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S. Shorte · SciRah

Researcher profile · Semantic Scholar

S. Shorte

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S. Shorte — researcher profile on SciRah

h-index: 36
Works: 119
Citations: 9,606

Most-cited papers

TrackMate: An open and extensible platform for single-particle tracking.
J. Tinevez, N. Perry, J. Schindelin, G. Hoopes +5 more
2017Methods3,167 citations Open access
Semantic Scholar
Objective comparison of particle tracking methods
Nicolas Chenouard, Ihor Smal, F. de Chaumont, Martin Maška +31 more
2014Nature Methods911 citations Open access
Semantic Scholar
Quantitative imaging of Plasmodium transmission from mosquito to mammal
R. Amino, S. Thiberge, Béatrice Martin, Susanna Celli +3 more
2006Nature Medicine619 citations
Semantic Scholar
Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites.
L. Freitas-Junior, R. Hernández‐Rivas, Stuart A. Ralph, D. Montiel-Condado +7 more
2005Cell506 citations Open access
Semantic Scholar
Screening out irrelevant cell-based models of disease
P. Horváth, Nathalie Aulner, M. Bickle, A. Davies +10 more
2016Nature reviews. Drug discovery497 citations Open access
Semantic Scholar
Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes
N. Arhel, Auguste Genovesio, Kyeong-Ae Kim, S. Miko +4 more
2006Nature Methods297 citations
Semantic Scholar
Human Nucleoporins Promote HIV-1 Docking at the Nuclear Pore, Nuclear Import and Integration
F. Di Nunzio, A. Danckaert, T. Fricke, Patricio Perez +7 more
2012PLoS ONE193 citations Open access
Semantic Scholar
MuscleJ: a high-content analysis method to study skeletal muscle with a new Fiji tool
A. Mayeuf-Louchart, D. Hardy, Q. Thorel, P. Roux +9 more
2018Skeletal Muscle140 citations Open access
Semantic Scholar
Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb
Carsten Wolff, J. Tinevez, T. Pietzsch, Evangelia Stamataki +7 more
2018eLife140 citations Open access
Semantic Scholar
Parallel derivation of isogenic human primed and naive induced pluripotent stem cells
Stéphanie Kilens, D. Meistermann, Diego Moreno, Caroline Chariau +62 more
2018Nature Communications121 citations Open access
Semantic Scholar
Shigella subverts the host recycling compartment to rupture its vacuole.
Nora Mellouk, A. Weiner, Nathalie Aulner, C. Schmitt +4 more
2014Cell Host and Microbe100 citations Open access
Semantic Scholar
Imaging Cellular and Molecular Biological Functions
S. Shorte, F. Frischknecht
200792 citations
Semantic Scholar
A quantitative method for measuring phototoxicity of a live cell imaging microscope.
J. Tinevez, J. Dragavon, Lamya Baba-Aissa, P. Roux +4 more
2012Methods in Enzymology91 citations
Semantic Scholar
In vivo imaging of malaria parasites in the murine liver
S. Thiberge, Samantha Blazquez, P. Baldacci, O. Renaud +3 more
2007Nature Protocols91 citations
Semantic Scholar
Deep learning in image-based phenotypic drug discovery.
Daniel Krentzel, S. Shorte, C. Zimmer
2023Trends in Cell Biology83 citations Open access
Semantic Scholar
Imaging malaria sporozoites in the dermis of the mammalian host
R. Amino, S. Thiberge, Samantha Blazquez, P. Baldacci +3 more
2007Nature Protocols83 citations Open access
Semantic Scholar
The SPI-2 type III secretion system restricts motility of Salmonella-containing vacuoles
Amy E. Ramsden, L. J. Mota, Sylvia Münter, S. Shorte +1 more
2007Cellular Microbiology82 citations Open access
Semantic Scholar
Visualization of local Ca2+ dynamics with genetically encoded bioluminescent reporters
K. Rogers, J. Stinnakre, C. Agulhon, D. Jublot +3 more
2005European Journal of Neuroscience82 citations
Semantic Scholar
Next-Generation Phenotypic Screening in Early Drug Discovery for Infectious Diseases.
Nathalie Aulner, A. Danckaert, J. Ihm, David Shum +1 more
2019Trends in Parasitology75 citations Open access
Semantic Scholar
Microtubule-associated Proteins 1 (MAP1) Promote Human Immunodeficiency Virus Type I (HIV-1) Intracytoplasmic Routing to the Nucleus
Juliette Fernandez, D. Portilho, A. Danckaert, S. Munier +9 more
2014Journal of Biological Chemistry71 citations Open access
Semantic Scholar
High Content Analysis of Primary Macrophages Hosting Proliferating Leishmania Amastigotes: Application to Anti-leishmanial Drug Discovery
Nathalie Aulner, A. Danckaert, Eline Rouault-Hardoin, J. Desrivot +7 more
2013PLoS Neglected Tropical Diseases68 citations Open access
Semantic Scholar
Bioimage analysis of Shigella infection reveals targeting of colonic crypts
Ellen T. Arena, F. Campbell-Valois, J. Tinevez, G. Nigro +6 more
2015Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
Additional file 8: of Phenotypic clustering: a novel method for microglial morphology analysis
Franck Verdonk, P. Roux, P. Flamant, L. Fiette +8 more
201662 citations
Semantic Scholar
Bacterial and Host Factors Implicated in Nasal Carriage of Methicillin-Resistant Staphylococcus aureus in Mice
B. González-Zorn, J. Senna, L. Fiette, S. Shorte +4 more
2005Infection and Immunity62 citations Open access
Semantic Scholar
Over-expression of Leishmania major MAP kinases reveals stage-specific induction of phosphotransferase activity.
M. A. Morales, O. Renaud, W. Faigle, S. Shorte +1 more
2007International Journal of Parasitology58 citations
Semantic Scholar
Phenotypic clustering: a novel method for microglial morphology analysis
Franck Verdonk, P. Roux, P. Flamant, L. Fiette +8 more
2016Journal of Neuroinflammation55 citations Open access
Semantic Scholar
The giant spectrin βV couples the molecular motors to phototransduction and Usher syndrome type I proteins along their trafficking route.
S. Papal, Matteo Cortese, Kirian Legendre, N. Sorusch +6 more
2013Human Molecular Genetics54 citations
Semantic Scholar
Quantitative imaging of Plasmodium sporozoites in the mammalian host.
R. Amino, S. Thiberge, S. Shorte, F. Frischknecht +1 more
2006Comptes rendus. Biologies48 citations Open access
Semantic Scholar
Three-dimensional FRET reconstruction microscopy for analysis of dynamic molecular interactions in live cells.
A. Hoppe, S. Shorte, J. Swanson, R. Heintzmann
2008Biophysical Journal40 citations Open access
Semantic Scholar
Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization
J. Tinevez, Ellen T. Arena, Mark C Anderson, G. Nigro +8 more
2019Nature Microbiology38 citations Open access
Semantic Scholar
Marine dissolved organic matter: a vast and unexplored molecular space
T. S. Catalá, S. Shorte, T. Dittmar
2021Applied Microbiology and Biotechnology37 citations Open access
Semantic Scholar
LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images
Sébastien Herbert, Léo Valon, Laure Mancini, Nicolas Dray +8 more
2021BMC Biology37 citations Open access
Semantic Scholar
Actin polymerisation at the cytoplasmic face of eukaryotic nuclei
Sylvia Münter, J. Enninga, R. Vázquez-Martínez, E. Delbarre +3 more
2006BMC Cell Biology35 citations Open access
Semantic Scholar
Imaging today's infectious animalcules.
Freddy Frischknecht, O. Renaud, S. Shorte
2006Current Opinion in Microbiology35 citations
Semantic Scholar
Conical diffraction illumination opens the way for low phototoxicity super-resolution imaging
Julien Caron, C. Fallet, J. Tinevez, Lionel Moisan +3 more
2014Cell Adhesion & Migration34 citations Open access
Semantic Scholar
Adhesion to nanofibers drives cell membrane remodeling through one-dimensional wetting
Arthur Charles-Orszag, Feng-Ching Tsai, Daria Bonazzi, Valeria Manríquez +15 more
2018Nature Communications30 citations Open access
Semantic Scholar
Technoreview: Focusing light on infection in four dimensions
P. Roux, Sylvia Münter, Freddy Frischknecht, P. Herbomel +1 more
2004Cellular Microbiology30 citations Open access
Semantic Scholar
Distinct single-component adjuvants steer human DC-mediated T-cell polarization via Toll-like receptor signaling toward a potent antiviral immune response
Laura Roßmann, Katrin Bagola, T. Stephen, A. Gerards +10 more
2021Proceedings of the National Academy of Sciences of the United States of America29 citations Open access
Semantic Scholar
Electron-multiplying charge-coupled detector-based bioluminescence recording of single-cell Ca2+.
K. Rogers, Jean-René Martin, O. Renaud, E. Karplus +5 more
2008Journal of Biomedical Optics25 citations Open access
Semantic Scholar
MuscleJ2: a rebuilding of MuscleJ with new features for high-content analysis of skeletal muscle immunofluorescence slides
A. Danckaert, Aurélie Trignol, Guillaume Le Loher, Sébastien Loubens +4 more
2023Skeletal Muscle23 citations Open access
Semantic Scholar
In vivo excitation of nanoparticles using luminescent bacteria
J. Dragavon, Samantha Blazquez, A. Rekiki, C. Samson +4 more
2012Proceedings of the National Academy of Sciences of the United States of America21 citations Open access
Semantic Scholar
High‐resolution 3‐D imaging of living cells in suspension using confocal axial tomography
O. Renaud, J. Viña, Yong Yu, Christophe Machu +4 more
2008Biotechnology Journal21 citations
Semantic Scholar
Isotropic high‐resolution three‐dimensional confocal micro‐rotation imaging for non‐adherent living cells
B. L. Saux, B. Chalmond, Y. Yu, A. Trouvé +2 more
2009Journal of Microscopy20 citations
Semantic Scholar
Real-time label-free detection of dividing cells by means of lensfree video-microscopy
S. V. Kesavan, F. Navarro, M. Menneteau, F. Mittler +6 more
2014Journal of Biomedical Optics18 citations Open access
Semantic Scholar
Unveiling Interindividual Variability of Human Fibroblast Innate Immune Response Using Robust Cell-Based Protocols
Audrey Chansard, N. Dubrulle, Mathilde Poujol de Molliens, P. Falanga +6 more
2020bioRxiv14 citations Open access
Semantic Scholar
Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines
P. Scepanovic, C. Alanio, C. Hammer, F. Hodel +49 more
2018Genome Medicine14 citations Open access
Semantic Scholar
Video lensfree microscopy of 2D and 3D culture of cells
C. Allier, S. V. Kesavan, J. Coutard, O. Cioni +17 more
2014Biomedical optics11 citations
Semantic Scholar
A Bayesian reconstruction method for micro‐rotation imaging in light microscopy
Danai Laksameethanasan, Sami Sebastian Brandt, P. Engelhardt, O. Renaud +1 more
2008Microscopy research and technique (Print)11 citations
Semantic Scholar
Quantitative real‐time analysis of HIV‐1 gene expression dynamics in single living primary cells
A. Sáez-Cirión, M. Nicola, G. Pancino, S. Shorte
2006Biotechnology Journal11 citations
Semantic Scholar
A Dual Microscopy-Based Assay To Assess Listeria monocytogenes Cellular Entry and Vacuolar Escape
J. Quereda, J. Pizarro-Cerdá, Damien Balestrino, Alexandre Bobard +5 more
2015Applied and Environmental Microbiology10 citations Open access
Semantic Scholar

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