast cell shape and survival
David M. Rutkowski, Vincent Vincenzetti, D. Vavylonis, Sophie G. Martin
2024Nature Communications3 citations Open access
Semantic Scholar

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